RNA–Protein interactions for RNA: ENST00000637038.1

SCN1A-214, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

TSL 5

Gene SCN1A, Length 4,268 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-214ENST00000637038 C9orf84Q5VXU9 1444 aa5.56□□□□□ -1.52
SCN1A-214ENST00000637038 HMGB2P26583 209 aaKnown RBP5.55□□□□□ -1.52
SCN1A-214ENST00000637038 NGLY1Q96IV0 654 aa5.55□□□□□ -1.52
SCN1A-214ENST00000637038 ADGRL2O95490 1459 aa5.55□□□□□ -1.52
SCN1A-214ENST00000637038 TRAPPC8Q9Y2L5 1435 aa5.55□□□□□ -1.52
SCN1A-214ENST00000637038 PLEKHD1A6NEE1 506 aa5.55□□□□□ -1.52
SCN1A-214ENST00000637038 CCER2I3L3R5 266 aa5.55□□□□□ -1.52
SCN1A-214ENST00000637038 ARHGEF40Q8TER5 1519 aa5.54□□□□□ -1.52
SCN1A-214ENST00000637038 MTUS2Q5JR59 1369 aa5.54□□□□□ -1.52
SCN1A-214ENST00000637038 MED1Q15648 1581 aaPredicted RBP5.54□□□□□ -1.52
SCN1A-214ENST00000637038 MEX3CQ5U5Q3 659 aaKnown RBP5.54□□□□□ -1.52
SCN1A-214ENST00000637038 ZFYVE16Q7Z3T8 1539 aa5.54□□□□□ -1.52
SCN1A-214ENST00000637038 HDGFP51858 240 aaKnown RBP5.54□□□□□ -1.52
SCN1A-214ENST00000637038 FAM135AQ9P2D6 1515 aa5.53□□□□□ -1.52
SCN1A-214ENST00000637038 MIA2Q96PC5 1412 aa5.53□□□□□ -1.52
SCN1A-214ENST00000637038 EFCAB2Q5VUJ9 269 aa5.53□□□□□ -1.52
SCN1A-214ENST00000637038 RPRD2Q5VT52 1461 aaKnown RBP5.52□□□□□ -1.53
SCN1A-214ENST00000637038 DDX10Q13206 875 aaKnown RBP5.52□□□□□ -1.53
SCN1A-214ENST00000637038 SIN3AQ96ST3 1273 aa5.52□□□□□ -1.53
SCN1A-214ENST00000637038 LAMC1P11047 1609 aa5.52□□□□□ -1.53
SCN1A-214ENST00000637038 TRPM1Q7Z4N2 1603 aa5.52□□□□□ -1.53
SCN1A-214ENST00000637038 RNF17Q9BXT8 1623 aaKnown RBP5.52□□□□□ -1.53
SCN1A-214ENST00000637038 ATP10AO60312 1499 aa5.52□□□□□ -1.53
SCN1A-214ENST00000637038 TTC37Q6PGP7 1564 aa5.52□□□□□ -1.53
SCN1A-214ENST00000637038 NCOA1Q15788 1441 aa5.52□□□□□ -1.53
SCN1A-214ENST00000637038 P3H3Q8IVL6 736 aa5.51□□□□□ -1.53
SCN1A-214ENST00000637038 ABCC5O15440 1437 aa5.51□□□□□ -1.53
SCN1A-214ENST00000637038 UNC13BO14795 1591 aa5.51□□□□□ -1.53
SCN1A-214ENST00000637038 CDK12Q9NYV4 1490 aaPredicted RBP5.51□□□□□ -1.53
SCN1A-214ENST00000637038 PREX2Q70Z35 1606 aa5.51□□□□□ -1.53
SCN1A-214ENST00000637038 ROCK1Q13464 1354 aa5.51□□□□□ -1.53
SCN1A-214ENST00000637038 DAPK1P53355 1430 aa5.51□□□□□ -1.53
