RNA–Protein interactions for RNA: ENST00000616390.1

CACNA1C-231, Transcript of calcium voltage-gated channel subunit alpha1 C, human

TSL 2 BASIC

Gene CACNA1C, Length 2,833 nt, Biotype protein coding, Subcellular localisation Cytosol .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CACNA1C-231	ENST00000616390	DHX29	Q7Z478	1369 aa	Known RBP	18.92	■□□□□ 0.62
CACNA1C-231	ENST00000616390	RSPH4A	Q5TD94	716 aa		18.92	■□□□□ 0.62
CACNA1C-231	ENST00000616390	ARHGEF5	Q12774	1597 aa		18.91	■□□□□ 0.62
CACNA1C-231	ENST00000616390	FAM135A	Q9P2D6	1515 aa		18.91	■□□□□ 0.62
CACNA1C-231	ENST00000616390	NBPF1	Q3BBV0	1214 aa		18.91	■□□□□ 0.62
CACNA1C-231	ENST00000616390	GEMIN5	Q8TEQ6	1508 aa	Known RBP eCLIP	18.9	■□□□□ 0.62
CACNA1C-231	ENST00000616390	CCDC144A	A2RUR9	1427 aa		18.89	■□□□□ 0.62
CACNA1C-231	ENST00000616390	TMC1	Q8TDI8	760 aa		18.89	■□□□□ 0.61
CACNA1C-231	ENST00000616390	ZBED9	Q6R2W3	1325 aa		18.89	■□□□□ 0.61
CACNA1C-231	ENST00000616390	PODXL2	Q9NZ53	605 aa		18.88	■□□□□ 0.61
CACNA1C-231	ENST00000616390	RALGAPB	Q86X10	1494 aa		18.88	■□□□□ 0.61
CACNA1C-231	ENST00000616390	PLEKHH2	Q8IVE3	1493 aa		18.87	■□□□□ 0.61
CACNA1C-231	ENST00000616390	UHRF1BP1	Q6BDS2	1440 aa		18.87	■□□□□ 0.61
CACNA1C-231	ENST00000616390	RBM19	Q9Y4C8	960 aa	Known RBP	18.87	■□□□□ 0.61
CACNA1C-231	ENST00000616390	MYT1L	Q9UL68	1186 aa		18.86	■□□□□ 0.61
CACNA1C-231	ENST00000616390	KDM5D	Q9BY66	1539 aa		18.86	■□□□□ 0.61
CACNA1C-231	ENST00000616390	SALL2	Q9Y467	1007 aa	Predicted RBP	18.84	■□□□□ 0.61
CACNA1C-231	ENST00000616390	ABCC2	Q92887	1545 aa		18.83	■□□□□ 0.61
CACNA1C-231	ENST00000616390	MYO5C	Q9NQX4	1742 aa		18.83	■□□□□ 0.61
CACNA1C-231	ENST00000616390	EFCAB2	Q5VUJ9	269 aa		18.82	■□□□□ 0.6
CACNA1C-231	ENST00000616390	B4GALNT3	Q6L9W6	998 aa		18.82	■□□□□ 0.6
CACNA1C-231	ENST00000616390	ARHGEF12	Q9NZN5	1544 aa		18.82	■□□□□ 0.6
CACNA1C-231	ENST00000616390	AFAP1	Q8N556	730 aa		18.82	■□□□□ 0.6
CACNA1C-231	ENST00000616390	SHROOM2	Q13796	1616 aa		18.81	■□□□□ 0.6
CACNA1C-231	ENST00000616390	ARID4B	Q4LE39	1312 aa	Predicted RBP	18.81	■□□□□ 0.6
CACNA1C-231	ENST00000616390	ANO8	Q9HCE9	1232 aa	Predicted RBP	18.8	■□□□□ 0.6
CACNA1C-231	ENST00000616390	PLA2R1	Q13018	1463 aa		18.78	■□□□□ 0.6
CACNA1C-231	ENST00000616390	PNISR	Q8TF01	805 aa	Known RBP	18.78	■□□□□ 0.6
CACNA1C-231	ENST00000616390	PPP4R2	Q9NY27	417 aa		18.77	■□□□□ 0.6
CACNA1C-231	ENST00000616390	PRAG1	Q86YV5	1406 aa		18.77	■□□□□ 0.6
CACNA1C-231	ENST00000616390	CC2D1B	Q5T0F9	858 aa	Known RBP	18.76	■□□□□ 0.59
