RNA–Protein interactions for RNA: ENST00000600689.1

UPF1-210, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 2

Gene UPF1, Length 3,084 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-210ENST00000600689 NUP155O75694 1391 aa24.52■■□□□ 1.52
UPF1-210ENST00000600689 PNISRQ8TF01 805 aaKnown RBP24.52■■□□□ 1.52
UPF1-210ENST00000600689 KIAA1107Q9UPP5 1409 aa24.51■■□□□ 1.51
UPF1-210ENST00000600689 ZBTB4Q9P1Z0 1013 aaPredicted RBP24.51■■□□□ 1.51
UPF1-210ENST00000600689 SHROOM2Q13796 1616 aa24.51■■□□□ 1.51
UPF1-210ENST00000600689 USP47Q96K76 1375 aa24.51■■□□□ 1.51
UPF1-210ENST00000600689 PLIN1O60240 522 aa24.5■■□□□ 1.51
UPF1-210ENST00000600689 CDC42BPBQ9Y5S2 1711 aa24.5■■□□□ 1.51
UPF1-210ENST00000600689 MBD5Q9P267 1494 aa24.5■■□□□ 1.51
UPF1-210ENST00000600689 DHX29Q7Z478 1369 aaKnown RBP24.49■■□□□ 1.51
UPF1-210ENST00000600689 SAMD9LQ8IVG5 1584 aa24.49■■□□□ 1.51
UPF1-210ENST00000600689 KIF15Q9NS87 1388 aa24.48■■□□□ 1.51
UPF1-210ENST00000600689 SHANK2Q9UPX8 1470 aa24.47■■□□□ 1.51
UPF1-210ENST00000600689 PDE4AP27815 886 aa24.47■■□□□ 1.51
UPF1-210ENST00000600689 TTC37Q6PGP7 1564 aa24.46■■□□□ 1.51
UPF1-210ENST00000600689 CARD11Q9BXL7 1154 aa24.46■■□□□ 1.51
UPF1-210ENST00000600689 SPATA31E1Q6ZUB1 1445 aa24.45■■□□□ 1.5
UPF1-210ENST00000600689 RRP1P56182 461 aaKnown RBP24.45■■□□□ 1.5
UPF1-210ENST00000600689 SLC4A3P48751 1232 aa24.44■■□□□ 1.5
UPF1-210ENST00000600689 PREX2Q70Z35 1606 aa24.44■■□□□ 1.5
UPF1-210ENST00000600689 RCAN3Q9UKA8 241 aa24.43■■□□□ 1.5
UPF1-210ENST00000600689 CDCA7LQ96GN5 454 aa24.43■■□□□ 1.5
UPF1-210ENST00000600689 RNF123Q5XPI4 1314 aa24.43■■□□□ 1.5
UPF1-210ENST00000600689 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP24.42■■□□□ 1.5
UPF1-210ENST00000600689 ST20-MTHFSA0A0A6YYL1 179 aa24.41■■□□□ 1.5
UPF1-210ENST00000600689 ARHGAP5Q13017 1502 aa24.41■■□□□ 1.5
UPF1-210ENST00000600689 SYCP2Q9BX26 1530 aa24.41■■□□□ 1.5
UPF1-210ENST00000600689 ARHGEF5Q12774 1597 aa24.4■■□□□ 1.5
UPF1-210ENST00000600689 CCDC141Q6ZP82 1450 aa24.4■■□□□ 1.5
UPF1-210ENST00000600689 ABCC2Q92887 1545 aa24.4■■□□□ 1.5
UPF1-210ENST00000600689 TCERG1O14776 1098 aaKnown RBP24.33■■□□□ 1.49
