RNA–Protein interactions for RNA: ENST00000584328.1

NF1-223, Transcript of neurofibromin 1, human

TSL 2

Gene NF1, Length 566 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
NF1-223	ENST00000584328	RBM33	Q96EV2	1170 aa	Known RBP	11.68	□□□□□ -0.54
NF1-223	ENST00000584328	PLSCR2	Q9NRY7	297 aa		11.68	□□□□□ -0.54
NF1-223	ENST00000584328	SPNS2	Q8IVW8	549 aa		11.67	□□□□□ -0.54
NF1-223	ENST00000584328	MLLT3	P42568	568 aa	Predicted RBP	11.64	□□□□□ -0.55
NF1-223	ENST00000584328	EN1	Q05925	392 aa	Predicted RBP	11.64	□□□□□ -0.55
NF1-223	ENST00000584328	C6orf132	Q5T0Z8	1188 aa		11.64	□□□□□ -0.55
NF1-223	ENST00000584328	SEMA3E	O15041	775 aa		11.63	□□□□□ -0.55
NF1-223	ENST00000584328	MAP3K7	O43318	606 aa		11.63	□□□□□ -0.55
NF1-223	ENST00000584328	OSBP	P22059	807 aa		11.62	□□□□□ -0.55
NF1-223	ENST00000584328	ADGRD1	Q6QNK2	874 aa		11.62	□□□□□ -0.55
NF1-223	ENST00000584328	PPP1R3G	B7ZBB8	358 aa		11.61	□□□□□ -0.55
NF1-223	ENST00000584328	TK2	O00142	265 aa		11.61	□□□□□ -0.55
NF1-223	ENST00000584328	PRIM1	P49642	420 aa	Known RBP	11.61	□□□□□ -0.55
NF1-223	ENST00000584328	COL9A1	P20849	921 aa		11.6	□□□□□ -0.55
NF1-223	ENST00000584328	TSR1	Q2NL82	804 aa	Known RBP	11.6	□□□□□ -0.55
NF1-223	ENST00000584328	ZBED2	Q9BTP6	218 aa		11.59	□□□□□ -0.55
NF1-223	ENST00000584328	VPS9D1	Q9Y2B5	631 aa		11.58	□□□□□ -0.56
NF1-223	ENST00000584328	MMRN1	Q13201	1228 aa		11.57	□□□□□ -0.56
NF1-223	ENST00000584328	SLC4A5	Q9BY07	1137 aa		11.57	□□□□□ -0.56
NF1-223	ENST00000584328	TESPA1	A2RU30	521 aa	Predicted RBP	11.54	□□□□□ -0.56
NF1-223	ENST00000584328	HR	O43593	1189 aa		11.54	□□□□□ -0.56
NF1-223	ENST00000584328	MYT1L	Q9UL68	1186 aa		11.54	□□□□□ -0.56
NF1-223	ENST00000584328	PROX2	Q3B8N5	592 aa		11.53	□□□□□ -0.56
NF1-223	ENST00000584328	CDHR5	Q9HBB8	845 aa		11.53	□□□□□ -0.56
NF1-223	ENST00000584328	SMYD5	Q6GMV2	418 aa		11.51	□□□□□ -0.57
NF1-223	ENST00000584328	STAC3	Q96MF2	364 aa		11.51	□□□□□ -0.57
NF1-223	ENST00000584328	SLC24A1	O60721	1099 aa		11.5	□□□□□ -0.57
NF1-223	ENST00000584328	CERK	Q8TCT0	537 aa		11.49	□□□□□ -0.57
NF1-223	ENST00000584328	RNF166	Q96A37	237 aa	Predicted RBP	11.48	□□□□□ -0.57
NF1-223	ENST00000584328	RABGEF1	Q9UJ41	708 aa		11.48	□□□□□ -0.57
NF1-223	ENST00000584328	TRIM6-TRIM34	B2RNG4	842 aa		11.47	□□□□□ -0.57
NF1-223	ENST00000584328	BHMG1	C9JSJ3	638 aa	Predicted RBP	11.47	□□□□□ -0.57
