RNA–Protein interactions for RNA: ENST00000583595.1

SS18-223, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 3

Gene SS18, Length 375 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-223ENST00000583595 DDX12PQ92771 950 aa9.8□□□□□ -0.84
SS18-223ENST00000583595 MYT1LQ9UL68 1186 aa9.8□□□□□ -0.84
SS18-223ENST00000583595 TK2O00142 265 aa9.79□□□□□ -0.84
SS18-223ENST00000583595 TULP1O00294 542 aaPredicted RBP9.79□□□□□ -0.84
SS18-223ENST00000583595 FBXW7Q969H0 707 aa9.79□□□□□ -0.84
SS18-223ENST00000583595 EPAS1Q99814 870 aa9.78□□□□□ -0.84
SS18-223ENST00000583595 NBR1Q14596 966 aa9.77□□□□□ -0.85
SS18-223ENST00000583595 RNF166Q96A37 237 aaPredicted RBP9.77□□□□□ -0.85
SS18-223ENST00000583595 VPS9D1Q9Y2B5 631 aa9.75□□□□□ -0.85
SS18-223ENST00000583595 KCNV2Q8TDN2 545 aa9.74□□□□□ -0.85
SS18-223ENST00000583595 RBM33Q96EV2 1170 aaKnown RBP9.74□□□□□ -0.85
SS18-223ENST00000583595 GTF3C3Q9Y5Q9 886 aa9.74□□□□□ -0.85
SS18-223ENST00000583595 HRO43593 1189 aa9.73□□□□□ -0.85
SS18-223ENST00000583595 SLC4A5Q9BY07 1137 aa9.73□□□□□ -0.85
SS18-223ENST00000583595 GRXCR2A6NFK2 248 aa9.72□□□□□ -0.85
SS18-223ENST00000583595 C6orf132Q5T0Z8 1188 aa9.72□□□□□ -0.85
SS18-223ENST00000583595 ARHGEF1Q92888 912 aaKnown RBP9.72□□□□□ -0.85
SS18-223ENST00000583595 ZBED2Q9BTP6 218 aa9.72□□□□□ -0.85
SS18-223ENST00000583595 PPP1R3GB7ZBB8 358 aa9.71□□□□□ -0.86
SS18-223ENST00000583595 COL9A1P20849 921 aa9.71□□□□□ -0.86
SS18-223ENST00000583595 STAC3Q96MF2 364 aa9.7□□□□□ -0.86
SS18-223ENST00000583595 MAP3K7O43318 606 aa9.68□□□□□ -0.86
SS18-223ENST00000583595 EN1Q05925 392 aaPredicted RBP9.68□□□□□ -0.86
SS18-223ENST00000583595 P3H3Q8IVL6 736 aa9.67□□□□□ -0.86
SS18-223ENST00000583595 PRIM1P49642 420 aaKnown RBP9.66□□□□□ -0.86
SS18-223ENST00000583595 TSR1Q2NL82 804 aaKnown RBP9.66□□□□□ -0.86
SS18-223ENST00000583595 PROX2Q3B8N5 592 aa9.66□□□□□ -0.86
SS18-223ENST00000583595 BHMG1C9JSJ3 638 aaPredicted RBP9.65□□□□□ -0.86
SS18-223ENST00000583595 OSBPP22059 807 aa9.65□□□□□ -0.86
SS18-223ENST00000583595 MLLT3P42568 568 aaPredicted RBP9.62□□□□□ -0.87
SS18-223ENST00000583595 MRPL50Q8N5N7 158 aaKnown RBP9.62□□□□□ -0.87
SS18-223ENST00000583595 KCTD12Q96CX2 325 aaKnown RBP9.62□□□□□ -0.87
SS18-223ENST00000583595 NBPF3Q9H094 633 aa9.62□□□□□ -0.87
SS18-223ENST00000583595 RABGEF1Q9UJ41 708 aa9.62□□□□□ -0.87
SS18-223ENST00000583595 KIAA1468Q9P260 1216 aa9.61□□□□□ -0.87
SS18-223ENST00000583595 GOLGA8CPA6NN73 597 aa9.59□□□□□ -0.87
SS18-223ENST00000583595 TRIM6-TRIM34B2RNG4 842 aa9.59□□□□□ -0.87
SS18-223ENST00000583595 ONECUT3O60422 494 aaPredicted RBP9.59□□□□□ -0.87
SS18-223ENST00000583595 CDHR5Q9HBB8 845 aa9.58□□□□□ -0.88
SS18-223ENST00000583595 HCSTQ9UBK5 93 aa9.58□□□□□ -0.88
SS18-223ENST00000583595 SEMA3EO15041 775 aa9.57□□□□□ -0.88
SS18-223ENST00000583595 CERKQ8TCT0 537 aa9.57□□□□□ -0.88
SS18-223ENST00000583595 TSKSQ9UJT2 592 aa9.56□□□□□ -0.88
SS18-223ENST00000583595 PRSS12P56730 875 aa9.55□□□□□ -0.88
SS18-223ENST00000583595 PACS2Q86VP3 889 aa9.55□□□□□ -0.88
SS18-223ENST00000583595 WNT2BQ93097 391 aa9.55□□□□□ -0.88
SS18-223ENST00000583595 CDCA7LQ96GN5 454 aa9.55□□□□□ -0.88
SS18-223ENST00000583595 ARXQ96QS3 562 aa9.55□□□□□ -0.88
SS18-223ENST00000583595 LAPTM4BQ86VI4 370 aa9.54□□□□□ -0.88
