RNA–Protein interactions for RNA: ENST00000586792.5

ZNF540-204, Transcript of zinc finger protein 540, humanhuman

TSL 3 BASIC

Gene ZNF540, Length 564 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ZNF540-204ENST00000586792 MFSD10Q14728 455 aa11.81□□□□□ -0.52
ZNF540-204ENST00000586792 PROX2Q3B8N5 592 aa11.81□□□□□ -0.52
ZNF540-204ENST00000586792 TYW1BQ6NUM6 668 aa11.81□□□□□ -0.52
ZNF540-204ENST00000586792 PHF14O94880 888 aa11.8□□□□□ -0.52
ZNF540-204ENST00000586792 Q6ZNB5 142 aa11.8□□□□□ -0.52
ZNF540-204ENST00000586792 COL9A1P20849 921 aa11.79□□□□□ -0.52
ZNF540-204ENST00000586792 BCAMP50895 628 aa11.79□□□□□ -0.52
ZNF540-204ENST00000586792 KCNC4Q03721 635 aa11.79□□□□□ -0.52
ZNF540-204ENST00000586792 ZFRQ96KR1 1074 aaKnown RBP11.78□□□□□ -0.52
ZNF540-204ENST00000586792 KIAA1468Q9P260 1216 aa11.77□□□□□ -0.53
ZNF540-204ENST00000586792 EMILIN3Q9NT22 766 aa11.76□□□□□ -0.53
ZNF540-204ENST00000586792 GTPBP6O43824 516 aaPredicted RBP11.75□□□□□ -0.53
ZNF540-204ENST00000586792 LAPTM4AQ15012 233 aa11.75□□□□□ -0.53
ZNF540-204ENST00000586792 EPAS1Q99814 870 aa11.73□□□□□ -0.53
ZNF540-204ENST00000586792 WBP1LQ9NX94 342 aa11.73□□□□□ -0.53
ZNF540-204ENST00000586792 FAM98CQ17RN3 349 aaKnown RBP11.7□□□□□ -0.54
ZNF540-204ENST00000586792 C6orf132Q5T0Z8 1188 aa11.7□□□□□ -0.54
ZNF540-204ENST00000586792 TSR3Q9UJK0 312 aaKnown RBP11.69□□□□□ -0.54
ZNF540-204ENST00000586792 TRIM6-TRIM34B2RNG4 842 aa11.68□□□□□ -0.54
ZNF540-204ENST00000586792 CDKN2AIPQ9NXV6 580 aaPredicted RBP11.68□□□□□ -0.54
ZNF540-204ENST00000586792 LRCH3Q96II8 777 aa11.67□□□□□ -0.54
ZNF540-204ENST00000586792 SEPT9Q9UHD8 586 aaPredicted RBP11.67□□□□□ -0.54
ZNF540-204ENST00000586792 HPS5Q9UPZ3 1129 aa11.65□□□□□ -0.54
ZNF540-204ENST00000586792 PACS2Q86VP3 889 aa11.61□□□□□ -0.55
ZNF540-204ENST00000586792 GFRA3O60609 400 aa11.6□□□□□ -0.55
ZNF540-204ENST00000586792 CAMK2BQ13554 666 aa11.6□□□□□ -0.55
ZNF540-204ENST00000586792 PPP4CP60510 307 aa11.59□□□□□ -0.55
ZNF540-204ENST00000586792 TRAF7Q6Q0C0 670 aa11.59□□□□□ -0.55
ZNF540-204ENST00000586792 RBM33Q96EV2 1170 aaKnown RBP11.58□□□□□ -0.56
ZNF540-204ENST00000586792 DPYSL4O14531 572 aa11.56□□□□□ -0.56
ZNF540-204ENST00000586792 CADPS2Q86UW7 1296 aa11.54□□□□□ -0.56
