RNA–Protein interactions for RNA: ENST00000614488.4

SCAMP1-205, Transcript of secretory carrier membrane protein 1, humanhuman

TSL 1 (best)

Gene SCAMP1, Length 1,276 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCAMP1-205ENST00000614488 MAP3K7O43318 606 aa12.5□□□□□ -0.41
SCAMP1-205ENST00000614488 RBM33Q96EV2 1170 aaKnown RBP12.5□□□□□ -0.41
SCAMP1-205ENST00000614488 KCNK17Q96T54 332 aa12.5□□□□□ -0.41
SCAMP1-205ENST00000614488 KRTAP3-3Q9BYR6 98 aa12.5□□□□□ -0.41
SCAMP1-205ENST00000614488 KRTAP3-2Q9BYR7 98 aa12.5□□□□□ -0.41
SCAMP1-205ENST00000614488 TULP1O00294 542 aaPredicted RBP12.49□□□□□ -0.41
SCAMP1-205ENST00000614488 C6orf132Q5T0Z8 1188 aa12.49□□□□□ -0.41
SCAMP1-205ENST00000614488 PPP1R3GB7ZBB8 358 aa12.47□□□□□ -0.41
SCAMP1-205ENST00000614488 BCANQ96GW7 911 aa12.47□□□□□ -0.41
SCAMP1-205ENST00000614488 AXIN2Q9Y2T1 843 aa12.47□□□□□ -0.41
SCAMP1-205ENST00000614488 PSEN2P49810 448 aa12.46□□□□□ -0.41
SCAMP1-205ENST00000614488 LSM11P83369 360 aaKnown RBP eCLIP12.45□□□□□ -0.42
SCAMP1-205ENST00000614488 TSR1Q2NL82 804 aaKnown RBP12.45□□□□□ -0.42
SCAMP1-205ENST00000614488 CERKQ8TCT0 537 aa12.43□□□□□ -0.42
SCAMP1-205ENST00000614488 DMRTA1Q5VZB9 504 aa12.42□□□□□ -0.42
SCAMP1-205ENST00000614488 SLC4A5Q9BY07 1137 aa12.42□□□□□ -0.42
SCAMP1-205ENST00000614488 TK2O00142 265 aa12.41□□□□□ -0.42
SCAMP1-205ENST00000614488 COL9A1P20849 921 aa12.41□□□□□ -0.42
SCAMP1-205ENST00000614488 CDHR5Q9HBB8 845 aa12.41□□□□□ -0.42
SCAMP1-205ENST00000614488 RBM26Q5T8P6 1007 aaKnown RBP12.4□□□□□ -0.42
SCAMP1-205ENST00000614488 ZBED2Q9BTP6 218 aa12.39□□□□□ -0.43
SCAMP1-205ENST00000614488 DHX30Q7L2E3 1194 aaKnown RBP eCLIP12.38□□□□□ -0.43
SCAMP1-205ENST00000614488 NUTM2FA1L443 756 aa12.37□□□□□ -0.43
SCAMP1-205ENST00000614488 ADGRD1Q6QNK2 874 aa12.36□□□□□ -0.43
SCAMP1-205ENST00000614488 ANKRD13DQ6ZTN6 518 aa12.36□□□□□ -0.43
SCAMP1-205ENST00000614488 SPNS2Q8IVW8 549 aa12.36□□□□□ -0.43
SCAMP1-205ENST00000614488 NPDC1Q9NQX5 325 aaPredicted RBP12.36□□□□□ -0.43
SCAMP1-205ENST00000614488 RBM27Q9P2N5 1060 aaKnown RBP12.36□□□□□ -0.43
SCAMP1-205ENST00000614488 ONECUT3O60422 494 aaPredicted RBP12.35□□□□□ -0.43
SCAMP1-205ENST00000614488 PTGDRQ13258 359 aa12.35□□□□□ -0.43
SCAMP1-205ENST00000614488 VPS9D1Q9Y2B5 631 aa12.35□□□□□ -0.43
