RNA–Protein interactions for RNA: ENST00000637285.1

SCN1A-215, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

TSL 5

Gene SCN1A, Length 100 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-215ENST00000637285 PCDHGA10Q9Y5H3 936 aa5.43□□□□□ -1.54
SCN1A-215ENST00000637285 RYDENQ9NUL5 291 aaKnown RBP5.42□□□□□ -1.54
SCN1A-215ENST00000637285 SEPT9Q9UHD8 586 aaPredicted RBP5.42□□□□□ -1.54
SCN1A-215ENST00000637285 GFRA3O60609 400 aa5.41□□□□□ -1.54
SCN1A-215ENST00000637285 TRAF7Q6Q0C0 670 aa5.41□□□□□ -1.54
SCN1A-215ENST00000637285 NYAP1Q6ZVC0 841 aa5.41□□□□□ -1.54
SCN1A-215ENST00000637285 LAPTM4BQ86VI4 370 aa5.41□□□□□ -1.54
SCN1A-215ENST00000637285 DDX27Q96GQ7 796 aaKnown RBP5.41□□□□□ -1.54
SCN1A-215ENST00000637285 LAPTM4AQ15012 233 aa5.4□□□□□ -1.54
SCN1A-215ENST00000637285 TYW1BQ6NUM6 668 aa5.4□□□□□ -1.54
SCN1A-215ENST00000637285 LCE2BO14633 110 aa5.39□□□□□ -1.55
SCN1A-215ENST00000637285 FBXW7Q969H0 707 aa5.39□□□□□ -1.55
SCN1A-215ENST00000637285 HPS5Q9UPZ3 1129 aa5.39□□□□□ -1.55
SCN1A-215ENST00000637285 LRCH3Q96II8 777 aa5.38□□□□□ -1.55
SCN1A-215ENST00000637285 EMILIN3Q9NT22 766 aa5.38□□□□□ -1.55
SCN1A-215ENST00000637285 CDKN2AIPQ9NXV6 580 aaPredicted RBP5.38□□□□□ -1.55
SCN1A-215ENST00000637285 PHF14O94880 888 aa5.37□□□□□ -1.55
SCN1A-215ENST00000637285 C6orf132Q5T0Z8 1188 aa5.37□□□□□ -1.55
SCN1A-215ENST00000637285 TSR3Q9UJK0 312 aaKnown RBP5.37□□□□□ -1.55
SCN1A-215ENST00000637285 FAM98CQ17RN3 349 aaKnown RBP5.36□□□□□ -1.55
SCN1A-215ENST00000637285 RBM33Q96EV2 1170 aaKnown RBP5.36□□□□□ -1.55
SCN1A-215ENST00000637285 PRKD2Q9BZL6 878 aa5.36□□□□□ -1.55
SCN1A-215ENST00000637285 DNAJC5Q9H3Z4 198 aa5.36□□□□□ -1.55
SCN1A-215ENST00000637285 TRIM6-TRIM34B2RNG4 842 aa5.35□□□□□ -1.55
SCN1A-215ENST00000637285 ONECUT3O60422 494 aaPredicted RBP5.35□□□□□ -1.55
SCN1A-215ENST00000637285 PPP4CP60510 307 aa5.34□□□□□ -1.55
SCN1A-215ENST00000637285 MFSD10Q14728 455 aa5.34□□□□□ -1.55
SCN1A-215ENST00000637285 NRG2O14511 850 aaPredicted RBP5.33□□□□□ -1.56
SCN1A-215ENST00000637285 GTPBP6O43824 516 aaPredicted RBP5.33□□□□□ -1.56
SCN1A-215ENST00000637285 EPAS1Q99814 870 aa5.33□□□□□ -1.56
SCN1A-215ENST00000637285 ZNF787Q6DD87 383 aa5.32□□□□□ -1.56