CACNA1C-231	ENST00000616390	ZCCHC11	Q5TAX3	1644 aa	Known RBP	18.76	■□□□□ 0.59
CACNA1C-231	ENST00000616390	TRAPPC8	Q9Y2L5	1435 aa		18.76	■□□□□ 0.59
CACNA1C-231	ENST00000616390	SPAG9	O60271	1321 aa	Known RBP	18.74	■□□□□ 0.59
CACNA1C-231	ENST00000616390	A2M	P01023	1474 aa		18.74	■□□□□ 0.59
CACNA1C-231	ENST00000616390	PLCH2	O75038	1416 aa		18.74	■□□□□ 0.59
CACNA1C-231	ENST00000616390	MYBBP1A	Q9BQG0	1328 aa	Known RBP	18.72	■□□□□ 0.59
CACNA1C-231	ENST00000616390	TRPM1	Q7Z4N2	1603 aa		18.72	■□□□□ 0.59
CACNA1C-231	ENST00000616390	UNC13B	O14795	1591 aa		18.71	■□□□□ 0.59
CACNA1C-231	ENST00000616390	NUDC	Q9Y266	331 aa		18.71	■□□□□ 0.59
CACNA1C-231	ENST00000616390	MAST1	Q9Y2H9	1570 aa		18.71	■□□□□ 0.59
CACNA1C-231	ENST00000616390	DUOX2	Q9NRD8	1548 aa		18.7	■□□□□ 0.58
CACNA1C-231	ENST00000616390	DISP3	Q9P2K9	1392 aa		18.69	■□□□□ 0.58
CACNA1C-231	ENST00000616390	RALBP1	Q15311	655 aa		18.69	■□□□□ 0.58
CACNA1C-231	ENST00000616390	PANK3	Q9H999	370 aa		18.69	■□□□□ 0.58
CACNA1C-231	ENST00000616390	PLXNC1	O60486	1568 aa		18.68	■□□□□ 0.58
CACNA1C-231	ENST00000616390	IQGAP3	Q86VI3	1631 aa		18.68	■□□□□ 0.58
CACNA1C-231	ENST00000616390	KTN1	Q86UP2	1357 aa	Known RBP	18.67	■□□□□ 0.58
CACNA1C-231	ENST00000616390	TESK2	Q96S53	571 aa		18.66	■□□□□ 0.58
CACNA1C-231	ENST00000616390	KIF3B	O15066	747 aa		18.66	■□□□□ 0.58
CACNA1C-231	ENST00000616390	ERICH6B	Q5W0A0	696 aa		18.66	■□□□□ 0.58
CACNA1C-231	ENST00000616390	SMG6	Q86US8	1419 aa	Known RBP	18.66	■□□□□ 0.58
CACNA1C-231	ENST00000616390	ERBIN	Q96RT1	1412 aa		18.65	■□□□□ 0.58
CACNA1C-231	ENST00000616390	TMF1	P82094	1093 aa		18.64	■□□□□ 0.58
CACNA1C-231	ENST00000616390	ABCC1	P33527	1531 aa		18.64	■□□□□ 0.57
CACNA1C-231	ENST00000616390	BRD4	O60885	1362 aa	Predicted RBP	18.64	■□□□□ 0.57
CACNA1C-231	ENST00000616390	PER1	O15534	1290 aa	Predicted RBP	18.64	■□□□□ 0.57
CACNA1C-231	ENST00000616390	CLASP1	Q7Z460	1538 aa		18.63	■□□□□ 0.57
CACNA1C-231	ENST00000616390	NLRP13	Q86W25	1043 aa		18.63	■□□□□ 0.57
CACNA1C-231	ENST00000616390	CCDC136	Q96JN2	1154 aa		18.6	■□□□□ 0.57
CACNA1C-231	ENST00000616390	SCAPER	Q9BY12	1400 aa		18.6	■□□□□ 0.57
CACNA1C-231	ENST00000616390		E9PCH4	1651 aa		18.6	■□□□□ 0.57
CACNA1C-231	ENST00000616390	PKNOX2	Q96KN3	472 aa		18.59	■□□□□ 0.57
CACNA1C-231	ENST00000616390	KLHL34	Q8N239	644 aa		18.59	■□□□□ 0.57
CACNA1C-231	ENST00000616390	GPRASP1	Q5JY77	1395 aa		18.59	■□□□□ 0.57
CACNA1C-231	ENST00000616390	UHRF1BP1L	A0JNW5	1464 aa		18.58	■□□□□ 0.57
