RNA–Protein interactions for RNA: ENST00000596457.1

LIG1-211, Transcript of DNA ligase 1, humanhuman

TSL 5

Gene LIG1, Length 792 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-211ENST00000596457 CEBPAP49715 358 aaPredicted RBP16.92■□□□□ 0.3
LIG1-211ENST00000596457 CNTLNQ9NXG0 1405 aa16.92■□□□□ 0.3
LIG1-211ENST00000596457 ANKRD30AQ9BXX3 1397 aa16.9■□□□□ 0.3
LIG1-211ENST00000596457 KIF15Q9NS87 1388 aa16.9■□□□□ 0.3
LIG1-211ENST00000596457 CLTCQ00610 1675 aaKnown RBP16.9■□□□□ 0.3
LIG1-211ENST00000596457 PPP6R1Q9UPN7 881 aa16.89■□□□□ 0.29
LIG1-211ENST00000596457 DUOX2Q9NRD8 1548 aa16.89■□□□□ 0.29
LIG1-211ENST00000596457 PREX1Q8TCU6 1659 aa16.88■□□□□ 0.29
LIG1-211ENST00000596457 PTPRKQ15262 1439 aa16.87■□□□□ 0.29
LIG1-211ENST00000596457 C3P01024 1663 aa16.86■□□□□ 0.29
LIG1-211ENST00000596457 RRBP1Q9P2E9 1410 aaKnown RBP16.86■□□□□ 0.29
LIG1-211ENST00000596457 GRWD1Q9BQ67 446 aaKnown RBP eCLIP16.85■□□□□ 0.291e-6■□□□□ 11.3
LIG1-211ENST00000596457 NCOA1Q15788 1441 aa16.85■□□□□ 0.29
LIG1-211ENST00000596457 EIF2AK4Q9P2K8 1649 aaKnown RBP16.85■□□□□ 0.29
LIG1-211ENST00000596457 MROH2AA6NES4 1674 aa16.85■□□□□ 0.29
LIG1-211ENST00000596457 UHRF1BP1Q6BDS2 1440 aa16.84■□□□□ 0.29
LIG1-211ENST00000596457 ADGRL2O95490 1459 aa16.83■□□□□ 0.28
LIG1-211ENST00000596457 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP16.83■□□□□ 0.28
LIG1-211ENST00000596457 WASHC2CQ9Y4E1 1318 aa16.83■□□□□ 0.28
LIG1-211ENST00000596457 ERBINQ96RT1 1412 aa16.81■□□□□ 0.28
LIG1-211ENST00000596457 ZMYM3Q14202 1370 aa16.81■□□□□ 0.28
LIG1-211ENST00000596457 DMRT2Q9Y5R5 561 aa16.81■□□□□ 0.28
LIG1-211ENST00000596457 RNF17Q9BXT8 1623 aaKnown RBP16.81■□□□□ 0.28
LIG1-211ENST00000596457 NPATQ14207 1427 aa16.8■□□□□ 0.28
LIG1-211ENST00000596457 CEP152O94986 1710 aa16.8■□□□□ 0.28
LIG1-211ENST00000596457 KDM5DQ9BY66 1539 aa16.78■□□□□ 0.28
LIG1-211ENST00000596457 ANKRD50Q9ULJ7 1429 aa16.77■□□□□ 0.27
LIG1-211ENST00000596457 CFAP65Q6ZU64 1925 aaKnown RBP16.76■□□□□ 0.27
LIG1-211ENST00000596457 MROH1Q8NDA8 1641 aa16.76■□□□□ 0.27
LIG1-211ENST00000596457 ROCK1Q13464 1354 aa16.76■□□□□ 0.27
LIG1-211ENST00000596457 KANK1Q14678 1352 aa16.76■□□□□ 0.27
