RNA–Protein interactions for RNA: ENST00000614488.4

SCAMP1-205, Transcript of secretory carrier membrane protein 1, humanhuman

TSL 1 (best)

Gene SCAMP1, Length 1,276 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCAMP1-205ENST00000614488 AEBP2Q6ZN18 517 aaPredicted RBP28.59■■■□□ 2.17
SCAMP1-205ENST00000614488 CHIC1Q5VXU3 224 aa27.93■■■□□ 2.06
SCAMP1-205ENST00000614488 PHF23Q9BUL5 403 aaPredicted RBP24.51■■□□□ 1.51
SCAMP1-205ENST00000614488 SENP3Q9H4L4 574 aaPredicted RBP24.34■■□□□ 1.49
SCAMP1-205ENST00000614488 PLPPR3Q6T4P5 718 aa22.67■■□□□ 1.22
SCAMP1-205ENST00000614488 FOXD1Q16676 465 aa22.55■■□□□ 1.2
SCAMP1-205ENST00000614488 PPP6R1Q9UPN7 881 aa21.61■■□□□ 1.05
SCAMP1-205ENST00000614488 ADRA2BP18089 450 aa21.59■■□□□ 1.05
SCAMP1-205ENST00000614488 PIAS4Q8N2W9 510 aaPredicted RBP21.26■□□□□ 0.99
SCAMP1-205ENST00000614488 MSH5O43196 834 aa20.87■□□□□ 0.93
SCAMP1-205ENST00000614488 POTEDQ86YR6 584 aa20.14■□□□□ 0.81
SCAMP1-205ENST00000614488 PPP4R3CPQ6ZMV5 832 aa19.94■□□□□ 0.78
SCAMP1-205ENST00000614488 SCAF1Q9H7N4 1312 aaKnown RBP19.84■□□□□ 0.77
SCAMP1-205ENST00000614488 MAPK8IP2Q13387 824 aaPredicted RBP19.58■□□□□ 0.72
SCAMP1-205ENST00000614488 NCBP3Q53F19 620 aaKnown RBP19.44■□□□□ 0.7
SCAMP1-205ENST00000614488 CNKSR2Q8WXI2 1034 aa19.42■□□□□ 0.7
SCAMP1-205ENST00000614488 DMRT2Q9Y5R5 561 aa19.41■□□□□ 0.7
SCAMP1-205ENST00000614488 KCNA4P22459 653 aa19.4■□□□□ 0.7
SCAMP1-205ENST00000614488 NPM3O75607 178 aaKnown RBP19.12■□□□□ 0.65
SCAMP1-205ENST00000614488 RNF216Q9NWF9 866 aaPredicted RBP19.06■□□□□ 0.64
SCAMP1-205ENST00000614488 HOXD11P31277 338 aaPredicted RBP19■□□□□ 0.63
SCAMP1-205ENST00000614488 DNAJC5BQ9UF47 199 aa18.69■□□□□ 0.58
SCAMP1-205ENST00000614488 DCAF8L1A6NGE4 600 aa18.5■□□□□ 0.55
SCAMP1-205ENST00000614488 SLC4A1APQ9BWU0 796 aaKnown RBP18.48■□□□□ 0.55
SCAMP1-205ENST00000614488 SLC4A2P04920 1241 aa18.06■□□□□ 0.48
SCAMP1-205ENST00000614488 GRWD1Q9BQ67 446 aaKnown RBP eCLIP18.06■□□□□ 0.484e-6■■■■□ 19.8
SCAMP1-205ENST00000614488 FOXD4L1Q9NU39 408 aa17.92■□□□□ 0.46
SCAMP1-205ENST00000614488 RNF39Q9H2S5 420 aa17.85■□□□□ 0.45
SCAMP1-205ENST00000614488 ZBTB22O15209 634 aa17.84■□□□□ 0.45
SCAMP1-205ENST00000614488 EHMT2Q96KQ7 1210 aa17.84■□□□□ 0.45
SCAMP1-205ENST00000614488 U3KPZ7 1027 aaPredicted RBP17.78■□□□□ 0.44