UPF1-210ENST00000600689 GRWD1Q9BQ67 446 aaKnown RBP eCLIP24.33■■□□□ 1.49
UPF1-210ENST00000600689 CC2D1BQ5T0F9 858 aaKnown RBP24.32■■□□□ 1.48
UPF1-210ENST00000600689 DCAF11Q8TEB1 546 aa24.32■■□□□ 1.48
UPF1-210ENST00000600689 BACH2Q9BYV9 841 aa24.31■■□□□ 1.48
UPF1-210ENST00000600689 CLASP1Q7Z460 1538 aa24.31■■□□□ 1.48
UPF1-210ENST00000600689 BRPF3Q9ULD4 1205 aa24.3■■□□□ 1.48
UPF1-210ENST00000600689 KDM5DQ9BY66 1539 aa24.29■■□□□ 1.48
UPF1-210ENST00000600689 RSPH4AQ5TD94 716 aa24.29■■□□□ 1.48
UPF1-210ENST00000600689 ZCCHC11Q5TAX3 1644 aaKnown RBP24.28■■□□□ 1.48
UPF1-210ENST00000600689 MYO5CQ9NQX4 1742 aa24.28■■□□□ 1.48
UPF1-210ENST00000600689 CRBNQ96SW2 442 aa24.28■■□□□ 1.48
UPF1-210ENST00000600689 ARHGEF12Q9NZN5 1544 aa24.28■■□□□ 1.48
UPF1-210ENST00000600689 FAM135AQ9P2D6 1515 aa24.27■■□□□ 1.48
UPF1-210ENST00000600689 BCORL1Q5H9F3 1711 aa24.27■■□□□ 1.48
UPF1-210ENST00000600689 RGL3Q3MIN7 710 aa24.27■■□□□ 1.48
UPF1-210ENST00000600689 MYBBP1AQ9BQG0 1328 aaKnown RBP24.27■■□□□ 1.48
UPF1-210ENST00000600689 DAXXQ9UER7 740 aaPredicted RBP24.24■■□□□ 1.47
UPF1-210ENST00000600689 PLEKHH2Q8IVE3 1493 aa24.23■■□□□ 1.47
UPF1-210ENST00000600689 C20orf194Q5TEA3 1177 aa24.22■■□□□ 1.47
UPF1-210ENST00000600689 PLCH2O75038 1416 aa24.2■■□□□ 1.46
UPF1-210ENST00000600689 KDM5CP41229 1560 aa24.19■■□□□ 1.46
UPF1-210ENST00000600689 PPM1GO15355 546 aaPredicted RBP24.19■■□□□ 1.46
UPF1-210ENST00000600689 POLR1AO95602 1720 aaPredicted RBP24.18■■□□□ 1.46
UPF1-210ENST00000600689 UHRF1BP1Q6BDS2 1440 aa24.17■■□□□ 1.46
UPF1-210ENST00000600689 EIF5BO60841 1220 aaKnown RBP24.17■■□□□ 1.46
UPF1-210ENST00000600689 RALBP1Q15311 655 aa24.17■■□□□ 1.46
UPF1-210ENST00000600689 EFCAB2Q5VUJ9 269 aa24.17■■□□□ 1.46
UPF1-210ENST00000600689 MAST1Q9Y2H9 1570 aa24.17■■□□□ 1.46
UPF1-210ENST00000600689 TRAPPC8Q9Y2L5 1435 aa24.16■■□□□ 1.46
UPF1-210ENST00000600689 RGS3P49796 1198 aa24.16■■□□□ 1.46
UPF1-210ENST00000600689 NLRP13Q86W25 1043 aa24.15■■□□□ 1.46
UPF1-210ENST00000600689 UHRF1BP1LA0JNW5 1464 aa24.15■■□□□ 1.46
UPF1-210ENST00000600689 RALGAPBQ86X10 1494 aa24.15■■□□□ 1.46
UPF1-210ENST00000600689 BRD4O60885 1362 aaPredicted RBP24.15■■□□□ 1.46
UPF1-210ENST00000600689 CCDC144AA2RUR9 1427 aa24.14■■□□□ 1.45
