RNA–Protein interactions for RNA: ENST00000622668.4

HDAC9-229, Transcript of histone deacetylase 9, humanhuman

TSL 2 BASIC

Gene HDAC9, Length 4,279 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC9-229ENST00000622668 HNRNPUQ00839 825 aaKnown RBP eCLIP12.09□□□□□ -0.47
HDAC9-229ENST00000622668 C9orf84Q5VXU9 1444 aa12.09□□□□□ -0.47
HDAC9-229ENST00000622668 ZNF330Q9Y3S2 320 aaPredicted RBP12.08□□□□□ -0.47
HDAC9-229ENST00000622668 ESCO1Q5FWF5 840 aa12.08□□□□□ -0.48
HDAC9-229ENST00000622668 RBM33Q96EV2 1170 aaKnown RBP12.07□□□□□ -0.48
HDAC9-229ENST00000622668 HECW1Q76N89 1606 aa12.07□□□□□ -0.48
HDAC9-229ENST00000622668 EIF3AQ14152 1382 aaKnown RBP12.06□□□□□ -0.48
HDAC9-229ENST00000622668 PPP6R1Q9UPN7 881 aa12.06□□□□□ -0.48
HDAC9-229ENST00000622668 NUTM2GQ5VZR2 741 aa12.05□□□□□ -0.48
HDAC9-229ENST00000622668 USP35Q9P2H5 1018 aa12.05□□□□□ -0.48
HDAC9-229ENST00000622668 UBAP1LF5GYI3 381 aa12.05□□□□□ -0.48
HDAC9-229ENST00000622668 DAXXQ9UER7 740 aaPredicted RBP12.03□□□□□ -0.48
HDAC9-229ENST00000622668 ATP10BO94823 1461 aa12.02□□□□□ -0.48
HDAC9-229ENST00000622668 DHX57Q6P158 1386 aaKnown RBP12.02□□□□□ -0.48
HDAC9-229ENST00000622668 NUP160Q12769 1436 aa12.02□□□□□ -0.48
HDAC9-229ENST00000622668 WDR7Q9Y4E6 1490 aa12.02□□□□□ -0.48
HDAC9-229ENST00000622668 HSPA5P11021 654 aaKnown RBP12.02□□□□□ -0.49
HDAC9-229ENST00000622668 CFAP70Q5T0N1 1121 aa12.02□□□□□ -0.49
HDAC9-229ENST00000622668 ERICH6Q7L0X2 663 aa12.02□□□□□ -0.49
HDAC9-229ENST00000622668 PMFBP1Q8TBY8 1022 aa12.02□□□□□ -0.49
HDAC9-229ENST00000622668 EVC2Q86UK5 1308 aa12.02□□□□□ -0.49
HDAC9-229ENST00000622668 MSH5O43196 834 aa12.01□□□□□ -0.49
HDAC9-229ENST00000622668 RTF1Q92541 710 aaKnown RBP12.01□□□□□ -0.49
HDAC9-229ENST00000622668 BIVM-ERCC5R4GMW8 1640 aa12□□□□□ -0.49
HDAC9-229ENST00000622668 TIMELESSQ9UNS1 1208 aa12□□□□□ -0.49
HDAC9-229ENST00000622668 ADAMTS12P58397 1594 aa12□□□□□ -0.49
HDAC9-229ENST00000622668 SYTL4Q96C24 671 aaPredicted RBP12□□□□□ -0.49
HDAC9-229ENST00000622668 ST20-MTHFSA0A0A6YYL1 179 aa12□□□□□ -0.49
HDAC9-229ENST00000622668 EHBP1L1Q8N3D4 1523 aa11.99□□□□□ -0.49
HDAC9-229ENST00000622668 XPCQ01831 940 aaPredicted RBP11.99□□□□□ -0.49
HDAC9-229ENST00000622668 COG3Q96JB2 828 aa11.98□□□□□ -0.49
