RNA–Protein interactions for RNA: ENST00000589117.5

ZNF540-206, Transcript of zinc finger protein 540, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene ZNF540, Length 2,349 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ZNF540-206ENST00000589117 ANKRD30AQ9BXX3 1397 aa10.29□□□□□ -0.76
ZNF540-206ENST00000589117 PLB1Q6P1J6 1458 aa10.29□□□□□ -0.76
ZNF540-206ENST00000589117 ZNF644Q9H582 1327 aaPredicted RBP10.28□□□□□ -0.76
ZNF540-206ENST00000589117 L3MBTL2Q969R5 705 aa10.28□□□□□ -0.76
ZNF540-206ENST00000589117 ZNF777Q9ULD5 760 aaPredicted RBP10.28□□□□□ -0.76
ZNF540-206ENST00000589117 ANKRD30BQ9BXX2 1392 aa10.28□□□□□ -0.76
ZNF540-206ENST00000589117 SUPT16HQ9Y5B9 1047 aaKnown RBP10.28□□□□□ -0.76
ZNF540-206ENST00000589117 KCNH8Q96L42 1107 aa10.27□□□□□ -0.77
ZNF540-206ENST00000589117 GPATCH8Q9UKJ3 1502 aaKnown RBP10.27□□□□□ -0.77
ZNF540-206ENST00000589117 CAMSAP2Q08AD1 1489 aa10.27□□□□□ -0.77
ZNF540-206ENST00000589117 RPRD2Q5VT52 1461 aaKnown RBP10.27□□□□□ -0.77
ZNF540-206ENST00000589117 TSPY4P0CV99 314 aa10.27□□□□□ -0.77
ZNF540-206ENST00000589117 TSPY10P0CW01 314 aa10.27□□□□□ -0.77
ZNF540-206ENST00000589117 HSPA5P11021 654 aaKnown RBP10.27□□□□□ -0.77
ZNF540-206ENST00000589117 GSE1Q14687 1217 aa10.27□□□□□ -0.77
ZNF540-206ENST00000589117 DCAF8Q5TAQ9 597 aa10.27□□□□□ -0.77
ZNF540-206ENST00000589117 ARXQ96QS3 562 aa10.27□□□□□ -0.77
ZNF540-206ENST00000589117 NCOA1Q15788 1441 aa10.26□□□□□ -0.77
ZNF540-206ENST00000589117 NEFLP07196 543 aa10.26□□□□□ -0.77
ZNF540-206ENST00000589117 ADCY10Q96PN6 1610 aa10.26□□□□□ -0.77
ZNF540-206ENST00000589117 KDM6BO15054 1643 aa10.25□□□□□ -0.77
ZNF540-206ENST00000589117 DENND4BO75064 1496 aaPredicted RBP10.25□□□□□ -0.77
ZNF540-206ENST00000589117 KDM5BQ9UGL1 1544 aa10.25□□□□□ -0.77
ZNF540-206ENST00000589117 ADGRL2O95490 1459 aa10.24□□□□□ -0.77
ZNF540-206ENST00000589117 RSPH4AQ5TD94 716 aa10.24□□□□□ -0.77
ZNF540-206ENST00000589117 BCL11BQ9C0K0 894 aaPredicted RBP10.24□□□□□ -0.77
ZNF540-206ENST00000589117 KIF14Q15058 1648 aa10.23□□□□□ -0.77
ZNF540-206ENST00000589117 PTPRGP23470 1445 aa10.23□□□□□ -0.77
ZNF540-206ENST00000589117 ADGBQ8N7X0 1667 aa10.22□□□□□ -0.77
ZNF540-206ENST00000589117 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP10.22□□□□□ -0.77
ZNF540-206ENST00000589117 ZFP91Q96JP5 570 aaPredicted RBP10.22□□□□□ -0.77
