RNA–Protein interactions for RNA: ENST00000584328.1

NF1-223, Transcript of neurofibromin 1, humanhuman

TSL 2

Gene NF1, Length 566 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NF1-223ENST00000584328 AEBP2Q6ZN18 517 aaPredicted RBP27.03■■□□□ 1.92
NF1-223ENST00000584328 CHIC1Q5VXU3 224 aa26.21■■□□□ 1.79
NF1-223ENST00000584328 PHF23Q9BUL5 403 aaPredicted RBP23.03■■□□□ 1.28
NF1-223ENST00000584328 SENP3Q9H4L4 574 aaPredicted RBP22.98■■□□□ 1.27
NF1-223ENST00000584328 FOXD1Q16676 465 aa21.34■■□□□ 1.01
NF1-223ENST00000584328 PLPPR3Q6T4P5 718 aa21.21■□□□□ 0.99
NF1-223ENST00000584328 PPP6R1Q9UPN7 881 aa20.39■□□□□ 0.85
NF1-223ENST00000584328 ADRA2BP18089 450 aa20.37■□□□□ 0.85
NF1-223ENST00000584328 PIAS4Q8N2W9 510 aaPredicted RBP20.1■□□□□ 0.81
NF1-223ENST00000584328 MSH5O43196 834 aa19.76■□□□□ 0.75
NF1-223ENST00000584328 PPP4R3CPQ6ZMV5 832 aa18.67■□□□□ 0.58
NF1-223ENST00000584328 SCAF1Q9H7N4 1312 aaKnown RBP18.64■□□□□ 0.57
NF1-223ENST00000584328 MAPK8IP2Q13387 824 aaPredicted RBP18.54■□□□□ 0.56
NF1-223ENST00000584328 POTEDQ86YR6 584 aa18.33■□□□□ 0.52
NF1-223ENST00000584328 DMRT2Q9Y5R5 561 aa18.3■□□□□ 0.52
NF1-223ENST00000584328 CNKSR2Q8WXI2 1034 aa18.18■□□□□ 0.5
NF1-223ENST00000584328 NCBP3Q53F19 620 aaKnown RBP18.13■□□□□ 0.49
NF1-223ENST00000584328 KCNA4P22459 653 aa18.02■□□□□ 0.48
NF1-223ENST00000584328 RNF216Q9NWF9 866 aaPredicted RBP17.87■□□□□ 0.45
NF1-223ENST00000584328 NPM3O75607 178 aaKnown RBP17.85■□□□□ 0.45
NF1-223ENST00000584328 HOXD11P31277 338 aaPredicted RBP17.84■□□□□ 0.45
NF1-223ENST00000584328 DCAF8L1A6NGE4 600 aa17.57■□□□□ 0.4
NF1-223ENST00000584328 DNAJC5BQ9UF47 199 aa17.32■□□□□ 0.36
NF1-223ENST00000584328 SLC4A1APQ9BWU0 796 aaKnown RBP17.13■□□□□ 0.33
NF1-223ENST00000584328 GRWD1Q9BQ67 446 aaKnown RBP eCLIP17.04■□□□□ 0.32
NF1-223ENST00000584328 RNF39Q9H2S5 420 aa16.91■□□□□ 0.3
NF1-223ENST00000584328 SLC4A2P04920 1241 aa16.9■□□□□ 0.3
NF1-223ENST00000584328 U3KPZ7 1027 aaPredicted RBP16.72■□□□□ 0.27
NF1-223ENST00000584328 C1QBPQ07021 282 aaKnown RBP16.7■□□□□ 0.26
NF1-223ENST00000584328 CACNB1Q02641 598 aaPredicted RBP16.63■□□□□ 0.25
NF1-223ENST00000584328 FOXD4L1Q9NU39 408 aa16.63■□□□□ 0.25
NF1-223ENST00000584328 ZBTB22O15209 634 aa16.57■□□□□ 0.24
