RNA–Protein interactions for RNA: ENST00000613421.4

GGA3-220, Transcript of golgi associated, gamma adaptin ear containing, ARF binding protein 3, humanhuman

TSL 2

Gene GGA3, Length 5,156 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
GGA3-220ENST00000613421 NESP48681 1621 aa17.47■□□□□ 0.39
GGA3-220ENST00000613421 EHBP1L1Q8N3D4 1523 aa17.46■□□□□ 0.39
GGA3-220ENST00000613421 TPRNQ4KMQ1 711 aa17.46■□□□□ 0.39
GGA3-220ENST00000613421 WASHC2AQ641Q2 1341 aa17.46■□□□□ 0.39
GGA3-220ENST00000613421 POLA1P09884 1462 aaPredicted RBP17.45■□□□□ 0.38
GGA3-220ENST00000613421 CLUAP1Q96AJ1 413 aa17.45■□□□□ 0.38
GGA3-220ENST00000613421 EXOC6Q8TAG9 804 aa17.43■□□□□ 0.38
GGA3-220ENST00000613421 MCCP23508 829 aa17.42■□□□□ 0.38
GGA3-220ENST00000613421 KCNJ4P48050 445 aa17.42■□□□□ 0.38
GGA3-220ENST00000613421 MIA2Q96PC5 1412 aa17.42■□□□□ 0.38
GGA3-220ENST00000613421 PLIN1O60240 522 aa17.42■□□□□ 0.38
GGA3-220ENST00000613421 HFM1A2PYH4 1435 aa17.42■□□□□ 0.38
GGA3-220ENST00000613421 APBB1O00213 710 aa17.41■□□□□ 0.38
GGA3-220ENST00000613421 L1TD1Q5T7N2 865 aaKnown RBP17.41■□□□□ 0.38
GGA3-220ENST00000613421 RRP7AQ9Y3A4 280 aaKnown RBP17.41■□□□□ 0.38
GGA3-220ENST00000613421 ZRSR1Q15695 479 aaKnown RBP17.41■□□□□ 0.38
GGA3-220ENST00000613421 E9PSI1 815 aa17.4■□□□□ 0.38
GGA3-220ENST00000613421 SLKQ9H2G2 1235 aaPredicted RBP17.4■□□□□ 0.38
GGA3-220ENST00000613421 CC2D2AQ9P2K1 1620 aa17.4■□□□□ 0.38
GGA3-220ENST00000613421 CENPQQ7L2Z9 268 aaPredicted RBP17.4■□□□□ 0.38
GGA3-220ENST00000613421 CGNL1Q0VF96 1302 aa17.39■□□□□ 0.38
GGA3-220ENST00000613421 VGFO15240 615 aaPredicted RBP17.39■□□□□ 0.38
GGA3-220ENST00000613421 DNMBPQ6XZF7 1577 aa17.38■□□□□ 0.37
GGA3-220ENST00000613421 EVC2Q86UK5 1308 aa17.38■□□□□ 0.37
GGA3-220ENST00000613421 CRBNQ96SW2 442 aa17.38■□□□□ 0.37
GGA3-220ENST00000613421 BICRAQ9NZM4 1560 aa17.37■□□□□ 0.37
GGA3-220ENST00000613421 SUGP2Q8IX01 1082 aaKnown RBP eCLIP17.37■□□□□ 0.37
GGA3-220ENST00000613421 PAK3O75914 559 aaPredicted RBP17.37■□□□□ 0.37
GGA3-220ENST00000613421 MFAP1P55081 439 aaKnown RBP17.37■□□□□ 0.37
GGA3-220ENST00000613421 FGD1P98174 961 aa17.37■□□□□ 0.37
GGA3-220ENST00000613421 TRHP20396 242 aaPredicted RBP17.36■□□□□ 0.37