HDAC9-229ENST00000622668 MIA2Q96PC5 1412 aa11.98□□□□□ -0.49
HDAC9-229ENST00000622668 ABCC2Q92887 1545 aa11.98□□□□□ -0.49
HDAC9-229ENST00000622668 U2AF1L5P0DN76 240 aaPredicted RBP11.98□□□□□ -0.49
HDAC9-229ENST00000622668 U2AF1Q01081 240 aaKnown RBP eCLIP11.98□□□□□ -0.49
HDAC9-229ENST00000622668 IDI1Q13907 227 aa11.98□□□□□ -0.49
HDAC9-229ENST00000622668 NLRP6P59044 892 aa11.97□□□□□ -0.49
HDAC9-229ENST00000622668 STRN4Q9NRL3 753 aa11.97□□□□□ -0.49
HDAC9-229ENST00000622668 TOM1O60784 492 aa11.97□□□□□ -0.49
HDAC9-229ENST00000622668 PRAM1Q96QH2 718 aa11.97□□□□□ -0.49
HDAC9-229ENST00000622668 CCDC141Q6ZP82 1450 aa11.96□□□□□ -0.49
HDAC9-229ENST00000622668 CENPJQ9HC77 1338 aaPredicted RBP11.96□□□□□ -0.49
HDAC9-229ENST00000622668 GPRASP1Q5JY77 1395 aa11.96□□□□□ -0.5
HDAC9-229ENST00000622668 SF3B2Q13435 895 aaKnown RBP11.95□□□□□ -0.5
HDAC9-229ENST00000622668 PNNQ9H307 717 aaKnown RBP11.95□□□□□ -0.5
HDAC9-229ENST00000622668 CEP170Q5SW79 1584 aa11.95□□□□□ -0.5
HDAC9-229ENST00000622668 KLHL34Q8N239 644 aa11.95□□□□□ -0.5
HDAC9-229ENST00000622668 ABTB2Q8N961 1025 aa11.95□□□□□ -0.5
HDAC9-229ENST00000622668 NLRP2Q9NX02 1062 aa11.95□□□□□ -0.5
HDAC9-229ENST00000622668 KIF14Q15058 1648 aa11.95□□□□□ -0.5
HDAC9-229ENST00000622668 CABP2Q9NPB3 220 aa11.94□□□□□ -0.5
HDAC9-229ENST00000622668 ADAMTS2O95450 1211 aa11.94□□□□□ -0.5
HDAC9-229ENST00000622668 PLCH2O75038 1416 aa11.94□□□□□ -0.5
HDAC9-229ENST00000622668 PRDM11Q9NQV5 511 aa11.91□□□□□ -0.5
HDAC9-229ENST00000622668 AMOTL2Q9Y2J4 779 aa11.91□□□□□ -0.5
HDAC9-229ENST00000622668 TNRQ92752 1358 aa11.91□□□□□ -0.5
HDAC9-229ENST00000622668 DAPK1P53355 1430 aa11.91□□□□□ -0.5
HDAC9-229ENST00000622668 STAC3Q96MF2 364 aa11.91□□□□□ -0.5
HDAC9-229ENST00000622668 DHX29Q7Z478 1369 aaKnown RBP11.9□□□□□ -0.5
HDAC9-229ENST00000622668 NUP153P49790 1475 aaKnown RBP11.9□□□□□ -0.5
HDAC9-229ENST00000622668 NGLY1Q96IV0 654 aa11.9□□□□□ -0.5
HDAC9-229ENST00000622668 NCKAP5LQ9HCH0 1330 aa11.9□□□□□ -0.51
HDAC9-229ENST00000622668 FOXO3O43524 673 aa11.89□□□□□ -0.51
HDAC9-229ENST00000622668 PCF11O94913 1555 aaKnown RBP11.89□□□□□ -0.51
HDAC9-229ENST00000622668 GOLGA6L2Q8N9W4 650 aaPredicted RBP11.89□□□□□ -0.51
HDAC9-229ENST00000622668 THOC2Q8NI27 1593 aaKnown RBP11.89□□□□□ -0.51