UPF1-210ENST00000600689 AFAP1Q8N556 730 aa24.14■■□□□ 1.45
UPF1-210ENST00000600689 PLA2R1Q13018 1463 aa24.14■■□□□ 1.45
UPF1-210ENST00000600689 NFKBIBQ15653 356 aa24.14■■□□□ 1.45
UPF1-210ENST00000600689 LRPPRCP42704 1394 aaKnown RBP24.13■■□□□ 1.45
UPF1-210ENST00000600689 ROCK2O75116 1388 aaKnown RBP24.12■■□□□ 1.45
UPF1-210ENST00000600689 NBPF1Q3BBV0 1214 aa24.12■■□□□ 1.45
UPF1-210ENST00000600689 UNC13BO14795 1591 aa24.12■■□□□ 1.45
UPF1-210ENST00000600689 PLXNC1O60486 1568 aa24.11■■□□□ 1.45
UPF1-210ENST00000600689 KTN1Q86UP2 1357 aaKnown RBP24.1■■□□□ 1.45
UPF1-210ENST00000600689 MS4A1P11836 297 aa24.1■■□□□ 1.45
UPF1-210ENST00000600689 FRAT1Q92837 279 aaPredicted RBP24.1■■□□□ 1.45
UPF1-210ENST00000600689 GSE1Q14687 1217 aa24.09■■□□□ 1.45
UPF1-210ENST00000600689 USP35Q9P2H5 1018 aa24.09■■□□□ 1.45
UPF1-210ENST00000600689 ABCC1P33527 1531 aa24.09■■□□□ 1.45
UPF1-210ENST00000600689 DUOX2Q9NRD8 1548 aa24.08■■□□□ 1.44
UPF1-210ENST00000600689 DDRGK1Q96HY6 314 aa24.07■■□□□ 1.44
UPF1-210ENST00000600689 ARID4BQ4LE39 1312 aaPredicted RBP24.06■■□□□ 1.44
UPF1-210ENST00000600689 IQGAP3Q86VI3 1631 aa24.05■■□□□ 1.44
UPF1-210ENST00000600689 PANK3Q9H999 370 aa24.04■■□□□ 1.44
UPF1-210ENST00000600689 SPAG9O60271 1321 aaKnown RBP24.04■■□□□ 1.44
UPF1-210ENST00000600689 PDE3BQ13370 1112 aa24.03■■□□□ 1.44
UPF1-210ENST00000600689 PRAG1Q86YV5 1406 aa24.02■■□□□ 1.44
UPF1-210ENST00000600689 ERBINQ96RT1 1412 aa24.02■■□□□ 1.44
UPF1-210ENST00000600689 FRAT2O75474 233 aaPredicted RBP24.02■■□□□ 1.44
UPF1-210ENST00000600689 A2MP01023 1474 aa24.01■■□□□ 1.43
UPF1-210ENST00000600689 ARXQ96QS3 562 aa24.01■■□□□ 1.43
UPF1-210ENST00000600689 WDR7Q9Y4E6 1490 aa24■■□□□ 1.43
UPF1-210ENST00000600689 WASHC2CQ9Y4E1 1318 aa24■■□□□ 1.43
UPF1-210ENST00000600689 ADAMTS8Q9UP79 889 aa24■■□□□ 1.43
UPF1-210ENST00000600689 MAGI2Q86UL8 1455 aa23.98■■□□□ 1.43
UPF1-210ENST00000600689 TRPM1Q7Z4N2 1603 aa23.97■■□□□ 1.43
UPF1-210ENST00000600689 PER1O15534 1290 aaPredicted RBP23.95■■□□□ 1.42
UPF1-210ENST00000600689 FANCAO15360 1455 aa23.95■■□□□ 1.42
UPF1-210ENST00000600689 CCDC146Q8IYE0 955 aa23.95■■□□□ 1.42
Retrieved 100 of 20,778 RNA–protein pairs in 8.7 ms