SCAMP1-205ENST00000614488 CACNB1Q02641 598 aaPredicted RBP17.72■□□□□ 0.43
SCAMP1-205ENST00000614488 MYCNP04198 464 aaPredicted RBP17.71■□□□□ 0.43
SCAMP1-205ENST00000614488 CSRNP3Q8WYN3 585 aa17.7■□□□□ 0.42
SCAMP1-205ENST00000614488 C1QBPQ07021 282 aaKnown RBP17.66■□□□□ 0.42
SCAMP1-205ENST00000614488 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP17.59■□□□□ 0.41
SCAMP1-205ENST00000614488 HNRNPUL2Q1KMD3 747 aaKnown RBP17.59■□□□□ 0.41
SCAMP1-205ENST00000614488 SAMD1Q6SPF0 538 aaPredicted RBP17.52■□□□□ 0.4
SCAMP1-205ENST00000614488 APLP2Q06481 763 aa17.45■□□□□ 0.38
SCAMP1-205ENST00000614488 ATXN8OSP0DMR3 200 aa17.33■□□□□ 0.36
SCAMP1-205ENST00000614488 SPINK5Q9NQ38 1064 aaPredicted RBP17.26■□□□□ 0.35
SCAMP1-205ENST00000614488 CAPN15O75808 1086 aa17.21■□□□□ 0.35
SCAMP1-205ENST00000614488 ZNF219Q9P2Y4 722 aaPredicted RBP17.18■□□□□ 0.34
SCAMP1-205ENST00000614488 ATF5Q9Y2D1 282 aaPredicted RBP17.16■□□□□ 0.34
SCAMP1-205ENST00000614488 TRHP20396 242 aaPredicted RBP17.1■□□□□ 0.33
SCAMP1-205ENST00000614488 DSG3P32926 999 aa16.95■□□□□ 0.3
SCAMP1-205ENST00000614488 ABCB7O75027 752 aa16.86■□□□□ 0.29
SCAMP1-205ENST00000614488 POLA2Q14181 598 aa16.82■□□□□ 0.28
SCAMP1-205ENST00000614488 ZBTB12Q9Y330 459 aaPredicted RBP16.64■□□□□ 0.25
SCAMP1-205ENST00000614488 FBLN2P98095 1184 aa16.51■□□□□ 0.23
SCAMP1-205ENST00000614488 MKRN4PQ13434 485 aaPredicted RBP16.44■□□□□ 0.22
SCAMP1-205ENST00000614488 OSCARQ8IYS5 282 aa16.27■□□□□ 0.2
SCAMP1-205ENST00000614488 RBM42Q9BTD8 480 aaKnown RBP16.22■□□□□ 0.19
SCAMP1-205ENST00000614488 SPDYE2BA6NHP3 402 aa16.16■□□□□ 0.18
SCAMP1-205ENST00000614488 SPDYE6P0CI01 402 aa16.16■□□□□ 0.18
SCAMP1-205ENST00000614488 SPDYE2Q495Y8 402 aa16.16■□□□□ 0.18
SCAMP1-205ENST00000614488 SPDYE4A6NLX3 237 aa16.06■□□□□ 0.16
SCAMP1-205ENST00000614488 ZNF692Q9BU19 519 aaPredicted RBP16.04■□□□□ 0.16
SCAMP1-205ENST00000614488 SSUH2Q9Y2M2 353 aa16.02■□□□□ 0.16
SCAMP1-205ENST00000614488 FKBP8Q14318 412 aa16■□□□□ 0.15
SCAMP1-205ENST00000614488 AKT1S1Q96B36 256 aa15.99■□□□□ 0.15
SCAMP1-205ENST00000614488 PROM2Q8N271 834 aa15.84■□□□□ 0.13
SCAMP1-205ENST00000614488 PABPN1Q86U42 306 aaKnown RBP eCLIP15.82■□□□□ 0.12
SCAMP1-205ENST00000614488 REM2Q8IYK8 340 aaPredicted RBP15.79■□□□□ 0.12
SCAMP1-205ENST00000614488 POTEHQ6S545 545 aa15.77■□□□□ 0.12
SCAMP1-205ENST00000614488 SPDYE1Q8NFV5 336 aaPredicted RBP15.68■□□□□ 0.1