SCN1A-214ENST00000637038 RIMS1Q86UR5 1692 aaKnown RBP5.5□□□□□ -1.53
SCN1A-214ENST00000637038 PPP4R3CPQ6ZMV5 832 aa5.5□□□□□ -1.53
SCN1A-214ENST00000637038 THEMISQ8N1K5 641 aaPredicted RBP5.5□□□□□ -1.53
SCN1A-214ENST00000637038 MAST1Q9Y2H9 1570 aa5.5□□□□□ -1.53
SCN1A-214ENST00000637038 AGLP35573 1532 aa5.5□□□□□ -1.53
SCN1A-214ENST00000637038 ANKRD30BQ9BXX2 1392 aa5.5□□□□□ -1.53
SCN1A-214ENST00000637038 FKBP8Q14318 412 aa5.5□□□□□ -1.53
SCN1A-214ENST00000637038 TSHZ2Q9NRE2 1034 aa5.5□□□□□ -1.53
SCN1A-214ENST00000637038 ATAD2Q6PL18 1390 aa5.5□□□□□ -1.53
SCN1A-214ENST00000637038 ARHGEF5Q12774 1597 aa5.5□□□□□ -1.53
SCN1A-214ENST00000637038 ANKLE2Q86XL3 938 aa5.49□□□□□ -1.53
SCN1A-214ENST00000637038 SPATA31A6Q5VVP1 1343 aa5.49□□□□□ -1.53
SCN1A-214ENST00000637038 SAMD9LQ8IVG5 1584 aa5.49□□□□□ -1.53
SCN1A-214ENST00000637038 MYOM1P52179 1685 aa5.49□□□□□ -1.53
SCN1A-214ENST00000637038 ZMYM4Q5VZL5 1548 aa5.49□□□□□ -1.53
SCN1A-214ENST00000637038 ARHGEF12Q9NZN5 1544 aa5.49□□□□□ -1.53
SCN1A-214ENST00000637038 RAPGEF3O95398 923 aa5.49□□□□□ -1.53
SCN1A-214ENST00000637038 IFT172Q9UG01 1749 aa5.49□□□□□ -1.53
SCN1A-214ENST00000637038 MADDQ8WXG6 1647 aa5.49□□□□□ -1.53
SCN1A-214ENST00000637038 IFFO2Q5TF58 517 aa5.48□□□□□ -1.53
SCN1A-214ENST00000637038 DHX29Q7Z478 1369 aaKnown RBP5.48□□□□□ -1.53
SCN1A-214ENST00000637038 GPATCH8Q9UKJ3 1502 aaKnown RBP5.48□□□□□ -1.53
SCN1A-214ENST00000637038 C11orf95C9JLR9 678 aaPredicted RBP5.48□□□□□ -1.53
SCN1A-214ENST00000637038 CAMSAP2Q08AD1 1489 aa5.47□□□□□ -1.53
SCN1A-214ENST00000637038 SHANK2Q9UPX8 1470 aa5.47□□□□□ -1.53
SCN1A-214ENST00000637038 RBM33Q96EV2 1170 aaKnown RBP5.47□□□□□ -1.53
SCN1A-214ENST00000637038 DEPDC5O75140 1603 aa5.47□□□□□ -1.53
SCN1A-214ENST00000637038 TRIM52Q96A61 297 aa5.47□□□□□ -1.53
SCN1A-214ENST00000637038 WASHC2AQ641Q2 1341 aa5.47□□□□□ -1.53
SCN1A-214ENST00000637038 ERICH6BQ5W0A0 696 aa5.47□□□□□ -1.53
SCN1A-214ENST00000637038 IQGAP1P46940 1657 aa5.47□□□□□ -1.53
SCN1A-214ENST00000637038 IQGAP3Q86VI3 1631 aa5.46□□□□□ -1.53
SCN1A-214ENST00000637038 BCANQ96GW7 911 aa5.46□□□□□ -1.53
SCN1A-214ENST00000637038 ANP32EQ9BTT0 268 aa5.46□□□□□ -1.53
SCN1A-214ENST00000637038 PLXNC1O60486 1568 aa5.46□□□□□ -1.53
