RNA–Protein interactions for RNA: ENST00000590574.5

SMARCA4-215, Transcript of SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 4, humanhuman

APPRIS ALT1 TSL 5 BASIC

Gene SMARCA4, Length 5,282 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCA4-215ENST00000590574 U2AF1L5P0DN76 240 aaPredicted RBP21.93■■□□□ 1.1
SMARCA4-215ENST00000590574 U2AF1Q01081 240 aaKnown RBP eCLIP21.93■■□□□ 1.1
SMARCA4-215ENST00000590574 SPRYD3Q8NCJ5 442 aa21.92■■□□□ 1.1
SMARCA4-215ENST00000590574 CENPQQ7L2Z9 268 aaPredicted RBP21.91■■□□□ 1.1
SMARCA4-215ENST00000590574 STK26Q9P289 416 aa21.9■■□□□ 1.1
SMARCA4-215ENST00000590574 CENPJQ9HC77 1338 aaPredicted RBP21.9■■□□□ 1.1
SMARCA4-215ENST00000590574 ROCK1Q13464 1354 aa21.89■■□□□ 1.1
SMARCA4-215ENST00000590574 PNNQ9H307 717 aaKnown RBP21.89■■□□□ 1.09
SMARCA4-215ENST00000590574 TROQ12816 1431 aaPredicted RBP21.89■■□□□ 1.09
SMARCA4-215ENST00000590574 PTPRKQ15262 1439 aa21.89■■□□□ 1.09
SMARCA4-215ENST00000590574 ANKRD30BQ9BXX2 1392 aa21.88■■□□□ 1.09
SMARCA4-215ENST00000590574 GOLGA6L22H0YM25 854 aa21.88■■□□□ 1.09
SMARCA4-215ENST00000590574 PNISRQ8TF01 805 aaKnown RBP21.88■■□□□ 1.09
SMARCA4-215ENST00000590574 MRC2Q9UBG0 1479 aa21.87■■□□□ 1.09
SMARCA4-215ENST00000590574 SMG6Q86US8 1419 aaKnown RBP21.87■■□□□ 1.09
SMARCA4-215ENST00000590574 TRIM44Q96DX7 344 aaPredicted RBP21.87■■□□□ 1.09
SMARCA4-215ENST00000590574 RWDD1Q9H446 243 aaPredicted RBP21.87■■□□□ 1.09
SMARCA4-215ENST00000590574 IQGAP2Q13576 1575 aa21.87■■□□□ 1.09
SMARCA4-215ENST00000590574 SLC4A3P48751 1232 aa21.86■■□□□ 1.09
SMARCA4-215ENST00000590574 SLKQ9H2G2 1235 aaPredicted RBP21.86■■□□□ 1.09
SMARCA4-215ENST00000590574 C9orf84Q5VXU9 1444 aa21.86■■□□□ 1.09
SMARCA4-215ENST00000590574 CDCA7LQ96GN5 454 aa21.86■■□□□ 1.09
SMARCA4-215ENST00000590574 PMFBP1Q8TBY8 1022 aa21.85■■□□□ 1.09
SMARCA4-215ENST00000590574 RRP7AQ9Y3A4 280 aaKnown RBP21.85■■□□□ 1.09
SMARCA4-215ENST00000590574 CLUAP1Q96AJ1 413 aa21.85■■□□□ 1.09
SMARCA4-215ENST00000590574 HSP90AB1P08238 724 aaKnown RBP21.84■■□□□ 1.09
SMARCA4-215ENST00000590574 FAM161AQ3B820 660 aa21.84■■□□□ 1.09
SMARCA4-215ENST00000590574 HSCBQ8IWL3 235 aa21.84■■□□□ 1.09
SMARCA4-215ENST00000590574 APAF1O14727 1248 aa21.84■■□□□ 1.09
SMARCA4-215ENST00000590574 NBPF1Q3BBV0 1214 aa21.83■■□□□ 1.09
SMARCA4-215ENST00000590574 TRAK1Q9UPV9 953 aa21.83■■□□□ 1.09
