RNA–Protein interactions for RNA: ENST00000616247.4

LMO3-235, Transcript of LIM domain only 3, humanhuman

TSL 5 BASIC

Gene LMO3, Length 3,227 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LMO3-235ENST00000616247 CCDC146Q8IYE0 955 aa8.62□□□□□ -1.03
LMO3-235ENST00000616247 UPF2Q9HAU5 1272 aaKnown RBP8.62□□□□□ -1.03
LMO3-235ENST00000616247 BRD4O60885 1362 aaPredicted RBP8.62□□□□□ -1.03
LMO3-235ENST00000616247 L1TD1Q5T7N2 865 aaKnown RBP8.61□□□□□ -1.03
LMO3-235ENST00000616247 CFDP1Q9UEE9 299 aaPredicted RBP8.61□□□□□ -1.03
LMO3-235ENST00000616247 GRWD1Q9BQ67 446 aaKnown RBP eCLIP8.61□□□□□ -1.03
LMO3-235ENST00000616247 NPM3O75607 178 aaKnown RBP8.6□□□□□ -1.03
LMO3-235ENST00000616247 NEUROD2Q15784 382 aa8.6□□□□□ -1.03
LMO3-235ENST00000616247 C8orf34Q49A92 452 aa8.6□□□□□ -1.03
LMO3-235ENST00000616247 DNMBPQ6XZF7 1577 aa8.6□□□□□ -1.03
LMO3-235ENST00000616247 ADAMTS8Q9UP79 889 aa8.6□□□□□ -1.03
LMO3-235ENST00000616247 PANK3Q9H999 370 aa8.6□□□□□ -1.03
LMO3-235ENST00000616247 GOLGA6L3A6NEY3 463 aa8.59□□□□□ -1.03
LMO3-235ENST00000616247 ZMYND15Q9H091 742 aa8.59□□□□□ -1.03
LMO3-235ENST00000616247 ROCK2O75116 1388 aaKnown RBP8.59□□□□□ -1.03
LMO3-235ENST00000616247 RPRD2Q5VT52 1461 aaKnown RBP8.58□□□□□ -1.04
LMO3-235ENST00000616247 SPATA31E1Q6ZUB1 1445 aa8.58□□□□□ -1.04
LMO3-235ENST00000616247 GOLGA2Q08379 1002 aa8.58□□□□□ -1.04
LMO3-235ENST00000616247 PANK2Q9BZ23 570 aa8.58□□□□□ -1.04
LMO3-235ENST00000616247 MRC2Q9UBG0 1479 aa8.58□□□□□ -1.04
LMO3-235ENST00000616247 DENND4BO75064 1496 aaPredicted RBP8.57□□□□□ -1.04
LMO3-235ENST00000616247 CFAP43Q8NDM7 1665 aa8.57□□□□□ -1.04
LMO3-235ENST00000616247 BCAR3O75815 825 aa8.57□□□□□ -1.04
LMO3-235ENST00000616247 SEC24BO95487 1268 aa8.57□□□□□ -1.04
LMO3-235ENST00000616247 TRIM44Q96DX7 344 aaPredicted RBP8.57□□□□□ -1.04
LMO3-235ENST00000616247 ARID3AQ99856 593 aa8.57□□□□□ -1.04
LMO3-235ENST00000616247 NUP155O75694 1391 aa8.57□□□□□ -1.04
LMO3-235ENST00000616247 NBPF1Q3BBV0 1214 aa8.57□□□□□ -1.04
LMO3-235ENST00000616247 COG6Q9Y2V7 657 aa8.57□□□□□ -1.04
LMO3-235ENST00000616247 KDM6BO15054 1643 aa8.56□□□□□ -1.04
LMO3-235ENST00000616247 KNSTRNQ9Y448 316 aa8.56□□□□□ -1.04