CACNA1C-231	ENST00000616390	LRPPRC	P42704	1394 aa	Known RBP	18.57	■□□□□ 0.56
CACNA1C-231	ENST00000616390	ARX	Q96QS3	562 aa		18.57	■□□□□ 0.56
CACNA1C-231	ENST00000616390	COL17A1	Q9UMD9	1497 aa	Predicted RBP	18.57	■□□□□ 0.56
CACNA1C-231	ENST00000616390	PARD3	Q8TEW0	1356 aa		18.57	■□□□□ 0.56
CACNA1C-231	ENST00000616390	PRDM15	P57071	1507 aa	Predicted RBP	18.57	■□□□□ 0.56
CACNA1C-231	ENST00000616390	FANCA	O15360	1455 aa		18.57	■□□□□ 0.56
CACNA1C-231	ENST00000616390	CDCA7L	Q96GN5	454 aa		18.56	■□□□□ 0.56
CACNA1C-231	ENST00000616390	MAGI2	Q86UL8	1455 aa		18.55	■□□□□ 0.56
CACNA1C-231	ENST00000616390	MSH5	O43196	834 aa		18.55	■□□□□ 0.56
CACNA1C-231	ENST00000616390	CHGA	P10645	457 aa	Known RBP	18.55	■□□□□ 0.56
CACNA1C-231	ENST00000616390	WDR7	Q9Y4E6	1490 aa		18.54	■□□□□ 0.56
CACNA1C-231	ENST00000616390	EIF2AK4	Q9P2K8	1649 aa	Known RBP	18.53	■□□□□ 0.56
CACNA1C-231	ENST00000616390	KNSTRN	Q9Y448	316 aa		18.53	■□□□□ 0.56
CACNA1C-231	ENST00000616390	KANK1	Q14678	1352 aa		18.53	■□□□□ 0.56
CACNA1C-231	ENST00000616390	ATP10A	O60312	1499 aa		18.53	■□□□□ 0.56
CACNA1C-231	ENST00000616390	ZFYVE16	Q7Z3T8	1539 aa		18.53	■□□□□ 0.56
CACNA1C-231	ENST00000616390	CFAP65	Q6ZU64	1925 aa	Known RBP	18.52	■□□□□ 0.56
CACNA1C-231	ENST00000616390	ADGRL1	O94910	1474 aa		18.52	■□□□□ 0.55
CACNA1C-231	ENST00000616390	CFAP70	Q5T0N1	1121 aa		18.5	■□□□□ 0.55
CACNA1C-231	ENST00000616390	RCAN3	Q9UKA8	241 aa		18.5	■□□□□ 0.55
CACNA1C-231	ENST00000616390	ATP7A	Q04656	1500 aa		18.49	■□□□□ 0.55
CACNA1C-231	ENST00000616390	RTEL1-TNFRSF6B	F6WH68	1400 aa		18.49	■□□□□ 0.55
CACNA1C-231	ENST00000616390	SENP3	Q9H4L4	574 aa	Predicted RBP	18.49	■□□□□ 0.55
CACNA1C-231	ENST00000616390	CLTCL1	P53675	1640 aa		18.49	■□□□□ 0.55
CACNA1C-231	ENST00000616390	NPM1	P06748	294 aa	Known RBP eCLIP	18.49	■□□□□ 0.55
CACNA1C-231	ENST00000616390	RNF123	Q5XPI4	1314 aa		18.48	■□□□□ 0.55
CACNA1C-231	ENST00000616390	GGT6	Q6P531	493 aa		18.48	■□□□□ 0.55
CACNA1C-231	ENST00000616390	SPHKAP	Q2M3C7	1700 aa		18.48	■□□□□ 0.55
CACNA1C-231	ENST00000616390	UGGT1	Q9NYU2	1555 aa		18.48	■□□□□ 0.55
CACNA1C-231	ENST00000616390	EXOC6	Q8TAG9	804 aa		18.48	■□□□□ 0.55
CACNA1C-231	ENST00000616390	ASXL2	Q76L83	1435 aa		18.47	■□□□□ 0.55
CACNA1C-231	ENST00000616390	PLIN1	O60240	522 aa		18.47	■□□□□ 0.55
CACNA1C-231	ENST00000616390	ADAMTS8	Q9UP79	889 aa		18.47	■□□□□ 0.55
CACNA1C-231	ENST00000616390	RRP1	P56182	461 aa	Known RBP	18.47	■□□□□ 0.55

Retrieved 100 of 20,778 RNA–protein pairs in 14.5 ms