SS18-223ENST00000583595 SEPT9Q9UHD8 586 aaPredicted RBP9.54□□□□□ -0.88
SS18-223ENST00000583595 PTPN5P54829 565 aa9.53□□□□□ -0.88
SS18-223ENST00000583595 NPDC1Q9NQX5 325 aaPredicted RBP9.53□□□□□ -0.88
SS18-223ENST00000583595 TMEM132AQ24JP5 1023 aa9.52□□□□□ -0.89
SS18-223ENST00000583595 THSD4Q6ZMP0 1018 aa9.52□□□□□ -0.89
SS18-223ENST00000583595 FAM198AQ9UFP1 575 aa9.52□□□□□ -0.89
SS18-223ENST00000583595 ANKK1Q8NFD2 765 aa9.51□□□□□ -0.89
SS18-223ENST00000583595 FAM98CQ17RN3 349 aaKnown RBP9.5□□□□□ -0.89
SS18-223ENST00000583595 ZFRQ96KR1 1074 aaKnown RBP9.5□□□□□ -0.89
SS18-223ENST00000583595 TESPA1A2RU30 521 aaPredicted RBP9.49□□□□□ -0.89
SS18-223ENST00000583595 NUTM2FA1L443 756 aa9.48□□□□□ -0.89
SS18-223ENST00000583595 SMAPO00193 183 aa9.48□□□□□ -0.89
SS18-223ENST00000583595 ERICH6Q7L0X2 663 aa9.48□□□□□ -0.89
SS18-223ENST00000583595 RBM27Q9P2N5 1060 aaKnown RBP9.48□□□□□ -0.89
SS18-223ENST00000583595 DAXXQ9UER7 740 aaPredicted RBP9.48□□□□□ -0.89
SS18-223ENST00000583595 C3orf80F5H4A9 247 aa9.47□□□□□ -0.89
SS18-223ENST00000583595 BCAMP50895 628 aa9.47□□□□□ -0.89
SS18-223ENST00000583595 PADI6Q6TGC4 694 aa9.47□□□□□ -0.89
SS18-223ENST00000583595 TATDN2Q93075 761 aa9.47□□□□□ -0.89
SS18-223ENST00000583595 NBPF26B4DH59 902 aa9.46□□□□□ -0.9
SS18-223ENST00000583595 SMYD5Q6GMV2 418 aa9.46□□□□□ -0.9
SS18-223ENST00000583595 TTC13Q8NBP0 860 aa9.46□□□□□ -0.9
SS18-223ENST00000583595 PNMA3Q9UL41 463 aa9.46□□□□□ -0.9
SS18-223ENST00000583595 SOWAHBA6NEL2 793 aa9.45□□□□□ -0.9
SS18-223ENST00000583595 PTGDRQ13258 359 aa9.45□□□□□ -0.9
SS18-223ENST00000583595 NUDT18Q6ZVK8 323 aa9.44□□□□□ -0.9
SS18-223ENST00000583595 RBM26Q5T8P6 1007 aaKnown RBP9.43□□□□□ -0.9
SS18-223ENST00000583595 CDKN2AIPQ9NXV6 580 aaPredicted RBP9.43□□□□□ -0.9
SS18-223ENST00000583595 C14orf37Q86TY3 774 aa9.42□□□□□ -0.9
SS18-223ENST00000583595 LRCH3Q96II8 777 aa9.42□□□□□ -0.9
SS18-223ENST00000583595 PLA2G2EQ9NZK7 142 aa9.42□□□□□ -0.9
SS18-223ENST00000583595 FCHSD2O94868 740 aa9.41□□□□□ -0.9
SS18-223ENST00000583595 WBP1LQ9NX94 342 aa9.4□□□□□ -0.9
SS18-223ENST00000583595 SAMD7Q7Z3H4 446 aa9.39□□□□□ -0.91
SS18-223ENST00000583595 HPS5Q9UPZ3 1129 aa9.39□□□□□ -0.91
SS18-223ENST00000583595 TSR3Q9UJK0 312 aaKnown RBP9.38□□□□□ -0.91
SS18-223ENST00000583595 HDGFP51858 240 aaKnown RBP9.37□□□□□ -0.91
SS18-223ENST00000583595 EYA1Q99502 592 aa9.37□□□□□ -0.91
SS18-223ENST00000583595 PPP4CP60510 307 aa9.35□□□□□ -0.91
SS18-223ENST00000583595 FAM161AQ3B820 660 aa9.35□□□□□ -0.91
SS18-223ENST00000583595 NYAP1Q6ZVC0 841 aa9.35□□□□□ -0.91
SS18-223ENST00000583595 HOMEZQ8IX15 550 aa9.35□□□□□ -0.91
SS18-223ENST00000583595 ADGRG1Q9Y653 693 aa9.35□□□□□ -0.91
SS18-223ENST00000583595 HIC1Q14526 733 aa9.34□□□□□ -0.91
SS18-223ENST00000583595 RBM46Q8TBY0 533 aaKnown RBP9.34□□□□□ -0.91
SS18-223ENST00000583595 SWT1Q5T5J6 900 aaKnown RBP9.33□□□□□ -0.92
SS18-223ENST00000583595 DHX30Q7L2E3 1194 aaKnown RBP eCLIP9.33□□□□□ -0.92
SS18-223ENST00000583595 GPR37O15354 613 aa9.32□□□□□ -0.92
SS18-223ENST00000583595 RNF40O75150 1001 aa9.32□□□□□ -0.92
SS18-223ENST00000583595 GNPATO15228 680 aa9.31□□□□□ -0.92
SS18-223ENST00000583595 FECHP22830 423 aa9.31□□□□□ -0.92
Retrieved 100 of 20,778 RNA–protein pairs in 39.7 ms