ZNF540-204ENST00000586792 DDX12PQ92771 950 aa11.53□□□□□ -0.56
ZNF540-204ENST00000586792 NRG2O14511 850 aaPredicted RBP11.51□□□□□ -0.57
ZNF540-204ENST00000586792 EN1Q05925 392 aaPredicted RBP11.51□□□□□ -0.57
ZNF540-204ENST00000586792 TJAP1Q5JTD0 557 aa11.51□□□□□ -0.57
ZNF540-204ENST00000586792 PRKD2Q9BZL6 878 aa11.51□□□□□ -0.57
ZNF540-204ENST00000586792 TSKSQ9UJT2 592 aa11.51□□□□□ -0.57
ZNF540-204ENST00000586792 MAP3K7O43318 606 aa11.5□□□□□ -0.57
ZNF540-204ENST00000586792 DCAF8L2P0C7V8 631 aa11.49□□□□□ -0.57
ZNF540-204ENST00000586792 NBR1Q14596 966 aa11.49□□□□□ -0.57
ZNF540-204ENST00000586792 IL21Q9HBE4 155 aa11.49□□□□□ -0.57
ZNF540-204ENST00000586792 V9GY48 417 aaPredicted RBP11.49□□□□□ -0.57
ZNF540-204ENST00000586792 SAMD7Q7Z3H4 446 aa11.47□□□□□ -0.57
ZNF540-204ENST00000586792 CERKQ8TCT0 537 aa11.47□□□□□ -0.57
ZNF540-204ENST00000586792 LCE2BO14633 110 aa11.46□□□□□ -0.57
ZNF540-204ENST00000586792 HDGFP51858 240 aaKnown RBP11.46□□□□□ -0.57
ZNF540-204ENST00000586792 TSR1Q2NL82 804 aaKnown RBP11.45□□□□□ -0.58
ZNF540-204ENST00000586792 PPP1R18Q6NYC8 613 aa11.45□□□□□ -0.58
ZNF540-204ENST00000586792 CDCA7LQ96GN5 454 aa11.45□□□□□ -0.58
ZNF540-204ENST00000586792 MTRQ99707 1265 aa11.45□□□□□ -0.58
ZNF540-204ENST00000586792 SPDYE16A6NNV3 312 aaPredicted RBP11.44□□□□□ -0.58
ZNF540-204ENST00000586792 PRSS12P56730 875 aa11.44□□□□□ -0.58
ZNF540-204ENST00000586792 NBPF26B4DH59 902 aa11.42□□□□□ -0.58
ZNF540-204ENST00000586792 PDIA6Q15084 440 aa11.42□□□□□ -0.58
ZNF540-204ENST00000586792 EIF4ENIF1Q9NRA8 985 aaKnown RBP11.42□□□□□ -0.58
ZNF540-204ENST00000586792 NECTIN2Q92692 538 aa11.41□□□□□ -0.58
ZNF540-204ENST00000586792 SMAPO00193 183 aa11.4□□□□□ -0.58
ZNF540-204ENST00000586792 TATDN2Q93075 761 aa11.4□□□□□ -0.58
ZNF540-204ENST00000586792 GGCXP38435 758 aa11.39□□□□□ -0.59
ZNF540-204ENST00000586792 PNMA3Q9UL41 463 aa11.39□□□□□ -0.59
ZNF540-204ENST00000586792 ZNF787Q6DD87 383 aa11.37□□□□□ -0.59
ZNF540-204ENST00000586792 PDZRN3Q9UPQ7 1066 aa11.36□□□□□ -0.59
ZNF540-204ENST00000586792 RNF40O75150 1001 aa11.35□□□□□ -0.59
ZNF540-204ENST00000586792 ZNF516Q92618 1163 aa11.35□□□□□ -0.59
ZNF540-204ENST00000586792 FAM198AQ9UFP1 575 aa11.34□□□□□ -0.59
ZNF540-204ENST00000586792 RBM27Q9P2N5 1060 aaKnown RBP11.33□□□□□ -0.6