SCN1A-215ENST00000637285 TJAP1Q5JTD0 557 aa5.31□□□□□ -1.56
SCN1A-215ENST00000637285 PPP1R18Q6NYC8 613 aa5.31□□□□□ -1.56
SCN1A-215ENST00000637285 PACS2Q86VP3 889 aa5.31□□□□□ -1.56
SCN1A-215ENST00000637285 DDX12PQ92771 950 aa5.31□□□□□ -1.56
SCN1A-215ENST00000637285 DPYSL4O14531 572 aa5.3□□□□□ -1.56
SCN1A-215ENST00000637285 SMAPO00193 183 aa5.29□□□□□ -1.56
SCN1A-215ENST00000637285 SAMD7Q7Z3H4 446 aa5.29□□□□□ -1.56
SCN1A-215ENST00000637285 CADPS2Q86UW7 1296 aa5.29□□□□□ -1.56
SCN1A-215ENST00000637285 MTRQ99707 1265 aa5.29□□□□□ -1.56
SCN1A-215ENST00000637285 TSKSQ9UJT2 592 aa5.29□□□□□ -1.56
SCN1A-215ENST00000637285 PDZRN3Q9UPQ7 1066 aa5.29□□□□□ -1.56
SCN1A-215ENST00000637285 V9GY48 417 aaPredicted RBP5.29□□□□□ -1.56
SCN1A-215ENST00000637285 MAP3K7O43318 606 aa5.28□□□□□ -1.56
SCN1A-215ENST00000637285 ZNF516Q92618 1163 aa5.28□□□□□ -1.56
SCN1A-215ENST00000637285 IL21Q9HBE4 155 aa5.28□□□□□ -1.56
SCN1A-215ENST00000637285 EIF4ENIF1Q9NRA8 985 aaKnown RBP5.28□□□□□ -1.56
SCN1A-215ENST00000637285 RNF40O75150 1001 aa5.27□□□□□ -1.57
SCN1A-215ENST00000637285 NBR1Q14596 966 aa5.27□□□□□ -1.57
SCN1A-215ENST00000637285 TSR1Q2NL82 804 aaKnown RBP5.27□□□□□ -1.57
SCN1A-215ENST00000637285 ZNF775Q96BV0 537 aaPredicted RBP5.27□□□□□ -1.57
SCN1A-215ENST00000637285 EN1Q05925 392 aaPredicted RBP5.25□□□□□ -1.57
SCN1A-215ENST00000637285 NKX2-3Q8TAU0 364 aa5.25□□□□□ -1.57
SCN1A-215ENST00000637285 CDCA7LQ96GN5 454 aa5.25□□□□□ -1.57
SCN1A-215ENST00000637285 CAMK2BQ13554 666 aa5.24□□□□□ -1.57
SCN1A-215ENST00000637285 DCAF8L2P0C7V8 631 aa5.23□□□□□ -1.57
SCN1A-215ENST00000637285 APLP1P51693 650 aa5.23□□□□□ -1.57
SCN1A-215ENST00000637285 PRSS12P56730 875 aa5.23□□□□□ -1.57
SCN1A-215ENST00000637285 FAM198AQ9UFP1 575 aa5.23□□□□□ -1.57
SCN1A-215ENST00000637285 PNMA3Q9UL41 463 aa5.23□□□□□ -1.57
SCN1A-215ENST00000637285 C3orf80F5H4A9 247 aa5.22□□□□□ -1.57
SCN1A-215ENST00000637285 GGCXP38435 758 aa5.22□□□□□ -1.57
SCN1A-215ENST00000637285 HDGFP51858 240 aaKnown RBP5.22□□□□□ -1.57
SCN1A-215ENST00000637285 COPS2P61201 443 aa5.22□□□□□ -1.57
SCN1A-215ENST00000637285 TATDN2Q93075 761 aa5.22□□□□□ -1.57
SCN1A-215ENST00000637285 NBPF26B4DH59 902 aa5.21□□□□□ -1.58
