RNA–Protein interactions for RNA: ENST00000594104.1

VRK3-208, Transcript of vaccinia related kinase 3, humanhuman

Gene VRK3, Length 2,197 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-208ENST00000594104 ABCC2Q92887 1545 aa16.17■□□□□ 0.18
VRK3-208ENST00000594104 ARHGEF12Q9NZN5 1544 aa16.17■□□□□ 0.18
VRK3-208ENST00000594104 MAST1Q9Y2H9 1570 aa16.17■□□□□ 0.18
VRK3-208ENST00000594104 FBXO3Q9UK99 471 aa16.17■□□□□ 0.18
VRK3-208ENST00000594104 CFAP44Q96MT7 982 aa16.16■□□□□ 0.18
VRK3-208ENST00000594104 UHRF1BP1LA0JNW5 1464 aa16.16■□□□□ 0.18
VRK3-208ENST00000594104 HNRNPMP52272 730 aaKnown RBP eCLIP16.14■□□□□ 0.17
VRK3-208ENST00000594104 SAMD9LQ8IVG5 1584 aa16.14■□□□□ 0.17
VRK3-208ENST00000594104 MAPK8IP2Q13387 824 aaPredicted RBP16.13■□□□□ 0.17
VRK3-208ENST00000594104 CDC42BPBQ9Y5S2 1711 aa16.12■□□□□ 0.17
VRK3-208ENST00000594104 POLR1AO95602 1720 aaPredicted RBP16.11■□□□□ 0.17
VRK3-208ENST00000594104 C14orf37Q86TY3 774 aa16.1■□□□□ 0.17
VRK3-208ENST00000594104 BBXQ8WY36 941 aaPredicted RBP16.1■□□□□ 0.17
VRK3-208ENST00000594104 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP16.1■□□□□ 0.17
VRK3-208ENST00000594104 CLASP1Q7Z460 1538 aa16.1■□□□□ 0.17
VRK3-208ENST00000594104 RALGAPBQ86X10 1494 aa16.09■□□□□ 0.17
VRK3-208ENST00000594104 KIF7Q2M1P5 1343 aa16.08■□□□□ 0.17
VRK3-208ENST00000594104 ARHGAP5Q13017 1502 aa16.08■□□□□ 0.16
VRK3-208ENST00000594104 C11orf95C9JLR9 678 aaPredicted RBP16.08■□□□□ 0.16
VRK3-208ENST00000594104 PLXNC1O60486 1568 aa16.07■□□□□ 0.16
VRK3-208ENST00000594104 PRKRIP1Q9H875 184 aaPredicted RBP16.07■□□□□ 0.16
VRK3-208ENST00000594104 PLCH2O75038 1416 aa16.07■□□□□ 0.16
VRK3-208ENST00000594104 ROCK2O75116 1388 aaKnown RBP16.06■□□□□ 0.16
VRK3-208ENST00000594104 USP47Q96K76 1375 aa16.06■□□□□ 0.16
VRK3-208ENST00000594104 NEFLP07196 543 aa16.06■□□□□ 0.16
VRK3-208ENST00000594104 TTC37Q6PGP7 1564 aa16.05■□□□□ 0.16
VRK3-208ENST00000594104 FAM135AQ9P2D6 1515 aa16.05■□□□□ 0.16
VRK3-208ENST00000594104 UNC13BO14795 1591 aa16.05■□□□□ 0.16
VRK3-208ENST00000594104 EFCAB2Q5VUJ9 269 aa16.04■□□□□ 0.16
VRK3-208ENST00000594104 MYO5CQ9NQX4 1742 aa16.04■□□□□ 0.16
VRK3-208ENST00000594104 SYCP2Q9BX26 1530 aa16.04■□□□□ 0.16