LIG1-211ENST00000596457 FAM135AQ9P2D6 1515 aa16.75■□□□□ 0.27
LIG1-211ENST00000596457 ZC3H13Q5T200 1668 aaKnown RBP16.74■□□□□ 0.27
LIG1-211ENST00000596457 ABCC3O15438 1527 aa16.74■□□□□ 0.27
LIG1-211ENST00000596457 FBXO31Q5XUX0 539 aaPredicted RBP16.73■□□□□ 0.27
LIG1-211ENST00000596457 DEPDC5O75140 1603 aa16.73■□□□□ 0.27
LIG1-211ENST00000596457 CAMSAP1Q5T5Y3 1602 aa16.72■□□□□ 0.27
LIG1-211ENST00000596457 PRDM15P57071 1507 aaPredicted RBP16.71■□□□□ 0.27
LIG1-211ENST00000596457 STRCQ7RTU9 1775 aa16.7■□□□□ 0.26
LIG1-211ENST00000596457 PZPP20742 1482 aa16.68■□□□□ 0.26
LIG1-211ENST00000596457 PTPRTO14522 1441 aa16.68■□□□□ 0.26
LIG1-211ENST00000596457 GCC2Q8IWJ2 1684 aa16.68■□□□□ 0.26
LIG1-211ENST00000596457 UNC13BO14795 1591 aa16.66■□□□□ 0.26
LIG1-211ENST00000596457 MYO3AQ8NEV4 1616 aa16.66■□□□□ 0.26
LIG1-211ENST00000596457 TNRQ92752 1358 aa16.65■□□□□ 0.26
LIG1-211ENST00000596457 NAIPQ13075 1403 aa16.65■□□□□ 0.26
LIG1-211ENST00000596457 ZNF142P52746 1687 aaPredicted RBP16.65■□□□□ 0.26
LIG1-211ENST00000596457 NUP155O75694 1391 aa16.64■□□□□ 0.26
LIG1-211ENST00000596457 VWDEQ8N2E2 1590 aa16.64■□□□□ 0.25
LIG1-211ENST00000596457 TRIM52Q96A61 297 aa16.64■□□□□ 0.25
LIG1-211ENST00000596457 PKD2Q13563 968 aa16.63■□□□□ 0.25
LIG1-211ENST00000596457 HFM1A2PYH4 1435 aa16.62■□□□□ 0.25
LIG1-211ENST00000596457 ERVK-7P63135 1459 aa16.61■□□□□ 0.25
LIG1-211ENST00000596457 PLA2R1Q13018 1463 aa16.61■□□□□ 0.25
LIG1-211ENST00000596457 LMTK2Q8IWU2 1503 aa16.61■□□□□ 0.25
LIG1-211ENST00000596457 CEP170BQ9Y4F5 1589 aaPredicted RBP16.61■□□□□ 0.25
LIG1-211ENST00000596457 TET3O43151 1660 aa16.61■□□□□ 0.25
LIG1-211ENST00000596457 IQGAP3Q86VI3 1631 aa16.6■□□□□ 0.25
LIG1-211ENST00000596457 ARHGAP31Q2M1Z3 1444 aa16.6■□□□□ 0.25
LIG1-211ENST00000596457 A2ML1A8K2U0 1454 aa16.6■□□□□ 0.25
LIG1-211ENST00000596457 EFCAB6Q5THR3 1501 aa16.6■□□□□ 0.25
LIG1-211ENST00000596457 MED1Q15648 1581 aaPredicted RBP16.6■□□□□ 0.25
LIG1-211ENST00000596457 E9PCH4 1651 aa16.57■□□□□ 0.24
LIG1-211ENST00000596457 LTBP4Q8N2S1 1624 aa16.57■□□□□ 0.24
LIG1-211ENST00000596457 IQSEC2Q5JU85 1478 aa16.57■□□□□ 0.24
LIG1-211ENST00000596457 NLRP1Q9C000 1473 aa16.55■□□□□ 0.24