NF1-223	ENST00000584328	NUTM2F	A1L443	756 aa		11.46	□□□□□ -0.57
NF1-223	ENST00000584328	ONECUT3	O60422	494 aa	Predicted RBP	11.46	□□□□□ -0.57
NF1-223	ENST00000584328	CDCA7L	Q96GN5	454 aa		11.46	□□□□□ -0.57
NF1-223	ENST00000584328	NBPF3	Q9H094	633 aa		11.46	□□□□□ -0.57
NF1-223	ENST00000584328	KIAA1468	Q9P260	1216 aa		11.46	□□□□□ -0.57
NF1-223	ENST00000584328	PRSS12	P56730	875 aa		11.45	□□□□□ -0.58
NF1-223	ENST00000584328	RBM26	Q5T8P6	1007 aa	Known RBP	11.45	□□□□□ -0.58
NF1-223	ENST00000584328	NPDC1	Q9NQX5	325 aa	Predicted RBP	11.45	□□□□□ -0.58
NF1-223	ENST00000584328	MRPL50	Q8N5N7	158 aa	Known RBP	11.44	□□□□□ -0.58
NF1-223	ENST00000584328	TSKS	Q9UJT2	592 aa		11.44	□□□□□ -0.58
NF1-223	ENST00000584328	PACS2	Q86VP3	889 aa		11.42	□□□□□ -0.58
NF1-223	ENST00000584328	PTGDR	Q13258	359 aa		11.41	□□□□□ -0.58
NF1-223	ENST00000584328	GOLGA8CP	A6NN73	597 aa		11.4	□□□□□ -0.58
NF1-223	ENST00000584328	TULP1	O00294	542 aa	Predicted RBP	11.4	□□□□□ -0.58
NF1-223	ENST00000584328	RBM27	Q9P2N5	1060 aa	Known RBP	11.4	□□□□□ -0.58
NF1-223	ENST00000584328	FAM198A	Q9UFP1	575 aa		11.4	□□□□□ -0.58
NF1-223	ENST00000584328	PADI6	Q6TGC4	694 aa		11.39	□□□□□ -0.59
NF1-223	ENST00000584328	SEPT9	Q9UHD8	586 aa	Predicted RBP	11.39	□□□□□ -0.59
NF1-223	ENST00000584328	KCTD12	Q96CX2	325 aa	Known RBP	11.38	□□□□□ -0.59
NF1-223	ENST00000584328	FCHSD2	O94868	740 aa		11.37	□□□□□ -0.59
NF1-223	ENST00000584328	LAPTM4B	Q86VI4	370 aa		11.37	□□□□□ -0.59
NF1-223	ENST00000584328	TTC13	Q8NBP0	860 aa		11.36	□□□□□ -0.59
NF1-223	ENST00000584328	NBPF26	B4DH59	902 aa		11.35	□□□□□ -0.59
NF1-223	ENST00000584328	WNT2B	Q93097	391 aa		11.35	□□□□□ -0.59
NF1-223	ENST00000584328	C3orf80	F5H4A9	247 aa		11.34	□□□□□ -0.59
NF1-223	ENST00000584328	SMAP	O00193	183 aa		11.34	□□□□□ -0.59
NF1-223	ENST00000584328	FAM98C	Q17RN3	349 aa	Known RBP	11.34	□□□□□ -0.59
NF1-223	ENST00000584328	TATDN2	Q93075	761 aa		11.34	□□□□□ -0.59
NF1-223	ENST00000584328	PNMA3	Q9UL41	463 aa		11.34	□□□□□ -0.59
NF1-223	ENST00000584328	GPIHBP1	Q8IV16	184 aa		11.33	□□□□□ -0.6
NF1-223	ENST00000584328	NUDT18	Q6ZVK8	323 aa		11.32	□□□□□ -0.6
NF1-223	ENST00000584328	ZFR	Q96KR1	1074 aa	Known RBP	11.32	□□□□□ -0.6
NF1-223	ENST00000584328	HIC1	Q14526	733 aa		11.31	□□□□□ -0.6
NF1-223	ENST00000584328	ANKK1	Q8NFD2	765 aa		11.31	□□□□□ -0.6