SCAMP1-205ENST00000614488 PITPNM1O00562 1244 aa15.62■□□□□ 0.09
SCAMP1-205ENST00000614488 STAG3Q9UJ98 1225 aa15.61■□□□□ 0.09
SCAMP1-205ENST00000614488 CLEC11AQ9Y240 323 aa15.55■□□□□ 0.08
SCAMP1-205ENST00000614488 CHRDL2Q6WN34 429 aa15.51■□□□□ 0.07
SCAMP1-205ENST00000614488 FBXO3Q9UK99 471 aa15.51■□□□□ 0.07
SCAMP1-205ENST00000614488 PRR29P0C7W0 189 aa15.43■□□□□ 0.06
SCAMP1-205ENST00000614488 FXR2P51116 673 aaKnown RBP eCLIP15.35■□□□□ 0.05
SCAMP1-205ENST00000614488 PIP4P2Q8N4L2 257 aa15.29■□□□□ 0.04
SCAMP1-205ENST00000614488 VASPP50552 380 aaPredicted RBP15.28■□□□□ 0.04
SCAMP1-205ENST00000614488 CREBZFQ9NS37 354 aa15.23■□□□□ 0.03
SCAMP1-205ENST00000614488 PRKAR2AP13861 404 aaKnown RBP15.21■□□□□ 0.03
SCAMP1-205ENST00000614488 PLEKHG5O94827 1062 aa15.2■□□□□ 0.02
SCAMP1-205ENST00000614488 MIER1Q8N108 512 aa15.2■□□□□ 0.02
SCAMP1-205ENST00000614488 PLCD3Q8N3E9 789 aa15.19■□□□□ 0.02
SCAMP1-205ENST00000614488 CHADLQ6NUI6 762 aa15.17■□□□□ 0.02
SCAMP1-205ENST00000614488 ZBTB47Q9UFB7 747 aaPredicted RBP15.1■□□□□ 0.01
SCAMP1-205ENST00000614488 MNX1P50219 401 aaPredicted RBP15.07■□□□□ 0
SCAMP1-205ENST00000614488 FARP1Q9Y4F1 1045 aaPredicted RBP15.07■□□□□ 0
SCAMP1-205ENST00000614488 IFNLR1Q8IU57 520 aaPredicted RBP15.03■□□□□ -0
SCAMP1-205ENST00000614488 NPM1P06748 294 aaKnown RBP eCLIP15.01□□□□□ -0.01
SCAMP1-205ENST00000614488 KLHL34Q8N239 644 aa14.99□□□□□ -0.01
SCAMP1-205ENST00000614488 SPOCK2Q92563 424 aa14.89□□□□□ -0.03
SCAMP1-205ENST00000614488 NUBP1P53384 320 aa14.85□□□□□ -0.03
SCAMP1-205ENST00000614488 C19orf67A6NJJ6 358 aa14.83□□□□□ -0.04
SCAMP1-205ENST00000614488 HAX1O00165 279 aa14.8□□□□□ -0.04
SCAMP1-205ENST00000614488 CD44P16070 742 aaKnown RBP14.79□□□□□ -0.04
SCAMP1-205ENST00000614488 RASEFQ8IZ41 740 aa14.79□□□□□ -0.04
SCAMP1-205ENST00000614488 SP7Q8TDD2 431 aaPredicted RBP14.79□□□□□ -0.04
SCAMP1-205ENST00000614488 PAK3O75914 559 aaPredicted RBP14.76□□□□□ -0.05
SCAMP1-205ENST00000614488 FAM212AQ96EL1 285 aa14.76□□□□□ -0.05
SCAMP1-205ENST00000614488 GSE1Q14687 1217 aa14.7□□□□□ -0.06
SCAMP1-205ENST00000614488 EVX2Q03828 476 aa14.69□□□□□ -0.06
SCAMP1-205ENST00000614488 TSPYL2Q9H2G4 693 aaPredicted RBP14.69□□□□□ -0.06
SCAMP1-205ENST00000614488 ZRANB1Q9UGI0 708 aa14.68□□□□□ -0.06
Retrieved 100 of 20,778 RNA–protein pairs in 65.9 ms