RNA–Protein interactions for RNA: ENST00000612856.4

FAM3A-221, Transcript of family with sequence similarity 3 member A, humanhuman

TSL 2

Gene FAM3A, Length 3,995 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
FAM3A-221ENST00000612856 NBPF8Q3BBV2 869 aa14.32□□□□□ -0.12
FAM3A-221ENST00000612856 LTV1Q96GA3 475 aaPredicted RBP14.32□□□□□ -0.12
FAM3A-221ENST00000612856 MINK1Q8N4C8 1332 aaPredicted RBP14.32□□□□□ -0.12
FAM3A-221ENST00000612856 TROQ12816 1431 aaPredicted RBP14.32□□□□□ -0.12
FAM3A-221ENST00000612856 MAGI1Q96QZ7 1491 aaPredicted RBP14.32□□□□□ -0.12
FAM3A-221ENST00000612856 DAPK1P53355 1430 aa14.31□□□□□ -0.12
FAM3A-221ENST00000612856 HDGFP51858 240 aaKnown RBP14.31□□□□□ -0.12
FAM3A-221ENST00000612856 ARHGEF11O15085 1522 aa14.31□□□□□ -0.12
FAM3A-221ENST00000612856 UGGT2Q9NYU1 1516 aa14.31□□□□□ -0.12
FAM3A-221ENST00000612856 ABCC5O15440 1437 aa14.3□□□□□ -0.12
FAM3A-221ENST00000612856 ST20-MTHFSA0A0A6YYL1 179 aa14.3□□□□□ -0.12
FAM3A-221ENST00000612856 RSPH4AQ5TD94 716 aa14.3□□□□□ -0.12
FAM3A-221ENST00000612856 PPP4R2Q9NY27 417 aa14.3□□□□□ -0.12
FAM3A-221ENST00000612856 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP14.3□□□□□ -0.12
FAM3A-221ENST00000612856 KIF15Q9NS87 1388 aa14.3□□□□□ -0.12
FAM3A-221ENST00000612856 TMF1P82094 1093 aa14.29□□□□□ -0.12
FAM3A-221ENST00000612856 ROCK2O75116 1388 aaKnown RBP14.29□□□□□ -0.12
FAM3A-221ENST00000612856 CCDC9Q9Y3X0 531 aaKnown RBP14.28□□□□□ -0.12
FAM3A-221ENST00000612856 KIAA0556O60303 1618 aa14.28□□□□□ -0.12
FAM3A-221ENST00000612856 NGDNQ8NEJ9 315 aaKnown RBP14.28□□□□□ -0.12
FAM3A-221ENST00000612856 SLC26A8Q96RN1 970 aa14.28□□□□□ -0.12
FAM3A-221ENST00000612856 CEP170Q5SW79 1584 aa14.27□□□□□ -0.13
FAM3A-221ENST00000612856 MIA2Q96PC5 1412 aa14.26□□□□□ -0.13
FAM3A-221ENST00000612856 NUTM2GQ5VZR2 741 aa14.25□□□□□ -0.13
FAM3A-221ENST00000612856 C11orf95C9JLR9 678 aaPredicted RBP14.25□□□□□ -0.13
FAM3A-221ENST00000612856 WASHC2AQ641Q2 1341 aa14.25□□□□□ -0.13
FAM3A-221ENST00000612856 RAPGEF6Q8TEU7 1601 aa14.24□□□□□ -0.13
FAM3A-221ENST00000612856 LRRIQ1Q96JM4 1722 aa14.24□□□□□ -0.13
FAM3A-221ENST00000612856 CDCA8Q53HL2 280 aa14.24□□□□□ -0.13
FAM3A-221ENST00000612856 MORC1Q86VD1 984 aa14.24□□□□□ -0.13
FAM3A-221ENST00000612856 ANKRD50Q9ULJ7 1429 aa14.23□□□□□ -0.13