ZNF540-206ENST00000589117 ABCA8O94911 1581 aa10.22□□□□□ -0.77
ZNF540-206ENST00000589117 CADPS2Q86UW7 1296 aa10.22□□□□□ -0.77
ZNF540-206ENST00000589117 KCNV2Q8TDN2 545 aa10.22□□□□□ -0.77
ZNF540-206ENST00000589117 STK24Q9Y6E0 443 aa10.22□□□□□ -0.77
ZNF540-206ENST00000589117 WASHC2AQ641Q2 1341 aa10.22□□□□□ -0.77
ZNF540-206ENST00000589117 ATP10BO94823 1461 aa10.22□□□□□ -0.77
ZNF540-206ENST00000589117 DAXXQ9UER7 740 aaPredicted RBP10.21□□□□□ -0.77
ZNF540-206ENST00000589117 ANKRD50Q9ULJ7 1429 aa10.21□□□□□ -0.77
ZNF540-206ENST00000589117 KIAA1107Q9UPP5 1409 aa10.21□□□□□ -0.77
ZNF540-206ENST00000589117 SHANK2Q9UPX8 1470 aa10.21□□□□□ -0.78
ZNF540-206ENST00000589117 C14orf37Q86TY3 774 aa10.21□□□□□ -0.78
ZNF540-206ENST00000589117 VGFO15240 615 aaPredicted RBP10.19□□□□□ -0.78
ZNF540-206ENST00000589117 PZPP20742 1482 aa10.18□□□□□ -0.78
ZNF540-206ENST00000589117 TEX14Q8IWB6 1497 aa10.18□□□□□ -0.78
ZNF540-206ENST00000589117 C9orf84Q5VXU9 1444 aa10.18□□□□□ -0.78
ZNF540-206ENST00000589117 CNTLNQ9NXG0 1405 aa10.18□□□□□ -0.78
ZNF540-206ENST00000589117 CCDC7Q96M83 1385 aa10.18□□□□□ -0.78
ZNF540-206ENST00000589117 RASEFQ8IZ41 740 aa10.18□□□□□ -0.78
ZNF540-206ENST00000589117 ABCC10Q5T3U5 1492 aa10.18□□□□□ -0.78
ZNF540-206ENST00000589117 CROCC2H7BZ55 1655 aa10.18□□□□□ -0.78
ZNF540-206ENST00000589117 NUP155O75694 1391 aa10.18□□□□□ -0.78
ZNF540-206ENST00000589117 MNX1P50219 401 aaPredicted RBP10.17□□□□□ -0.78
ZNF540-206ENST00000589117 LMOD2Q6P5Q4 547 aa10.17□□□□□ -0.78
ZNF540-206ENST00000589117 ARID4BQ4LE39 1312 aaPredicted RBP10.17□□□□□ -0.78
ZNF540-206ENST00000589117 NBPF8Q3BBV2 869 aa10.17□□□□□ -0.78
ZNF540-206ENST00000589117 DHX30Q7L2E3 1194 aaKnown RBP eCLIP10.16□□□□□ -0.78
ZNF540-206ENST00000589117 HNRNPUQ00839 825 aaKnown RBP eCLIP10.16□□□□□ -0.78
ZNF540-206ENST00000589117 BRPF1P55201 1214 aaPredicted RBP10.15□□□□□ -0.78
ZNF540-206ENST00000589117 MYT1Q01538 1121 aa10.15□□□□□ -0.78
ZNF540-206ENST00000589117 CDC42BPAQ5VT25 1732 aa10.15□□□□□ -0.78
ZNF540-206ENST00000589117 HNRNPMP52272 730 aaKnown RBP eCLIP10.15□□□□□ -0.79
ZNF540-206ENST00000589117 KIF15Q9NS87 1388 aa10.14□□□□□ -0.79
ZNF540-206ENST00000589117 ARHGEF5Q12774 1597 aa10.14□□□□□ -0.79
ZNF540-206ENST00000589117 SPATA31E1Q6ZUB1 1445 aa10.14□□□□□ -0.79