GGA3-220ENST00000613421 PDE4AP27815 886 aa17.36■□□□□ 0.37
GGA3-220ENST00000613421 LMOD3Q0VAK6 560 aa17.36■□□□□ 0.37
GGA3-220ENST00000613421 HECW1Q76N89 1606 aa17.36■□□□□ 0.37
GGA3-220ENST00000613421 MRC2Q9UBG0 1479 aa17.35■□□□□ 0.37
GGA3-220ENST00000613421 APAF1O14727 1248 aa17.35■□□□□ 0.37
GGA3-220ENST00000613421 STAC3Q96MF2 364 aa17.35■□□□□ 0.37
GGA3-220ENST00000613421 DNTTIP2Q5QJE6 756 aaKnown RBP17.35■□□□□ 0.37
GGA3-220ENST00000613421 NAP1L5Q96NT1 182 aaPredicted RBP17.35■□□□□ 0.37
GGA3-220ENST00000613421 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP17.35■□□□□ 0.37
GGA3-220ENST00000613421 STK31Q9BXU1 1019 aa17.34■□□□□ 0.37
GGA3-220ENST00000613421 GBP4Q96PP9 640 aa17.33■□□□□ 0.37
GGA3-220ENST00000613421 SYNJ2O15056 1496 aa17.33■□□□□ 0.36
GGA3-220ENST00000613421 SUPT6HQ7KZ85 1726 aaKnown RBP17.33■□□□□ 0.36
GGA3-220ENST00000613421 IFT140Q96RY7 1462 aa17.33■□□□□ 0.36
GGA3-220ENST00000613421 PLCB2Q00722 1185 aa17.33■□□□□ 0.36
GGA3-220ENST00000613421 FANCIQ9NVI1 1328 aa17.32■□□□□ 0.36
GGA3-220ENST00000613421 FAM161AQ3B820 660 aa17.32■□□□□ 0.36
GGA3-220ENST00000613421 BCL2L13Q9BXK5 485 aa17.32■□□□□ 0.36
GGA3-220ENST00000613421 BRD4O60885 1362 aaPredicted RBP17.32■□□□□ 0.36
GGA3-220ENST00000613421 NGEFQ8N5V2 710 aa17.32■□□□□ 0.36
GGA3-220ENST00000613421 ARHGAP5Q13017 1502 aa17.32■□□□□ 0.36
GGA3-220ENST00000613421 EID1Q9Y6B2 187 aa17.31■□□□□ 0.36
GGA3-220ENST00000613421 KIAA1107Q9UPP5 1409 aa17.3■□□□□ 0.36
GGA3-220ENST00000613421 WDR97A6NE52 1622 aa17.3■□□□□ 0.36
GGA3-220ENST00000613421 TROQ12816 1431 aaPredicted RBP17.3■□□□□ 0.36
GGA3-220ENST00000613421 PTMSP20962 102 aa17.3■□□□□ 0.36
GGA3-220ENST00000613421 ABCA10Q8WWZ4 1543 aa17.29■□□□□ 0.36
GGA3-220ENST00000613421 HMMRO75330 724 aa17.29■□□□□ 0.36
GGA3-220ENST00000613421 PCF11O94913 1555 aaKnown RBP17.29■□□□□ 0.36
GGA3-220ENST00000613421 ZKSCAN2Q63HK3 967 aa17.29■□□□□ 0.36
GGA3-220ENST00000613421 CHMP4AQ9BY43 222 aa17.29■□□□□ 0.36
GGA3-220ENST00000613421 NBPF8Q3BBV2 869 aa17.29■□□□□ 0.36
GGA3-220ENST00000613421 NGDNQ8NEJ9 315 aaKnown RBP17.29■□□□□ 0.36
GGA3-220ENST00000613421 PRG4Q92954 1404 aaPredicted RBP17.28■□□□□ 0.36
GGA3-220ENST00000613421 KIAA1211Q6ZU35 1233 aa17.28■□□□□ 0.36