FAM3A-221ENST00000612856 CAMSAP2Q08AD1 1489 aa14.23□□□□□ -0.13
FAM3A-221ENST00000612856 CSB-PGBD3P0DP91 1061 aa14.23□□□□□ -0.13
FAM3A-221ENST00000612856 ATP10BO94823 1461 aa14.22□□□□□ -0.13
FAM3A-221ENST00000612856 GPATCH8Q9UKJ3 1502 aaKnown RBP14.22□□□□□ -0.13
FAM3A-221ENST00000612856 KDM6BO15054 1643 aa14.21□□□□□ -0.13
FAM3A-221ENST00000612856 ARHGAP5Q13017 1502 aa14.21□□□□□ -0.13
FAM3A-221ENST00000612856 ERICH6BQ5W0A0 696 aa14.21□□□□□ -0.13
FAM3A-221ENST00000612856 ZNF330Q9Y3S2 320 aaPredicted RBP14.21□□□□□ -0.14
FAM3A-221ENST00000612856 CCDC184Q52MB2 194 aa14.2□□□□□ -0.14
FAM3A-221ENST00000612856 CFAP70Q5T0N1 1121 aa14.2□□□□□ -0.14
FAM3A-221ENST00000612856 CFAP53Q96M91 514 aa14.2□□□□□ -0.14
FAM3A-221ENST00000612856 FBXO31Q5XUX0 539 aaPredicted RBP14.19□□□□□ -0.14
FAM3A-221ENST00000612856 CCDC144AA2RUR9 1427 aa14.19□□□□□ -0.14
FAM3A-221ENST00000612856 C9orf84Q5VXU9 1444 aa14.18□□□□□ -0.14
FAM3A-221ENST00000612856 TXNDC2Q86VQ3 553 aa14.18□□□□□ -0.14
FAM3A-221ENST00000612856 NCOA1Q15788 1441 aa14.17□□□□□ -0.14
FAM3A-221ENST00000612856 KIF14Q15058 1648 aa14.17□□□□□ -0.14
FAM3A-221ENST00000612856 FRAT1Q92837 279 aaPredicted RBP14.17□□□□□ -0.14
FAM3A-221ENST00000612856 NUP160Q12769 1436 aa14.17□□□□□ -0.14
FAM3A-221ENST00000612856 NBPF1Q3BBV0 1214 aa14.16□□□□□ -0.14
FAM3A-221ENST00000612856 U2AF1L5P0DN76 240 aaPredicted RBP14.16□□□□□ -0.14
FAM3A-221ENST00000612856 U2AF1Q01081 240 aaKnown RBP eCLIP14.16□□□□□ -0.14
FAM3A-221ENST00000612856 ANKRD30BQ9BXX2 1392 aa14.16□□□□□ -0.14
FAM3A-221ENST00000612856 IPO9Q96P70 1041 aaKnown RBP14.15□□□□□ -0.14
FAM3A-221ENST00000612856 MAPK8IP3Q9UPT6 1336 aa14.15□□□□□ -0.14
FAM3A-221ENST00000612856 VGFO15240 615 aaPredicted RBP14.15□□□□□ -0.14
FAM3A-221ENST00000612856 AKNAQ7Z591 1439 aa14.15□□□□□ -0.14
FAM3A-221ENST00000612856 HDGFL2Q7Z4V5 671 aaPredicted RBP14.14□□□□□ -0.15
FAM3A-221ENST00000612856 CCDC146Q8IYE0 955 aa14.14□□□□□ -0.15
FAM3A-221ENST00000612856 KIF7Q2M1P5 1343 aa14.14□□□□□ -0.15
FAM3A-221ENST00000612856 USP35Q9P2H5 1018 aa14.14□□□□□ -0.15
FAM3A-221ENST00000612856 CCER2I3L3R5 266 aa14.13□□□□□ -0.15
FAM3A-221ENST00000612856 GLIPR1L2Q4G1C9 344 aa14.13□□□□□ -0.15
FAM3A-221ENST00000612856 TCOF1Q13428 1488 aaKnown RBP14.13□□□□□ -0.15