VRK3-208ENST00000594104 ARAP3Q8WWN8 1544 aa16.04■□□□□ 0.16
VRK3-208ENST00000594104 DUOX2Q9NRD8 1548 aa16.04■□□□□ 0.16
VRK3-208ENST00000594104 VASPP50552 380 aaPredicted RBP16.03■□□□□ 0.16
VRK3-208ENST00000594104 IFNLR1Q8IU57 520 aaPredicted RBP16.03■□□□□ 0.16
VRK3-208ENST00000594104 TSHZ2Q9NRE2 1034 aa16.03■□□□□ 0.16
VRK3-208ENST00000594104 ERBINQ96RT1 1412 aa16.02■□□□□ 0.15
VRK3-208ENST00000594104 KDM5CP41229 1560 aa16.02■□□□□ 0.15
VRK3-208ENST00000594104 ERCC6L2Q5T890 1561 aa16.02■□□□□ 0.15
VRK3-208ENST00000594104 NPM1P06748 294 aaKnown RBP eCLIP16.02■□□□□ 0.15
VRK3-208ENST00000594104 NBR1Q14596 966 aa16.02■□□□□ 0.15
VRK3-208ENST00000594104 PODXL2Q9NZ53 605 aa16.01■□□□□ 0.15
VRK3-208ENST00000594104 ATP10AO60312 1499 aa16.01■□□□□ 0.15
VRK3-208ENST00000594104 ZCCHC11Q5TAX3 1644 aaKnown RBP15.99■□□□□ 0.15
VRK3-208ENST00000594104 MAGI2Q86UL8 1455 aa15.99■□□□□ 0.15
VRK3-208ENST00000594104 CCDC144AA2RUR9 1427 aa15.99■□□□□ 0.15
VRK3-208ENST00000594104 HNRNPUQ00839 825 aaKnown RBP eCLIP15.99■□□□□ 0.15
VRK3-208ENST00000594104 IQGAP3Q86VI3 1631 aa15.98■□□□□ 0.15
VRK3-208ENST00000594104 RTEL1-TNFRSF6BF6WH68 1400 aa15.98■□□□□ 0.15
VRK3-208ENST00000594104 CARD11Q9BXL7 1154 aa15.97■□□□□ 0.15
VRK3-208ENST00000594104 ERICH6BQ5W0A0 696 aa15.97■□□□□ 0.15
VRK3-208ENST00000594104 DHX29Q7Z478 1369 aaKnown RBP15.96■□□□□ 0.15
VRK3-208ENST00000594104 KTN1Q86UP2 1357 aaKnown RBP15.96■□□□□ 0.15
VRK3-208ENST00000594104 ABCC1P33527 1531 aa15.95■□□□□ 0.14
VRK3-208ENST00000594104 ZNF326Q5BKZ1 582 aaKnown RBP15.94■□□□□ 0.14
VRK3-208ENST00000594104 DCAF11Q8TEB1 546 aa15.94■□□□□ 0.14
VRK3-208ENST00000594104 MRS2Q9HD23 443 aa15.94■□□□□ 0.14
VRK3-208ENST00000594104 ATF5Q9Y2D1 282 aaPredicted RBP15.94■□□□□ 0.14
VRK3-208ENST00000594104 GPRASP1Q5JY77 1395 aa15.94■□□□□ 0.14
VRK3-208ENST00000594104 PLA2R1Q13018 1463 aa15.94■□□□□ 0.14
VRK3-208ENST00000594104 STAC3Q96MF2 364 aa15.93■□□□□ 0.14
VRK3-208ENST00000594104 PRAG1Q86YV5 1406 aa15.93■□□□□ 0.14
VRK3-208ENST00000594104 BCORL1Q5H9F3 1711 aa15.93■□□□□ 0.14
VRK3-208ENST00000594104 ZBED9Q6R2W3 1325 aa15.92■□□□□ 0.14
VRK3-208ENST00000594104 LAMC1P11047 1609 aa15.91■□□□□ 0.14
VRK3-208ENST00000594104 SPAG9O60271 1321 aaKnown RBP15.88■□□□□ 0.13