SCAMP1-205ENST00000614488 FCHSD2O94868 740 aa12.34□□□□□ -0.43
SCAMP1-205ENST00000614488 LMOD2Q6P5Q4 547 aa12.34□□□□□ -0.43
SCAMP1-205ENST00000614488 GPIHBP1Q8IV16 184 aa12.34□□□□□ -0.43
SCAMP1-205ENST00000614488 TRIM6-TRIM34B2RNG4 842 aa12.32□□□□□ -0.44
SCAMP1-205ENST00000614488 PRSS12P56730 875 aa12.32□□□□□ -0.44
SCAMP1-205ENST00000614488 GPR37O15354 613 aa12.31□□□□□ -0.44
SCAMP1-205ENST00000614488 MMRN1Q13201 1228 aa12.31□□□□□ -0.44
SCAMP1-205ENST00000614488 PROX2Q3B8N5 592 aa12.31□□□□□ -0.44
SCAMP1-205ENST00000614488 CDCA7LQ96GN5 454 aa12.31□□□□□ -0.44
SCAMP1-205ENST00000614488 HRO43593 1189 aa12.3□□□□□ -0.44
SCAMP1-205ENST00000614488 HIC1Q14526 733 aa12.29□□□□□ -0.44
SCAMP1-205ENST00000614488 RABGEF1Q9UJ41 708 aa12.29□□□□□ -0.44
SCAMP1-205ENST00000614488 TTC13Q8NBP0 860 aa12.28□□□□□ -0.44
SCAMP1-205ENST00000614488 TSKSQ9UJT2 592 aa12.27□□□□□ -0.45
SCAMP1-205ENST00000614488 PADI6Q6TGC4 694 aa12.26□□□□□ -0.45
SCAMP1-205ENST00000614488 NBPF3Q9H094 633 aa12.26□□□□□ -0.45
SCAMP1-205ENST00000614488 BHMG1C9JSJ3 638 aaPredicted RBP12.25□□□□□ -0.45
SCAMP1-205ENST00000614488 PACS2Q86VP3 889 aa12.25□□□□□ -0.45
SCAMP1-205ENST00000614488 GNPATO15228 680 aa12.24□□□□□ -0.45
SCAMP1-205ENST00000614488 KIAA1468Q9P260 1216 aa12.24□□□□□ -0.45
SCAMP1-205ENST00000614488 FAM198AQ9UFP1 575 aa12.24□□□□□ -0.45
SCAMP1-205ENST00000614488 NBPF26B4DH59 902 aa12.22□□□□□ -0.45
SCAMP1-205ENST00000614488 STAC3Q96MF2 364 aa12.21□□□□□ -0.45
SCAMP1-205ENST00000614488 LAPTM4BQ86VI4 370 aa12.2□□□□□ -0.46
SCAMP1-205ENST00000614488 MRPL50Q8N5N7 158 aaKnown RBP12.19□□□□□ -0.46
SCAMP1-205ENST00000614488 ZC3H15Q8WU90 426 aaKnown RBP12.18□□□□□ -0.46
SCAMP1-205ENST00000614488 TATDN2Q93075 761 aa12.18□□□□□ -0.46
SCAMP1-205ENST00000614488 PNMA3Q9UL41 463 aa12.17□□□□□ -0.46
SCAMP1-205ENST00000614488 MYT1LQ9UL68 1186 aa12.17□□□□□ -0.46
SCAMP1-205ENST00000614488 FECHP22830 423 aa12.15□□□□□ -0.46
SCAMP1-205ENST00000614488 FAM98CQ17RN3 349 aaKnown RBP12.15□□□□□ -0.46
SCAMP1-205ENST00000614488 NUDT18Q6ZVK8 323 aa12.15□□□□□ -0.46
SCAMP1-205ENST00000614488 SEPT9Q9UHD8 586 aaPredicted RBP12.15□□□□□ -0.46
SCAMP1-205ENST00000614488 ADGRG1Q9Y653 693 aa12.15□□□□□ -0.46
SCAMP1-205ENST00000614488 C3orf80F5H4A9 247 aa12.14□□□□□ -0.47
SCAMP1-205ENST00000614488 ZMYND10O75800 440 aa12.14□□□□□ -0.47