FAM3A-221ENST00000612856 XPCQ01831 940 aaPredicted RBP14.13□□□□□ -0.15
FAM3A-221ENST00000612856 PMFBP1Q8TBY8 1022 aa14.13□□□□□ -0.15
FAM3A-221ENST00000612856 CD109Q6YHK3 1445 aa14.12□□□□□ -0.15
FAM3A-221ENST00000612856 BRPF3Q9ULD4 1205 aa14.12□□□□□ -0.15
FAM3A-221ENST00000612856 CABP2Q9NPB3 220 aa14.11□□□□□ -0.15
FAM3A-221ENST00000612856 NUDCQ9Y266 331 aa14.11□□□□□ -0.15
FAM3A-221ENST00000612856 RRP7AQ9Y3A4 280 aaKnown RBP14.11□□□□□ -0.15
FAM3A-221ENST00000612856 USP47Q96K76 1375 aa14.11□□□□□ -0.15
FAM3A-221ENST00000612856 PANK3Q9H999 370 aa14.11□□□□□ -0.15
FAM3A-221ENST00000612856 ROCK1Q13464 1354 aa14.11□□□□□ -0.15
FAM3A-221ENST00000612856 PIP4K2BP78356 416 aa14.09□□□□□ -0.15
FAM3A-221ENST00000612856 PRKRIP1Q9H875 184 aaPredicted RBP14.09□□□□□ -0.15
FAM3A-221ENST00000612856 CCDC7Q96M83 1385 aa14.09□□□□□ -0.15
FAM3A-221ENST00000612856 NPHP1O15259 732 aa14.08□□□□□ -0.15
FAM3A-221ENST00000612856 KIAA1107Q9UPP5 1409 aa14.08□□□□□ -0.16
FAM3A-221ENST00000612856 ERCC6L2Q5T890 1561 aa14.08□□□□□ -0.16
FAM3A-221ENST00000612856 AMPHP49418 695 aa14.07□□□□□ -0.16
FAM3A-221ENST00000612856 ELL2O00472 640 aaPredicted RBP14.07□□□□□ -0.16
FAM3A-221ENST00000612856 HSPA2P54652 639 aa14.06□□□□□ -0.16
FAM3A-221ENST00000612856 PROSER2Q86WR7 435 aaPredicted RBP14.06□□□□□ -0.16
FAM3A-221ENST00000612856 GGNBP2Q9H3C7 697 aa14.05□□□□□ -0.16
FAM3A-221ENST00000612856 PSME1Q06323 249 aa14.05□□□□□ -0.16
FAM3A-221ENST00000612856 VSIG10Q8N0Z9 540 aa14.04□□□□□ -0.16
FAM3A-221ENST00000612856 SLC4A3P48751 1232 aa14.04□□□□□ -0.16
FAM3A-221ENST00000612856 DENND4BO75064 1496 aaPredicted RBP14.04□□□□□ -0.16
FAM3A-221ENST00000612856 UBE2Q2Q8WVN8 375 aa14.03□□□□□ -0.16
FAM3A-221ENST00000612856 RPRD2Q5VT52 1461 aaKnown RBP14.02□□□□□ -0.16
FAM3A-221ENST00000612856 PKNOX2Q96KN3 472 aa14.02□□□□□ -0.16
FAM3A-221ENST00000612856 TERF2IPQ9NYB0 399 aa14.02□□□□□ -0.16
FAM3A-221ENST00000612856 PRAM1Q96QH2 718 aa14.02□□□□□ -0.17
FAM3A-221ENST00000612856 PLEKHH2Q8IVE3 1493 aa14.02□□□□□ -0.17
FAM3A-221ENST00000612856 ESCO1Q5FWF5 840 aa14.01□□□□□ -0.17
FAM3A-221ENST00000612856 PZPP20742 1482 aa14.01□□□□□ -0.17
FAM3A-221ENST00000612856 DNMT1P26358 1616 aaKnown RBP14.01□□□□□ -0.17
FAM3A-221ENST00000612856 TCERG1O14776 1098 aaKnown RBP14.01□□□□□ -0.17
Retrieved 100 of 20,778 RNA–protein pairs in 15.6 ms