NF1-223ENST00000584328 MYCNP04198 464 aaPredicted RBP16.51■□□□□ 0.23
NF1-223ENST00000584328 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP16.45■□□□□ 0.22
NF1-223ENST00000584328 HNRNPUL2Q1KMD3 747 aaKnown RBP16.45■□□□□ 0.22
NF1-223ENST00000584328 EHMT2Q96KQ7 1210 aa16.44■□□□□ 0.22
NF1-223ENST00000584328 SAMD1Q6SPF0 538 aaPredicted RBP16.38■□□□□ 0.21
NF1-223ENST00000584328 APLP2Q06481 763 aa16.33■□□□□ 0.2
NF1-223ENST00000584328 SPINK5Q9NQ38 1064 aaPredicted RBP16.32■□□□□ 0.2
NF1-223ENST00000584328 CSRNP3Q8WYN3 585 aa16.31■□□□□ 0.2
NF1-223ENST00000584328 CAPN15O75808 1086 aa16.28■□□□□ 0.2
NF1-223ENST00000584328 TRHP20396 242 aaPredicted RBP16.15■□□□□ 0.18
NF1-223ENST00000584328 ZNF219Q9P2Y4 722 aaPredicted RBP16.13■□□□□ 0.17
NF1-223ENST00000584328 ATF5Q9Y2D1 282 aaPredicted RBP16.08■□□□□ 0.16
NF1-223ENST00000584328 ATXN8OSP0DMR3 200 aa16.06■□□□□ 0.16
NF1-223ENST00000584328 DSG3P32926 999 aa16.02■□□□□ 0.16
NF1-223ENST00000584328 ABCB7O75027 752 aa15.95■□□□□ 0.14
NF1-223ENST00000584328 POLA2Q14181 598 aa15.84■□□□□ 0.13
NF1-223ENST00000584328 ZBTB12Q9Y330 459 aaPredicted RBP15.56■□□□□ 0.08
NF1-223ENST00000584328 FBLN2P98095 1184 aa15.43■□□□□ 0.06
NF1-223ENST00000584328 MKRN4PQ13434 485 aaPredicted RBP15.36■□□□□ 0.05
NF1-223ENST00000584328 OSCARQ8IYS5 282 aa15.31■□□□□ 0.04
NF1-223ENST00000584328 RBM42Q9BTD8 480 aaKnown RBP15.28■□□□□ 0.04
NF1-223ENST00000584328 SPDYE2BA6NHP3 402 aa15.12■□□□□ 0.01
NF1-223ENST00000584328 SPDYE6P0CI01 402 aa15.12■□□□□ 0.01
NF1-223ENST00000584328 SPDYE2Q495Y8 402 aa15.12■□□□□ 0.01
NF1-223ENST00000584328 AKT1S1Q96B36 256 aa15.05■□□□□ -0
NF1-223ENST00000584328 ZNF692Q9BU19 519 aaPredicted RBP15.05■□□□□ -0
NF1-223ENST00000584328 SSUH2Q9Y2M2 353 aa14.97□□□□□ -0.01
NF1-223ENST00000584328 SPDYE4A6NLX3 237 aa14.94□□□□□ -0.02
NF1-223ENST00000584328 REM2Q8IYK8 340 aaPredicted RBP14.91□□□□□ -0.02
NF1-223ENST00000584328 PABPN1Q86U42 306 aaKnown RBP eCLIP14.84□□□□□ -0.03
NF1-223ENST00000584328 FKBP8Q14318 412 aa14.78□□□□□ -0.04
NF1-223ENST00000584328 PITPNM1O00562 1244 aa14.75□□□□□ -0.05
NF1-223ENST00000584328 CHRDL2Q6WN34 429 aa14.73□□□□□ -0.05
NF1-223ENST00000584328 SPDYE1Q8NFV5 336 aaPredicted RBP14.73□□□□□ -0.05