SCN1A-215ENST00000637285 PKDCCQ504Y2 493 aa5.19□□□□□ -1.58
SCN1A-215ENST00000637285 NUDT18Q6ZVK8 323 aa5.19□□□□□ -1.58
SCN1A-215ENST00000637285 GRXCR2A6NFK2 248 aa5.18□□□□□ -1.58
SCN1A-215ENST00000637285 POTECB2RU33 542 aa5.18□□□□□ -1.58
SCN1A-215ENST00000637285 SLC19A1P41440 591 aa5.18□□□□□ -1.58
SCN1A-215ENST00000637285 PRIM1P49642 420 aaKnown RBP5.18□□□□□ -1.58
SCN1A-215ENST00000637285 PDIA6Q15084 440 aa5.18□□□□□ -1.58
SCN1A-215ENST00000637285 CERKQ8TCT0 537 aa5.18□□□□□ -1.58
SCN1A-215ENST00000637285 MYT1Q01538 1121 aa5.17□□□□□ -1.58
SCN1A-215ENST00000637285 TRIM67Q6ZTA4 783 aa5.17□□□□□ -1.58
SCN1A-215ENST00000637285 TMUB1Q9BVT8 246 aa5.17□□□□□ -1.58
SCN1A-215ENST00000637285 SPDYE16A6NNV3 312 aaPredicted RBP5.16□□□□□ -1.58
SCN1A-215ENST00000637285 ZPR1O75312 459 aa5.16□□□□□ -1.58
SCN1A-215ENST00000637285 SWT1Q5T5J6 900 aaKnown RBP5.16□□□□□ -1.58
SCN1A-215ENST00000637285 SLF2Q8IX21 1173 aa5.16□□□□□ -1.58
SCN1A-215ENST00000637285 CDHR5Q9HBB8 845 aa5.16□□□□□ -1.58
SCN1A-215ENST00000637285 RNF223E7ERA6 249 aa5.15□□□□□ -1.59
SCN1A-215ENST00000637285 DGAT1O75907 488 aa5.15□□□□□ -1.59
SCN1A-215ENST00000637285 NECTIN2Q92692 538 aa5.15□□□□□ -1.59
SCN1A-215ENST00000637285 FAM187AA6NFU0 413 aa5.14□□□□□ -1.59
SCN1A-215ENST00000637285 SLC4A3P48751 1232 aa5.14□□□□□ -1.59
SCN1A-215ENST00000637285 TNFRSF10AO00220 468 aa5.13□□□□□ -1.59
SCN1A-215ENST00000637285 SPRYD7Q5W111 196 aa5.13□□□□□ -1.59
SCN1A-215ENST00000637285 EMID1Q96A84 441 aaPredicted RBP5.13□□□□□ -1.59
SCN1A-215ENST00000637285 PCDHB3Q9Y5E6 796 aa5.13□□□□□ -1.59
SCN1A-215ENST00000637285 PPEF1O14829 653 aaPredicted RBP5.12□□□□□ -1.59
SCN1A-215ENST00000637285 BLOC1S3Q6QNY0 202 aa5.12□□□□□ -1.59
SCN1A-215ENST00000637285 PADI6Q6TGC4 694 aa5.12□□□□□ -1.59
SCN1A-215ENST00000637285 ZNF598Q86UK7 904 aaKnown RBP5.12□□□□□ -1.59
SCN1A-215ENST00000637285 ST8SIA5O15466 376 aa5.11□□□□□ -1.59
SCN1A-215ENST00000637285 TLL1O43897 1013 aa5.11□□□□□ -1.59
SCN1A-215ENST00000637285 OSBPP22059 807 aa5.11□□□□□ -1.59
SCN1A-215ENST00000637285 ZNF697Q5TEC3 545 aa5.11□□□□□ -1.59
SCN1A-215ENST00000637285 TREML4Q6UXN2 200 aa5.11□□□□□ -1.59
Retrieved 100 of 20,778 RNA–protein pairs in 19.7 ms