SCAMP1-205ENST00000614488 MAP2K5Q13163 448 aa12.14□□□□□ -0.47
SCAMP1-205ENST00000614488 RBM46Q8TBY0 533 aaKnown RBP12.13□□□□□ -0.47
SCAMP1-205ENST00000614488 GOLGA8CPA6NN73 597 aa12.12□□□□□ -0.47
SCAMP1-205ENST00000614488 SMAPO00193 183 aa12.12□□□□□ -0.47
SCAMP1-205ENST00000614488 OATP04181 439 aa12.12□□□□□ -0.47
SCAMP1-205ENST00000614488 BARGINQ6ZT62 677 aa12.12□□□□□ -0.47
SCAMP1-205ENST00000614488 EYA1Q99502 592 aa12.12□□□□□ -0.47
SCAMP1-205ENST00000614488 MINK1Q8N4C8 1332 aaPredicted RBP12.11□□□□□ -0.47
SCAMP1-205ENST00000614488 RNF166Q96A37 237 aaPredicted RBP12.1□□□□□ -0.47
SCAMP1-205ENST00000614488 ZFRQ96KR1 1074 aaKnown RBP12.1□□□□□ -0.47
SCAMP1-205ENST00000614488 ANKK1Q8NFD2 765 aa12.08□□□□□ -0.48
SCAMP1-205ENST00000614488 PXYLP1Q8TE99 480 aa12.08□□□□□ -0.48
SCAMP1-205ENST00000614488 IRF6O14896 467 aa12.07□□□□□ -0.48
SCAMP1-205ENST00000614488 FAM161AQ3B820 660 aa12.07□□□□□ -0.48
SCAMP1-205ENST00000614488 METTL3Q86U44 580 aaKnown RBP12.07□□□□□ -0.48
SCAMP1-205ENST00000614488 WNT2BQ93097 391 aa12.07□□□□□ -0.48
SCAMP1-205ENST00000614488 DNAJB2P25686 324 aa12.06□□□□□ -0.48
SCAMP1-205ENST00000614488 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP12.05□□□□□ -0.48
SCAMP1-205ENST00000614488 KCTD12Q96CX2 325 aaKnown RBP12.05□□□□□ -0.48
SCAMP1-205ENST00000614488 CCDC102AQ96A19 550 aa12.04□□□□□ -0.48
SCAMP1-205ENST00000614488 RCCD1A6NED2 376 aa12.03□□□□□ -0.48
SCAMP1-205ENST00000614488 KRI1Q8N9T8 703 aaKnown RBP12.03□□□□□ -0.48
SCAMP1-205ENST00000614488 SOWAHBA6NEL2 793 aa12.02□□□□□ -0.49
SCAMP1-205ENST00000614488 THSD4Q6ZMP0 1018 aa12.02□□□□□ -0.49
SCAMP1-205ENST00000614488 LRCH3Q96II8 777 aa12.02□□□□□ -0.49
SCAMP1-205ENST00000614488 TMEM134Q9H6X4 195 aa12.02□□□□□ -0.49
SCAMP1-205ENST00000614488 HDGFP51858 240 aaKnown RBP12.01□□□□□ -0.49
SCAMP1-205ENST00000614488 SAMD7Q7Z3H4 446 aa12.01□□□□□ -0.49
SCAMP1-205ENST00000614488 CDKN2AIPQ9NXV6 580 aaPredicted RBP12.01□□□□□ -0.49
SCAMP1-205ENST00000614488 SWT1Q5T5J6 900 aaKnown RBP11.99□□□□□ -0.49
SCAMP1-205ENST00000614488 BCAMP50895 628 aa11.97□□□□□ -0.49
SCAMP1-205ENST00000614488 PHOX2BQ99453 314 aa11.97□□□□□ -0.49
SCAMP1-205ENST00000614488 SLC4A3P48751 1232 aa11.96□□□□□ -0.49
Retrieved 100 of 20,778 RNA–protein pairs in 46.6 ms