LMO3-235ENST00000616247 MIA2Q96PC5 1412 aa8.56□□□□□ -1.04
LMO3-235ENST00000616247 LRPPRCP42704 1394 aaKnown RBP8.55□□□□□ -1.04
LMO3-235ENST00000616247 CLUAP1Q96AJ1 413 aa8.55□□□□□ -1.04
LMO3-235ENST00000616247 ZNF608Q9ULD9 1512 aaPredicted RBP8.55□□□□□ -1.04
LMO3-235ENST00000616247 PANK1Q8TE04 598 aa8.55□□□□□ -1.04
LMO3-235ENST00000616247 APAF1O14727 1248 aa8.54□□□□□ -1.04
LMO3-235ENST00000616247 BCL2L13Q9BXK5 485 aa8.54□□□□□ -1.04
LMO3-235ENST00000616247 XRCC6P12956 609 aaKnown RBP eCLIP8.54□□□□□ -1.04
LMO3-235ENST00000616247 MYH16Q9H6N6 1097 aa8.54□□□□□ -1.04
LMO3-235ENST00000616247 IGHDP01880 384 aa8.54□□□□□ -1.04
LMO3-235ENST00000616247 TSPY4P0CV99 314 aa8.54□□□□□ -1.04
LMO3-235ENST00000616247 TSPY10P0CW01 314 aa8.54□□□□□ -1.04
LMO3-235ENST00000616247 MFAP1P55081 439 aaKnown RBP8.53□□□□□ -1.04
LMO3-235ENST00000616247 TEX14Q8IWB6 1497 aa8.53□□□□□ -1.04
LMO3-235ENST00000616247 KDM2BQ8NHM5 1336 aa8.53□□□□□ -1.04
LMO3-235ENST00000616247 THOC2Q8NI27 1593 aaKnown RBP8.53□□□□□ -1.04
LMO3-235ENST00000616247 EFCAB5A4FU69 1503 aa8.52□□□□□ -1.04
LMO3-235ENST00000616247 TNNT2P45379 298 aaPredicted RBP8.52□□□□□ -1.04
LMO3-235ENST00000616247 FOXD4L1Q9NU39 408 aa8.52□□□□□ -1.04
LMO3-235ENST00000616247 DUSP27Q5VZP5 1158 aa8.52□□□□□ -1.05
LMO3-235ENST00000616247 SNAPC4Q5SXM2 1469 aa8.52□□□□□ -1.05
LMO3-235ENST00000616247 TMF1P82094 1093 aa8.52□□□□□ -1.05
LMO3-235ENST00000616247 FBLN2P98095 1184 aa8.52□□□□□ -1.05
LMO3-235ENST00000616247 WDR62O43379 1518 aa8.51□□□□□ -1.05
LMO3-235ENST00000616247 ABCA10Q8WWZ4 1543 aa8.51□□□□□ -1.05
LMO3-235ENST00000616247 SUPT6HQ7KZ85 1726 aaKnown RBP8.51□□□□□ -1.05
LMO3-235ENST00000616247 CDK13Q14004 1512 aaKnown RBP8.51□□□□□ -1.05
LMO3-235ENST00000616247 TRAK2O60296 914 aa8.51□□□□□ -1.05
LMO3-235ENST00000616247 RRP7AQ9Y3A4 280 aaKnown RBP8.5□□□□□ -1.05
LMO3-235ENST00000616247 DAPK1P53355 1430 aa8.5□□□□□ -1.05
LMO3-235ENST00000616247 TARBP1Q13395 1621 aaKnown RBP8.5□□□□□ -1.05
LMO3-235ENST00000616247 EHBP1L1Q8N3D4 1523 aa8.5□□□□□ -1.05
LMO3-235ENST00000616247 TBC1D2Q9BYX2 928 aa8.5□□□□□ -1.05
LMO3-235ENST00000616247 ZBTB7CA1YPR0 619 aa8.5□□□□□ -1.05
LMO3-235ENST00000616247 MCM4P33991 863 aa8.5□□□□□ -1.05