VRK3-208ENST00000594104 WDR7Q9Y4E6 1490 aa15.88■□□□□ 0.13
VRK3-208ENST00000594104 CCDC184Q52MB2 194 aa15.88■□□□□ 0.13
VRK3-208ENST00000594104 EIF2AK4Q9P2K8 1649 aaKnown RBP15.88■□□□□ 0.13
VRK3-208ENST00000594104 TRAPPC8Q9Y2L5 1435 aa15.88■□□□□ 0.13
VRK3-208ENST00000594104 ST20-MTHFSA0A0A6YYL1 179 aa15.87■□□□□ 0.13
VRK3-208ENST00000594104 RALBP1Q15311 655 aa15.87■□□□□ 0.13
VRK3-208ENST00000594104 GRWD1Q9BQ67 446 aaKnown RBP eCLIP15.87■□□□□ 0.13
VRK3-208ENST00000594104 TRPM1Q7Z4N2 1603 aa15.87■□□□□ 0.13
VRK3-208ENST00000594104 A2MP01023 1474 aa15.86■□□□□ 0.13
VRK3-208ENST00000594104 SPRYD3Q8NCJ5 442 aa15.85■□□□□ 0.13
VRK3-208ENST00000594104 WASHC2CQ9Y4E1 1318 aa15.85■□□□□ 0.13
VRK3-208ENST00000594104 FAM9BQ8IZU0 186 aa15.84■□□□□ 0.13
VRK3-208ENST00000594104 ABCA9Q8IUA7 1624 aa15.83■□□□□ 0.12
VRK3-208ENST00000594104 ZFYVE16Q7Z3T8 1539 aa15.83■□□□□ 0.12
VRK3-208ENST00000594104 PTPRTO14522 1441 aa15.82■□□□□ 0.12
VRK3-208ENST00000594104 BRD4O60885 1362 aaPredicted RBP15.82■□□□□ 0.12
VRK3-208ENST00000594104 PRDM15P57071 1507 aaPredicted RBP15.82■□□□□ 0.12
VRK3-208ENST00000594104 KANK1Q14678 1352 aa15.81■□□□□ 0.12
VRK3-208ENST00000594104 FANCAO15360 1455 aa15.8■□□□□ 0.12
VRK3-208ENST00000594104 NEURL4Q96JN8 1562 aa15.8■□□□□ 0.12
VRK3-208ENST00000594104 DEPDC5O75140 1603 aa15.79■□□□□ 0.12
VRK3-208ENST00000594104 MYT1Q01538 1121 aa15.79■□□□□ 0.12
VRK3-208ENST00000594104 RGL3Q3MIN7 710 aa15.79■□□□□ 0.12
VRK3-208ENST00000594104 POLR3GLQ9BT43 218 aa15.79■□□□□ 0.12
VRK3-208ENST00000594104 MYBBP1AQ9BQG0 1328 aaKnown RBP15.79■□□□□ 0.12
VRK3-208ENST00000594104 PNISRQ8TF01 805 aaKnown RBP15.79■□□□□ 0.12
VRK3-208ENST00000594104 TRPM2O94759 1503 aa15.79■□□□□ 0.12
VRK3-208ENST00000594104 E9PCH4 1651 aa15.78■□□□□ 0.12
VRK3-208ENST00000594104 TMC1Q8TDI8 760 aa15.78■□□□□ 0.12
VRK3-208ENST00000594104 INO80Q9ULG1 1556 aaPredicted RBP15.78■□□□□ 0.12
VRK3-208ENST00000594104 SMG6Q86US8 1419 aaKnown RBP15.78■□□□□ 0.12
VRK3-208ENST00000594104 AFAP1Q8N556 730 aa15.77■□□□□ 0.12
VRK3-208ENST00000594104 VWDEQ8N2E2 1590 aa15.77■□□□□ 0.12
VRK3-208ENST00000594104 ATP7AQ04656 1500 aa15.77■□□□□ 0.12
Retrieved 100 of 20,778 RNA–protein pairs in 14.4 ms