ZNF540-206ENST00000589117 PYGBP11216 843 aa10.14□□□□□ -0.79
ZNF540-206ENST00000589117 PRKRIP1Q9H875 184 aaPredicted RBP10.14□□□□□ -0.79
ZNF540-206ENST00000589117 CCDC141Q6ZP82 1450 aa10.13□□□□□ -0.79
ZNF540-206ENST00000589117 ZNF326Q5BKZ1 582 aaKnown RBP10.12□□□□□ -0.79
ZNF540-206ENST00000589117 FAM212AQ96EL1 285 aa10.12□□□□□ -0.79
ZNF540-206ENST00000589117 KIF7Q2M1P5 1343 aa10.12□□□□□ -0.79
ZNF540-206ENST00000589117 CREBZFQ9NS37 354 aa10.12□□□□□ -0.79
ZNF540-206ENST00000589117 PLEKHH2Q8IVE3 1493 aa10.12□□□□□ -0.79
ZNF540-206ENST00000589117 KDM5DQ9BY66 1539 aa10.11□□□□□ -0.79
ZNF540-206ENST00000589117 ROCK2O75116 1388 aaKnown RBP10.11□□□□□ -0.79
ZNF540-206ENST00000589117 USP47Q96K76 1375 aa10.11□□□□□ -0.79
ZNF540-206ENST00000589117 C11orf95C9JLR9 678 aaPredicted RBP10.11□□□□□ -0.79
ZNF540-206ENST00000589117 MRS2Q9HD23 443 aa10.11□□□□□ -0.79
ZNF540-206ENST00000589117 ARHGEF12Q9NZN5 1544 aa10.11□□□□□ -0.79
ZNF540-206ENST00000589117 UHRF1BP1Q6BDS2 1440 aa10.1□□□□□ -0.79
ZNF540-206ENST00000589117 MBD5Q9P267 1494 aa10.1□□□□□ -0.79
ZNF540-206ENST00000589117 CARD11Q9BXL7 1154 aa10.1□□□□□ -0.79
ZNF540-206ENST00000589117 ERICH6BQ5W0A0 696 aa10.09□□□□□ -0.79
ZNF540-206ENST00000589117 PREX2Q70Z35 1606 aa10.08□□□□□ -0.8
ZNF540-206ENST00000589117 POLR1AO95602 1720 aaPredicted RBP10.08□□□□□ -0.8
ZNF540-206ENST00000589117 ARHGAP5Q13017 1502 aa10.08□□□□□ -0.8
ZNF540-206ENST00000589117 CHRM1P11229 460 aaPredicted RBP10.07□□□□□ -0.8
ZNF540-206ENST00000589117 SHROOM2Q13796 1616 aa10.07□□□□□ -0.8
ZNF540-206ENST00000589117 RALGAPBQ86X10 1494 aa10.07□□□□□ -0.8
ZNF540-206ENST00000589117 HOMEZQ8IX15 550 aa10.07□□□□□ -0.8
ZNF540-206ENST00000589117 FAM9BQ8IZU0 186 aa10.07□□□□□ -0.8
ZNF540-206ENST00000589117 DCAF11Q8TEB1 546 aa10.07□□□□□ -0.8
ZNF540-206ENST00000589117 CHD1O14646 1710 aa10.06□□□□□ -0.8
ZNF540-206ENST00000589117 ABCC2Q92887 1545 aa10.06□□□□□ -0.8
ZNF540-206ENST00000589117 EFCAB2Q5VUJ9 269 aa10.06□□□□□ -0.8
ZNF540-206ENST00000589117 SGIP1Q9BQI5 828 aa10.06□□□□□ -0.8
ZNF540-206ENST00000589117 POLR3GLQ9BT43 218 aa10.06□□□□□ -0.8
ZNF540-206ENST00000589117 CCDC144AA2RUR9 1427 aa10.06□□□□□ -0.8
ZNF540-206ENST00000589117 SAMD9LQ8IVG5 1584 aa10.06□□□□□ -0.8
ZNF540-206ENST00000589117 ZBED9Q6R2W3 1325 aa10.05□□□□□ -0.8
Retrieved 100 of 20,778 RNA–protein pairs in 78.5 ms