NF1-223	ENST00000584328	GPR37	O15354	613 aa		11.3	□□□□□ -0.6
NF1-223	ENST00000584328	THSD4	Q6ZMP0	1018 aa		11.29	□□□□□ -0.6
NF1-223	ENST00000584328	DHX30	Q7L2E3	1194 aa	Known RBP eCLIP	11.29	□□□□□ -0.6
NF1-223	ENST00000584328	HCST	Q9UBK5	93 aa		11.29	□□□□□ -0.6
NF1-223	ENST00000584328	GNPAT	O15228	680 aa		11.28	□□□□□ -0.6
NF1-223	ENST00000584328	PTPN5	P54829	565 aa		11.27	□□□□□ -0.61
NF1-223	ENST00000584328	BCAM	P50895	628 aa		11.26	□□□□□ -0.61
NF1-223	ENST00000584328	LMOD2	Q6P5Q4	547 aa		11.26	□□□□□ -0.61
NF1-223	ENST00000584328	ADGRG1	Q9Y653	693 aa		11.26	□□□□□ -0.61
NF1-223	ENST00000584328	SOWAHB	A6NEL2	793 aa		11.25	□□□□□ -0.61
NF1-223	ENST00000584328	FECH	P22830	423 aa		11.25	□□□□□ -0.61
NF1-223	ENST00000584328	FAM161A	Q3B820	660 aa		11.25	□□□□□ -0.61
NF1-223	ENST00000584328	EYA1	Q99502	592 aa		11.25	□□□□□ -0.61
NF1-223	ENST00000584328	LRCH3	Q96II8	777 aa		11.24	□□□□□ -0.61
NF1-223	ENST00000584328	SAMD7	Q7Z3H4	446 aa		11.23	□□□□□ -0.61
NF1-223	ENST00000584328	RBM46	Q8TBY0	533 aa	Known RBP	11.23	□□□□□ -0.61
NF1-223	ENST00000584328	CDKN2AIP	Q9NXV6	580 aa	Predicted RBP	11.23	□□□□□ -0.61
NF1-223	ENST00000584328	HDGF	P51858	240 aa	Known RBP	11.21	□□□□□ -0.61
NF1-223	ENST00000584328	OAT	P04181	439 aa		11.19	□□□□□ -0.62
NF1-223	ENST00000584328	HPS5	Q9UPZ3	1129 aa		11.18	□□□□□ -0.62
NF1-223	ENST00000584328	DNAJB2	P25686	324 aa		11.17	□□□□□ -0.62
NF1-223	ENST00000584328	SWT1	Q5T5J6	900 aa	Known RBP	11.17	□□□□□ -0.62
NF1-223	ENST00000584328	BCAN	Q96GW7	911 aa		11.17	□□□□□ -0.62
NF1-223	ENST00000584328	TSR3	Q9UJK0	312 aa	Known RBP	11.17	□□□□□ -0.62
NF1-223	ENST00000584328	RCCD1	A6NED2	376 aa		11.16	□□□□□ -0.62
NF1-223	ENST00000584328	RNF40	O75150	1001 aa		11.16	□□□□□ -0.62
NF1-223	ENST00000584328	METTL3	Q86U44	580 aa	Known RBP	11.16	□□□□□ -0.62
NF1-223	ENST00000584328	PXYLP1	Q8TE99	480 aa		11.16	□□□□□ -0.62
NF1-223	ENST00000584328	WBP1L	Q9NX94	342 aa		11.16	□□□□□ -0.62
NF1-223	ENST00000584328	PPP4C	P60510	307 aa		11.14	□□□□□ -0.63
NF1-223	ENST00000584328	MAP2K5	Q13163	448 aa		11.14	□□□□□ -0.63
NF1-223	ENST00000584328	TMEM134	Q9H6X4	195 aa		11.14	□□□□□ -0.63
NF1-223	ENST00000584328	RPL17-C18orf32	A0A0A6YYL6	228 aa	Known RBP	11.13	□□□□□ -0.63
NF1-223	ENST00000584328	SLC4A3	P48751	1232 aa		11.12	□□□□□ -0.63

Retrieved 100 of 20,778 RNA–protein pairs in 12.1 ms