SMARCA4-215ENST00000590574 ABCC5O15440 1437 aa21.83■■□□□ 1.08
SMARCA4-215ENST00000590574 NCLP19338 710 aaKnown RBP21.83■■□□□ 1.08
SMARCA4-215ENST00000590574 ITPRIPQ8IWB1 547 aa21.83■■□□□ 1.08
SMARCA4-215ENST00000590574 CHMP4BQ9H444 224 aaKnown RBP21.83■■□□□ 1.08
SMARCA4-215ENST00000590574 IFT140Q96RY7 1462 aa21.82■■□□□ 1.08
SMARCA4-215ENST00000590574 NUTM2DQ5VT03 806 aaPredicted RBP21.82■■□□□ 1.08
SMARCA4-215ENST00000590574 SNAPC4Q5SXM2 1469 aa21.81■■□□□ 1.08
SMARCA4-215ENST00000590574 E9PSI1 815 aa21.81■■□□□ 1.08
SMARCA4-215ENST00000590574 USP35Q9P2H5 1018 aa21.81■■□□□ 1.08
SMARCA4-215ENST00000590574 URB2Q14146 1524 aaKnown RBP21.81■■□□□ 1.08
SMARCA4-215ENST00000590574 NCOA1Q15788 1441 aa21.81■■□□□ 1.08
SMARCA4-215ENST00000590574 CASC1Q6TDU7 716 aa21.8■■□□□ 1.08
SMARCA4-215ENST00000590574 LAMC3Q9Y6N6 1575 aa21.8■■□□□ 1.08
SMARCA4-215ENST00000590574 ADAMTS8Q9UP79 889 aa21.79■■□□□ 1.08
SMARCA4-215ENST00000590574 CFAP43Q8NDM7 1665 aa21.78■■□□□ 1.08
SMARCA4-215ENST00000590574 MSH5O43196 834 aa21.78■■□□□ 1.08
SMARCA4-215ENST00000590574 SMC4Q9NTJ3 1288 aa21.78■■□□□ 1.08
SMARCA4-215ENST00000590574 IPO8O15397 1037 aaKnown RBP21.77■■□□□ 1.07
SMARCA4-215ENST00000590574 HDGFL2Q7Z4V5 671 aaPredicted RBP21.77■■□□□ 1.07
SMARCA4-215ENST00000590574 KIAA0586Q9BVV6 1533 aa21.76■■□□□ 1.07
SMARCA4-215ENST00000590574 GLIPR1L2Q4G1C9 344 aa21.75■■□□□ 1.07
SMARCA4-215ENST00000590574 BCL2L13Q9BXK5 485 aa21.75■■□□□ 1.07
SMARCA4-215ENST00000590574 L1TD1Q5T7N2 865 aaKnown RBP21.75■■□□□ 1.07
SMARCA4-215ENST00000590574 CAMSAP2Q08AD1 1489 aa21.75■■□□□ 1.07
SMARCA4-215ENST00000590574 COG6Q9Y2V7 657 aa21.75■■□□□ 1.07
SMARCA4-215ENST00000590574 ARHGAP5Q13017 1502 aa21.74■■□□□ 1.07
SMARCA4-215ENST00000590574 RPRD2Q5VT52 1461 aaKnown RBP21.74■■□□□ 1.07
SMARCA4-215ENST00000590574 PAK3O75914 559 aaPredicted RBP21.74■■□□□ 1.07
SMARCA4-215ENST00000590574 SYNJ2O15056 1496 aa21.74■■□□□ 1.07
SMARCA4-215ENST00000590574 MFAP1P55081 439 aaKnown RBP21.73■■□□□ 1.07
SMARCA4-215ENST00000590574 C14orf37Q86TY3 774 aa21.72■■□□□ 1.07
SMARCA4-215ENST00000590574 WASHC2CQ9Y4E1 1318 aa21.72■■□□□ 1.07
SMARCA4-215ENST00000590574 ZBTB7CA1YPR0 619 aa21.71■■□□□ 1.07
SMARCA4-215ENST00000590574 UGGT2Q9NYU1 1516 aa21.71■■□□□ 1.07
SMARCA4-215ENST00000590574 CGNL1Q0VF96 1302 aa21.7■■□□□ 1.06