ZNF540-204ENST00000586792 APLP1P51693 650 aa11.32□□□□□ -0.6
ZNF540-204ENST00000586792 TMUB1Q9BVT8 246 aa11.32□□□□□ -0.6
ZNF540-204ENST00000586792 NUDT18Q6ZVK8 323 aa11.31□□□□□ -0.6
ZNF540-204ENST00000586792 SLC4A3P48751 1232 aa11.3□□□□□ -0.6
ZNF540-204ENST00000586792 GRXCR2A6NFK2 248 aa11.29□□□□□ -0.6
ZNF540-204ENST00000586792 C3orf80F5H4A9 247 aa11.28□□□□□ -0.6
ZNF540-204ENST00000586792 SLF2Q8IX21 1173 aa11.28□□□□□ -0.6
ZNF540-204ENST00000586792 NKX2-3Q8TAU0 364 aa11.27□□□□□ -0.61
ZNF540-204ENST00000586792 ARIH1Q9Y4X5 557 aaPredicted RBP11.27□□□□□ -0.61
ZNF540-204ENST00000586792 E2F4Q16254 413 aa11.26□□□□□ -0.61
ZNF540-204ENST00000586792 PRR14Q9BWN1 585 aa11.25□□□□□ -0.61
ZNF540-204ENST00000586792 COPS2P61201 443 aa11.24□□□□□ -0.61
ZNF540-204ENST00000586792 ZPR1O75312 459 aa11.23□□□□□ -0.61
ZNF540-204ENST00000586792 PRIM1P49642 420 aaKnown RBP11.23□□□□□ -0.61
ZNF540-204ENST00000586792 ZNF775Q96BV0 537 aaPredicted RBP11.23□□□□□ -0.61
ZNF540-204ENST00000586792 SWT1Q5T5J6 900 aaKnown RBP11.22□□□□□ -0.61
ZNF540-204ENST00000586792 BBXQ8WY36 941 aaPredicted RBP11.22□□□□□ -0.61
ZNF540-204ENST00000586792 OSBPP22059 807 aa11.21□□□□□ -0.61
ZNF540-204ENST00000586792 WDR70Q9NW82 654 aa11.21□□□□□ -0.61
ZNF540-204ENST00000586792 CDHR5Q9HBB8 845 aa11.2□□□□□ -0.62
ZNF540-204ENST00000586792 TTC13Q8NBP0 860 aa11.19□□□□□ -0.62
ZNF540-204ENST00000586792 SLC19A1P41440 591 aa11.18□□□□□ -0.62
ZNF540-204ENST00000586792 PKDCCQ504Y2 493 aa11.18□□□□□ -0.62
ZNF540-204ENST00000586792 PCDHB3Q9Y5E6 796 aa11.17□□□□□ -0.62
ZNF540-204ENST00000586792 DGAT1O75907 488 aa11.16□□□□□ -0.62
ZNF540-204ENST00000586792 PADI6Q6TGC4 694 aa11.16□□□□□ -0.62
ZNF540-204ENST00000586792 RNF223E7ERA6 249 aa11.14□□□□□ -0.63
ZNF540-204ENST00000586792 SPRYD3Q8NCJ5 442 aa11.14□□□□□ -0.63
ZNF540-204ENST00000586792 PRR20EP86478 221 aa11.13□□□□□ -0.63
ZNF540-204ENST00000586792 PRR20CP86479 221 aa11.13□□□□□ -0.63
ZNF540-204ENST00000586792 PRR20DP86480 221 aa11.13□□□□□ -0.63
ZNF540-204ENST00000586792 PRR20BP86481 221 aa11.13□□□□□ -0.63
ZNF540-204ENST00000586792 PRR20AP86496 221 aa11.13□□□□□ -0.63
ZNF540-204ENST00000586792 TRIM67Q6ZTA4 783 aa11.13□□□□□ -0.63
Retrieved 100 of 20,778 RNA–protein pairs in 30.1 ms