LMO3-235ENST00000616247 ABCC5O15440 1437 aa8.49□□□□□ -1.05
LMO3-235ENST00000616247 KIAA1107Q9UPP5 1409 aa8.49□□□□□ -1.05
LMO3-235ENST00000616247 SPINK5Q9NQ38 1064 aaPredicted RBP8.49□□□□□ -1.05
LMO3-235ENST00000616247 NCLP19338 710 aaKnown RBP8.48□□□□□ -1.05
LMO3-235ENST00000616247 GAPVD1Q14C86 1478 aa8.48□□□□□ -1.05
LMO3-235ENST00000616247 PER1O15534 1290 aaPredicted RBP8.48□□□□□ -1.05
LMO3-235ENST00000616247 PPP2R1AP30153 589 aa8.48□□□□□ -1.05
LMO3-235ENST00000616247 PLEKHH1Q9ULM0 1364 aa8.48□□□□□ -1.05
LMO3-235ENST00000616247 ESPNB1AK53 854 aa8.48□□□□□ -1.05
LMO3-235ENST00000616247 RBM10P98175 930 aaKnown RBP8.48□□□□□ -1.05
LMO3-235ENST00000616247 ANP32BQ92688 251 aaKnown RBP8.48□□□□□ -1.05
LMO3-235ENST00000616247 CENPJQ9HC77 1338 aaPredicted RBP8.48□□□□□ -1.05
LMO3-235ENST00000616247 MAPK8IP3Q9UPT6 1336 aa8.48□□□□□ -1.05
LMO3-235ENST00000616247 UGGT2Q9NYU1 1516 aa8.47□□□□□ -1.05
LMO3-235ENST00000616247 RRP9O43818 475 aaKnown RBP8.47□□□□□ -1.05
LMO3-235ENST00000616247 HNRNPMP52272 730 aaKnown RBP eCLIP8.47□□□□□ -1.05
LMO3-235ENST00000616247 HSCBQ8IWL3 235 aa8.47□□□□□ -1.05
LMO3-235ENST00000616247 MAGI3Q5TCQ9 1506 aa8.47□□□□□ -1.05
LMO3-235ENST00000616247 BCORL1Q5H9F3 1711 aa8.47□□□□□ -1.05
LMO3-235ENST00000616247 GRIN2BQ13224 1484 aa8.47□□□□□ -1.05
LMO3-235ENST00000616247 HECW1Q76N89 1606 aa8.47□□□□□ -1.05
LMO3-235ENST00000616247 ANKRD30AQ9BXX3 1397 aa8.47□□□□□ -1.05
LMO3-235ENST00000616247 CLCN1P35523 988 aa8.46□□□□□ -1.05
LMO3-235ENST00000616247 SLFN5Q08AF3 891 aa8.46□□□□□ -1.05
LMO3-235ENST00000616247 PDZRN3Q9UPQ7 1066 aa8.46□□□□□ -1.05
LMO3-235ENST00000616247 PARD3Q8TEW0 1356 aa8.46□□□□□ -1.05
LMO3-235ENST00000616247 HSP90AB1P08238 724 aaKnown RBP8.46□□□□□ -1.06
LMO3-235ENST00000616247 MRE11P49959 708 aa8.46□□□□□ -1.06
LMO3-235ENST00000616247 GRPEL1Q9HAV7 217 aa8.46□□□□□ -1.06
LMO3-235ENST00000616247 CHMP5Q9NZZ3 219 aa8.46□□□□□ -1.06
LMO3-235ENST00000616247 USP19O94966 1318 aa8.45□□□□□ -1.06
LMO3-235ENST00000616247 CGNL1Q0VF96 1302 aa8.45□□□□□ -1.06
LMO3-235ENST00000616247 TNNQ9UQP3 1299 aa8.45□□□□□ -1.06
LMO3-235ENST00000616247 FTSJ3Q8IY81 847 aaKnown RBP8.45□□□□□ -1.06
Retrieved 100 of 20,778 RNA–protein pairs in 30 ms