SMARCA4-215ENST00000590574 PPP2R1AP30153 589 aa21.69■■□□□ 1.06
SMARCA4-215ENST00000590574 DNAJC5BQ9UF47 199 aa21.69■■□□□ 1.06
SMARCA4-215ENST00000590574 NAP1L5Q96NT1 182 aaPredicted RBP21.69■■□□□ 1.06
SMARCA4-215ENST00000590574 GZF1Q9H116 711 aaPredicted RBP21.69■■□□□ 1.06
SMARCA4-215ENST00000590574 CTTNBP2Q8WZ74 1663 aa21.68■■□□□ 1.06
SMARCA4-215ENST00000590574 THOC2Q8NI27 1593 aaKnown RBP21.68■■□□□ 1.06
SMARCA4-215ENST00000590574 PLEKHG5O94827 1062 aa21.67■■□□□ 1.06
SMARCA4-215ENST00000590574 GSE1Q14687 1217 aa21.66■■□□□ 1.06
SMARCA4-215ENST00000590574 TERF2IPQ9NYB0 399 aa21.66■■□□□ 1.06
SMARCA4-215ENST00000590574 MLECQ14165 292 aa21.65■■□□□ 1.06
SMARCA4-215ENST00000590574 PLB1Q6P1J6 1458 aa21.65■■□□□ 1.06
SMARCA4-215ENST00000590574 SOX12O15370 315 aa21.64■■□□□ 1.05
SMARCA4-215ENST00000590574 ERBINQ96RT1 1412 aa21.63■■□□□ 1.05
SMARCA4-215ENST00000590574 STAC3Q96MF2 364 aa21.62■■□□□ 1.05
SMARCA4-215ENST00000590574 ARHGEF11O15085 1522 aa21.62■■□□□ 1.05
SMARCA4-215ENST00000590574 CALD1Q05682 793 aaKnown RBP21.61■■□□□ 1.05
SMARCA4-215ENST00000590574 NGEFQ8N5V2 710 aa21.61■■□□□ 1.05
SMARCA4-215ENST00000590574 ZKSCAN2Q63HK3 967 aa21.6■■□□□ 1.05
SMARCA4-215ENST00000590574 APBB1O00213 710 aa21.6■■□□□ 1.05
SMARCA4-215ENST00000590574 EVC2Q86UK5 1308 aa21.6■■□□□ 1.05
SMARCA4-215ENST00000590574 TPRNQ4KMQ1 711 aa21.6■■□□□ 1.05
SMARCA4-215ENST00000590574 AFAP1Q8N556 730 aa21.6■■□□□ 1.05
SMARCA4-215ENST00000590574 BACH2Q9BYV9 841 aa21.59■■□□□ 1.05
SMARCA4-215ENST00000590574 PANK1Q8TE04 598 aa21.59■■□□□ 1.05
SMARCA4-215ENST00000590574 RUNDC1Q96C34 613 aa21.59■■□□□ 1.05
SMARCA4-215ENST00000590574 CFAP70Q5T0N1 1121 aa21.57■■□□□ 1.04
SMARCA4-215ENST00000590574 SUGP2Q8IX01 1082 aaKnown RBP eCLIP21.57■■□□□ 1.043e-7■■■■□ 26.2
SMARCA4-215ENST00000590574 MAGI1Q96QZ7 1491 aaPredicted RBP21.57■■□□□ 1.04
SMARCA4-215ENST00000590574 ZBTB4Q9P1Z0 1013 aaPredicted RBP21.57■■□□□ 1.04
SMARCA4-215ENST00000590574 GRIN2AQ12879 1464 aa21.56■■□□□ 1.04
SMARCA4-215ENST00000590574 GBP4Q96PP9 640 aa21.56■■□□□ 1.04
SMARCA4-215ENST00000590574 TCOF1Q13428 1488 aaKnown RBP21.55■■□□□ 1.04
SMARCA4-215ENST00000590574 GOLGA6L3A6NEY3 463 aa21.55■■□□□ 1.04
SMARCA4-215ENST00000590574 VGFO15240 615 aaPredicted RBP21.55■■□□□ 1.04
Retrieved 100 of 20,778 RNA–protein pairs in 67.7 ms