GGA3-220ENST00000613421 MINK1Q8N4C8 1332 aaPredicted RBP17.28■□□□□ 0.36
GGA3-220ENST00000613421 C9orf84Q5VXU9 1444 aa17.28■□□□□ 0.36
GGA3-220ENST00000613421 NAP1L2Q9ULW6 460 aaPredicted RBP17.28■□□□□ 0.36
GGA3-220ENST00000613421 COG6Q9Y2V7 657 aa17.28■□□□□ 0.36
GGA3-220ENST00000613421 GOLGA6L4A6NEF3 574 aa17.27■□□□□ 0.36
GGA3-220ENST00000613421 DAPK1P53355 1430 aa17.27■□□□□ 0.36
GGA3-220ENST00000613421 PEG3Q9GZU2 1588 aa17.26■□□□□ 0.35
GGA3-220ENST00000613421 AMPHP49418 695 aa17.26■□□□□ 0.35
GGA3-220ENST00000613421 GZF1Q9H116 711 aaPredicted RBP17.26■□□□□ 0.35
GGA3-220ENST00000613421 NAIPQ13075 1403 aa17.26■□□□□ 0.35
GGA3-220ENST00000613421 SLC4A10Q6U841 1118 aa17.25■□□□□ 0.35
GGA3-220ENST00000613421 NUTM2FA1L443 756 aa17.25■□□□□ 0.35
GGA3-220ENST00000613421 COG3Q96JB2 828 aa17.25■□□□□ 0.35
GGA3-220ENST00000613421 SNAPC4Q5SXM2 1469 aa17.24■□□□□ 0.35
GGA3-220ENST00000613421 MAP3K1Q13233 1512 aa17.24■□□□□ 0.35
GGA3-220ENST00000613421 EPRSP07814 1512 aaKnown RBP17.23■□□□□ 0.35
GGA3-220ENST00000613421 TAOK2Q9UL54 1235 aa17.23■□□□□ 0.35
GGA3-220ENST00000613421 OSCARQ8IYS5 282 aa17.23■□□□□ 0.35
GGA3-220ENST00000613421 USP35Q9P2H5 1018 aa17.23■□□□□ 0.35
GGA3-220ENST00000613421 RUNDC1Q96C34 613 aa17.22■□□□□ 0.35
GGA3-220ENST00000613421 ELL2O00472 640 aaPredicted RBP17.22■□□□□ 0.35
GGA3-220ENST00000613421 CDK13Q14004 1512 aaKnown RBP17.22■□□□□ 0.35
GGA3-220ENST00000613421 CUL7Q14999 1698 aa17.22■□□□□ 0.35
GGA3-220ENST00000613421 MSNP26038 577 aaKnown RBP17.21■□□□□ 0.35
GGA3-220ENST00000613421 AFAP1Q8N556 730 aa17.21■□□□□ 0.35
GGA3-220ENST00000613421 DIAPH1O60610 1272 aaKnown RBP17.21■□□□□ 0.35
GGA3-220ENST00000613421 CSB-PGBD3P0DP91 1061 aa17.21■□□□□ 0.35
GGA3-220ENST00000613421 TRIM6-TRIM34B2RNG4 842 aa17.2■□□□□ 0.34
GGA3-220ENST00000613421 NBPF1Q3BBV0 1214 aa17.2■□□□□ 0.34
GGA3-220ENST00000613421 ADAMTS8Q9UP79 889 aa17.2■□□□□ 0.34
GGA3-220ENST00000613421 GOLGA6L6A8MZA4 724 aa17.19■□□□□ 0.34
GGA3-220ENST00000613421 SLC4A3P48751 1232 aa17.19■□□□□ 0.34
GGA3-220ENST00000613421 HDAC5Q9UQL6 1122 aa17.19■□□□□ 0.34
GGA3-220ENST00000613421 ROCK1Q13464 1354 aa17.18■□□□□ 0.34
Retrieved 100 of 20,778 RNA–protein pairs in 16.2 ms