SCN1A-214ENST00000637038 HSPA2P54652 639 aa5.46□□□□□ -1.54
SCN1A-214ENST00000637038 RXRBP28702 533 aa5.46□□□□□ -1.54
SCN1A-214ENST00000637038 EIF4G2P78344 907 aaKnown RBP eCLIP5.45□□□□□ -1.54
SCN1A-214ENST00000637038 AATKQ6ZMQ8 1374 aa5.45□□□□□ -1.54
SCN1A-214ENST00000637038 EID1Q9Y6B2 187 aa5.45□□□□□ -1.54
SCN1A-214ENST00000637038 JCADQ9P266 1359 aa5.45□□□□□ -1.54
SCN1A-214ENST00000637038 KLHL34Q8N239 644 aa5.45□□□□□ -1.54
SCN1A-214ENST00000637038 FER1L4A9Z1Z3 1794 aa5.45□□□□□ -1.54
SCN1A-214ENST00000637038 PLEKHH2Q8IVE3 1493 aa5.44□□□□□ -1.54
SCN1A-214ENST00000637038 REREQ9P2R6 1566 aa5.44□□□□□ -1.54
SCN1A-214ENST00000637038 ZCCHC11Q5TAX3 1644 aaKnown RBP5.44□□□□□ -1.54
SCN1A-214ENST00000637038 PIP4K2BP78356 416 aa5.44□□□□□ -1.54
SCN1A-214ENST00000637038 CEP152O94986 1710 aa5.44□□□□□ -1.54
SCN1A-214ENST00000637038 CCDC184Q52MB2 194 aa5.44□□□□□ -1.54
SCN1A-214ENST00000637038 ZC3H13Q5T200 1668 aaKnown RBP5.44□□□□□ -1.54
SCN1A-214ENST00000637038 PPRC1Q5VV67 1664 aaKnown RBP5.44□□□□□ -1.54
SCN1A-214ENST00000637038 HNRNPUQ00839 825 aaKnown RBP eCLIP5.44□□□□□ -1.54
SCN1A-214ENST00000637038 GRWD1Q9BQ67 446 aaKnown RBP eCLIP5.44□□□□□ -1.542e-6■■■□□ 16.8
SCN1A-214ENST00000637038 SPHKAPQ2M3C7 1700 aa5.44□□□□□ -1.54
SCN1A-214ENST00000637038 SYNMO15061 1565 aa5.43□□□□□ -1.54
SCN1A-214ENST00000637038 RTN4Q9NQC3 1192 aaKnown RBP5.43□□□□□ -1.54
SCN1A-214ENST00000637038 ABCA9Q8IUA7 1624 aa5.43□□□□□ -1.54
SCN1A-214ENST00000637038 ARID3CA6NKF2 412 aa5.43□□□□□ -1.54
SCN1A-214ENST00000637038 HSPA1LP34931 641 aa5.43□□□□□ -1.54
SCN1A-214ENST00000637038 UBE2Q2Q8WVN8 375 aa5.43□□□□□ -1.54
SCN1A-214ENST00000637038 ZNF518AQ6AHZ1 1483 aa5.43□□□□□ -1.54
SCN1A-214ENST00000637038 PRDM15P57071 1507 aaPredicted RBP5.43□□□□□ -1.54
SCN1A-214ENST00000637038 NBPF8Q3BBV2 869 aa5.43□□□□□ -1.54
SCN1A-214ENST00000637038 MROH1Q8NDA8 1641 aa5.43□□□□□ -1.54
SCN1A-214ENST00000637038 VIRMAQ69YN4 1812 aaKnown RBP5.43□□□□□ -1.54
SCN1A-214ENST00000637038 VWDEQ8N2E2 1590 aa5.42□□□□□ -1.54
SCN1A-214ENST00000637038 RALGAPBQ86X10 1494 aa5.42□□□□□ -1.54
SCN1A-214ENST00000637038 RNF123Q5XPI4 1314 aa5.42□□□□□ -1.54
Retrieved 100 of 20,778 RNA–protein pairs in 32.6 ms