NF1-223ENST00000584328 CLEC11AQ9Y240 323 aa14.69□□□□□ -0.06
NF1-223ENST00000584328 PROM2Q8N271 834 aa14.64□□□□□ -0.07
NF1-223ENST00000584328 STAG3Q9UJ98 1225 aa14.55□□□□□ -0.08
NF1-223ENST00000584328 PRR29P0C7W0 189 aa14.52□□□□□ -0.09
NF1-223ENST00000584328 PIP4P2Q8N4L2 257 aa14.5□□□□□ -0.09
NF1-223ENST00000584328 FXR2P51116 673 aaKnown RBP eCLIP14.49□□□□□ -0.092e-7■■■■■ 30
NF1-223ENST00000584328 POTEHQ6S545 545 aa14.48□□□□□ -0.09
NF1-223ENST00000584328 PRKAR2AP13861 404 aaKnown RBP14.38□□□□□ -0.11
NF1-223ENST00000584328 CHADLQ6NUI6 762 aa14.34□□□□□ -0.11
NF1-223ENST00000584328 FBXO3Q9UK99 471 aa14.3□□□□□ -0.12
NF1-223ENST00000584328 CREBZFQ9NS37 354 aa14.28□□□□□ -0.12
NF1-223ENST00000584328 MIER1Q8N108 512 aa14.2□□□□□ -0.14
NF1-223ENST00000584328 FARP1Q9Y4F1 1045 aaPredicted RBP14.18□□□□□ -0.14
NF1-223ENST00000584328 PLCD3Q8N3E9 789 aa14.17□□□□□ -0.14
NF1-223ENST00000584328 PLEKHG5O94827 1062 aa14.15□□□□□ -0.14
NF1-223ENST00000584328 VASPP50552 380 aaPredicted RBP14.11□□□□□ -0.15
NF1-223ENST00000584328 HAX1O00165 279 aa14.1□□□□□ -0.15
NF1-223ENST00000584328 MNX1P50219 401 aaPredicted RBP14.09□□□□□ -0.15
NF1-223ENST00000584328 NPM1P06748 294 aaKnown RBP eCLIP14.05□□□□□ -0.16
NF1-223ENST00000584328 C19orf67A6NJJ6 358 aa14.01□□□□□ -0.17
NF1-223ENST00000584328 ZBTB47Q9UFB7 747 aaPredicted RBP14□□□□□ -0.17
NF1-223ENST00000584328 CD44P16070 742 aaKnown RBP13.96□□□□□ -0.17
NF1-223ENST00000584328 EVX2Q03828 476 aa13.95□□□□□ -0.18
NF1-223ENST00000584328 KLHL34Q8N239 644 aa13.94□□□□□ -0.18
NF1-223ENST00000584328 IFNLR1Q8IU57 520 aaPredicted RBP13.9□□□□□ -0.18
NF1-223ENST00000584328 PAK3O75914 559 aaPredicted RBP13.87□□□□□ -0.19
NF1-223ENST00000584328 ZRANB1Q9UGI0 708 aa13.85□□□□□ -0.19
NF1-223ENST00000584328 NUBP1P53384 320 aa13.84□□□□□ -0.19
NF1-223ENST00000584328 SP7Q8TDD2 431 aaPredicted RBP13.84□□□□□ -0.19
NF1-223ENST00000584328 RASEFQ8IZ41 740 aa13.83□□□□□ -0.2
NF1-223ENST00000584328 TSPYL2Q9H2G4 693 aaPredicted RBP13.82□□□□□ -0.2
NF1-223ENST00000584328 SPOCK2Q92563 424 aa13.77□□□□□ -0.21
NF1-223ENST00000584328 ZNF579Q8NAF0 562 aaKnown RBP13.75□□□□□ -0.21
NF1-223ENST00000584328 FAM212AQ96EL1 285 aa13.75□□□□□ -0.21
Retrieved 100 of 20,778 RNA–protein pairs in 18.8 ms