LIG1-211ENST00000596457 THEMISQ8N1K5 641 aaPredicted RBP16.55■□□□□ 0.24
LIG1-211ENST00000596457 STAG3Q9UJ98 1225 aa16.55■□□□□ 0.24
LIG1-211ENST00000596457 NCKAP5LQ9HCH0 1330 aa16.54■□□□□ 0.24
LIG1-211ENST00000596457 UGGT1Q9NYU2 1555 aa16.54■□□□□ 0.24
LIG1-211ENST00000596457 SETD5Q9C0A6 1442 aa16.53■□□□□ 0.24
LIG1-211ENST00000596457 SYNMO15061 1565 aa16.52■□□□□ 0.24
LIG1-211ENST00000596457 UBAP1LF5GYI3 381 aa16.52■□□□□ 0.24
LIG1-211ENST00000596457 PIK3C2BO00750 1634 aa16.52■□□□□ 0.23
LIG1-211ENST00000596457 RPRD2Q5VT52 1461 aaKnown RBP16.51■□□□□ 0.23
LIG1-211ENST00000596457 IDI1Q13907 227 aa16.51■□□□□ 0.23
LIG1-211ENST00000596457 SLC4A1APQ9BWU0 796 aaKnown RBP16.51■□□□□ 0.23
LIG1-211ENST00000596457 UBR1Q8IWV7 1749 aa16.5■□□□□ 0.23
LIG1-211ENST00000596457 CHGAP10645 457 aaKnown RBP16.5■□□□□ 0.23
LIG1-211ENST00000596457 ANKLE2Q86XL3 938 aa16.5■□□□□ 0.23
LIG1-211ENST00000596457 NOS1P29475 1434 aa16.5■□□□□ 0.23
LIG1-211ENST00000596457 POLR1AO95602 1720 aaPredicted RBP16.48■□□□□ 0.23
LIG1-211ENST00000596457 PHF23Q9BUL5 403 aaPredicted RBP16.48■□□□□ 0.23
LIG1-211ENST00000596457 RAB3GAP2Q9H2M9 1393 aa16.48■□□□□ 0.23
LIG1-211ENST00000596457 SPHKAPQ2M3C7 1700 aa16.48■□□□□ 0.23
LIG1-211ENST00000596457 SLC52A1Q9NWF4 448 aa16.47■□□□□ 0.23
LIG1-211ENST00000596457 MYO5BQ9ULV0 1848 aa16.47■□□□□ 0.23
LIG1-211ENST00000596457 FOXD1Q16676 465 aa16.46■□□□□ 0.23
LIG1-211ENST00000596457 MPHOSPH9Q99550 1183 aa16.44■□□□□ 0.22
LIG1-211ENST00000596457 MED14O60244 1454 aa16.42■□□□□ 0.22
LIG1-211ENST00000596457 ADGRB3O60242 1522 aa16.42■□□□□ 0.22
LIG1-211ENST00000596457 TXNDC2Q86VQ3 553 aa16.42■□□□□ 0.22
LIG1-211ENST00000596457 SENP3Q9H4L4 574 aaPredicted RBP16.42■□□□□ 0.22
LIG1-211ENST00000596457 EID1Q9Y6B2 187 aa16.42■□□□□ 0.22
LIG1-211ENST00000596457 ZNF335Q9H4Z2 1342 aaPredicted RBP16.42■□□□□ 0.22
LIG1-211ENST00000596457 KDM5AP29375 1690 aaKnown RBP16.4■□□□□ 0.22
LIG1-211ENST00000596457 NEURL4Q96JN8 1562 aa16.4■□□□□ 0.22
LIG1-211ENST00000596457 HSPA1LP34931 641 aa16.4■□□□□ 0.22
LIG1-211ENST00000596457 ACIN1Q9UKV3 1341 aaKnown RBP16.4■□□□□ 0.22
LIG1-211ENST00000596457 NPHP4O75161 1426 aaPredicted RBP16.39■□□□□ 0.21
Retrieved 100 of 20,778 RNA–protein pairs in 19.3 ms