HDAC9-229ENST00000622668 GTF2E1P29083 439 aaPredicted RBP11.89□□□□□ -0.51
HDAC9-229ENST00000622668 CAMSAP2Q08AD1 1489 aa11.88□□□□□ -0.51
HDAC9-229ENST00000622668 RAPGEF4Q8WZA2 1011 aa11.88□□□□□ -0.51
HDAC9-229ENST00000622668 ZNF518AQ6AHZ1 1483 aa11.87□□□□□ -0.51
HDAC9-229ENST00000622668 UGGT2Q9NYU1 1516 aa11.87□□□□□ -0.51
HDAC9-229ENST00000622668 WAPLQ7Z5K2 1190 aa11.87□□□□□ -0.51
HDAC9-229ENST00000622668 MYH16Q9H6N6 1097 aa11.87□□□□□ -0.51
HDAC9-229ENST00000622668 ERBINQ96RT1 1412 aa11.87□□□□□ -0.51
HDAC9-229ENST00000622668 RRBP1Q9P2E9 1410 aaKnown RBP11.87□□□□□ -0.51
HDAC9-229ENST00000622668 TIAM1Q13009 1591 aa11.86□□□□□ -0.51
HDAC9-229ENST00000622668 C1orf141Q5JVX7 400 aa11.86□□□□□ -0.51
HDAC9-229ENST00000622668 PANK3Q9H999 370 aa11.86□□□□□ -0.51
HDAC9-229ENST00000622668 RAPGEF6Q8TEU7 1601 aa11.86□□□□□ -0.51
HDAC9-229ENST00000622668 ZC3H6P61129 1189 aaKnown RBP11.86□□□□□ -0.51
HDAC9-229ENST00000622668 CADPS2Q86UW7 1296 aa11.86□□□□□ -0.51
HDAC9-229ENST00000622668 TRAPPC8Q9Y2L5 1435 aa11.86□□□□□ -0.51
HDAC9-229ENST00000622668 KIAA0556O60303 1618 aa11.85□□□□□ -0.51
HDAC9-229ENST00000622668 CGNL1Q0VF96 1302 aa11.85□□□□□ -0.51
HDAC9-229ENST00000622668 TMX4Q9H1E5 349 aaPredicted RBP11.85□□□□□ -0.51
HDAC9-229ENST00000622668 GGNBP2Q9H3C7 697 aa11.85□□□□□ -0.51
HDAC9-229ENST00000622668 SUPT6HQ7KZ85 1726 aaKnown RBP11.85□□□□□ -0.51
HDAC9-229ENST00000622668 KTN1Q86UP2 1357 aaKnown RBP11.85□□□□□ -0.51
HDAC9-229ENST00000622668 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP11.85□□□□□ -0.51
HDAC9-229ENST00000622668 TOM1L2Q6ZVM7 507 aa11.84□□□□□ -0.51
HDAC9-229ENST00000622668 GPATCH8Q9UKJ3 1502 aaKnown RBP11.84□□□□□ -0.51
HDAC9-229ENST00000622668 TARBP1Q13395 1621 aaKnown RBP11.84□□□□□ -0.51
HDAC9-229ENST00000622668 DCAF8L1A6NGE4 600 aa11.84□□□□□ -0.51
HDAC9-229ENST00000622668 NBPF1Q3BBV0 1214 aa11.84□□□□□ -0.51
HDAC9-229ENST00000622668 NLRP13Q86W25 1043 aa11.84□□□□□ -0.51
HDAC9-229ENST00000622668 A2MP01023 1474 aa11.84□□□□□ -0.51
HDAC9-229ENST00000622668 RPGRIP1LQ68CZ1 1315 aa11.84□□□□□ -0.51
HDAC9-229ENST00000622668 HFM1A2PYH4 1435 aa11.83□□□□□ -0.52
HDAC9-229ENST00000622668 CDK19Q9BWU1 502 aa11.83□□□□□ -0.52
HDAC9-229ENST00000622668 ZMYM3Q14202 1370 aa11.83□□□□□ -0.52
Retrieved 100 of 20,778 RNA–protein pairs in 11.3 ms