RNA–Protein interactions for RNA: ENST00000581711.1

SMCHD1-207, Transcript of structural maintenance of chromosomes flexible hinge domain containing 1, humanhuman

TSL 4

Gene SMCHD1, Length 546 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMCHD1-207ENST00000581711 TYW1BQ6NUM6 668 aa14.23□□□□□ -0.13
SMCHD1-207ENST00000581711 FBXW7Q969H0 707 aa14.23□□□□□ -0.13
SMCHD1-207ENST00000581711 ANKK1Q8NFD2 765 aa14.21□□□□□ -0.13
SMCHD1-207ENST00000581711 BCAMP50895 628 aa14.15□□□□□ -0.14
SMCHD1-207ENST00000581711 CAMK2BQ13554 666 aa14.15□□□□□ -0.14
SMCHD1-207ENST00000581711 LAPTM4BQ86VI4 370 aa14.15□□□□□ -0.14
SMCHD1-207ENST00000581711 KIAA1468Q9P260 1216 aa14.14□□□□□ -0.15
SMCHD1-207ENST00000581711 EPAS1Q99814 870 aa14.13□□□□□ -0.15
SMCHD1-207ENST00000581711 SOWAHBA6NEL2 793 aa14.12□□□□□ -0.15
SMCHD1-207ENST00000581711 DPYSL4O14531 572 aa14.12□□□□□ -0.15
SMCHD1-207ENST00000581711 C6orf132Q5T0Z8 1188 aa14.12□□□□□ -0.15
SMCHD1-207ENST00000581711 IRX2Q9BZI1 471 aaPredicted RBP14.12□□□□□ -0.15
SMCHD1-207ENST00000581711 ITGBL1O95965 494 aaPredicted RBP14.11□□□□□ -0.15
SMCHD1-207ENST00000581711 ZFRQ96KR1 1074 aaKnown RBP14.11□□□□□ -0.15
SMCHD1-207ENST00000581711 ONECUT3O60422 494 aaPredicted RBP14.09□□□□□ -0.15
SMCHD1-207ENST00000581711 SEPT9Q9UHD8 586 aaPredicted RBP14.08□□□□□ -0.16
SMCHD1-207ENST00000581711 NYAP1Q6ZVC0 841 aa14.06□□□□□ -0.16
SMCHD1-207ENST00000581711 RBM33Q96EV2 1170 aaKnown RBP14.06□□□□□ -0.16
SMCHD1-207ENST00000581711 TRIM6-TRIM34B2RNG4 842 aa14.05□□□□□ -0.16
SMCHD1-207ENST00000581711 WBP1LQ9NX94 342 aa14.05□□□□□ -0.16
SMCHD1-207ENST00000581711 DDX12PQ92771 950 aa14.04□□□□□ -0.16
SMCHD1-207ENST00000581711 FAM98CQ17RN3 349 aaKnown RBP14.02□□□□□ -0.17
SMCHD1-207ENST00000581711 KCNC4Q03721 635 aa13.97□□□□□ -0.17
SMCHD1-207ENST00000581711 CDKN2AIPQ9NXV6 580 aaPredicted RBP13.97□□□□□ -0.17
SMCHD1-207ENST00000581711 EN1Q05925 392 aaPredicted RBP13.96□□□□□ -0.17
SMCHD1-207ENST00000581711 NBR1Q14596 966 aa13.96□□□□□ -0.17
SMCHD1-207ENST00000581711 LRCH3Q96II8 777 aa13.96□□□□□ -0.17
SMCHD1-207ENST00000581711 TSR3Q9UJK0 312 aaKnown RBP13.95□□□□□ -0.18
SMCHD1-207ENST00000581711 HPS5Q9UPZ3 1129 aa13.95□□□□□ -0.18
SMCHD1-207ENST00000581711 MAP3K7O43318 606 aa13.94□□□□□ -0.18
SMCHD1-207ENST00000581711 PDIA6Q15084 440 aa13.94□□□□□ -0.18
SMCHD1-207ENST00000581711 TSR1Q2NL82 804 aaKnown RBP13.94□□□□□ -0.18
SMCHD1-207ENST00000581711 TSKSQ9UJT2 592 aa13.93□□□□□ -0.18
SMCHD1-207ENST00000581711 PACS2Q86VP3 889 aa13.92□□□□□ -0.18
SMCHD1-207ENST00000581711 BBXQ8WY36 941 aaPredicted RBP13.91□□□□□ -0.18
SMCHD1-207ENST00000581711 SPDYE16A6NNV3 312 aaPredicted RBP13.87□□□□□ -0.19
SMCHD1-207ENST00000581711 CDCA7LQ96GN5 454 aa13.84□□□□□ -0.19
SMCHD1-207ENST00000581711 PPP4CP60510 307 aa13.83□□□□□ -0.2
SMCHD1-207ENST00000581711 PRSS12P56730 875 aa13.82□□□□□ -0.2
SMCHD1-207ENST00000581711 Q6ZNB5 142 aa13.82□□□□□ -0.2
SMCHD1-207ENST00000581711 SMAPO00193 183 aa13.81□□□□□ -0.2
SMCHD1-207ENST00000581711 SAMD7Q7Z3H4 446 aa13.81□□□□□ -0.2
SMCHD1-207ENST00000581711 FAM198AQ9UFP1 575 aa13.81□□□□□ -0.2
SMCHD1-207ENST00000581711 PRIM1P49642 420 aaKnown RBP13.8□□□□□ -0.2
SMCHD1-207ENST00000581711 E2F4Q16254 413 aa13.79□□□□□ -0.2
SMCHD1-207ENST00000581711 SPRYD3Q8NCJ5 442 aa13.78□□□□□ -0.2
SMCHD1-207ENST00000581711 CERKQ8TCT0 537 aa13.78□□□□□ -0.2
SMCHD1-207ENST00000581711 GRXCR2A6NFK2 248 aa13.77□□□□□ -0.21
SMCHD1-207ENST00000581711 C3orf80F5H4A9 247 aa13.77□□□□□ -0.21
SMCHD1-207ENST00000581711 TJAP1Q5JTD0 557 aa13.77□□□□□ -0.21
SMCHD1-207ENST00000581711 NBPF26B4DH59 902 aa13.75□□□□□ -0.21
SMCHD1-207ENST00000581711 TATDN2Q93075 761 aa13.75□□□□□ -0.21
SMCHD1-207ENST00000581711 ARIH1Q9Y4X5 557 aaPredicted RBP13.75□□□□□ -0.21
SMCHD1-207ENST00000581711 PNMA3Q9UL41 463 aa13.74□□□□□ -0.21
SMCHD1-207ENST00000581711 LAPTM4AQ15012 233 aa13.71□□□□□ -0.21
SMCHD1-207ENST00000581711 MTRQ99707 1265 aa13.71□□□□□ -0.21
SMCHD1-207ENST00000581711 CDHR5Q9HBB8 845 aa13.71□□□□□ -0.21
SMCHD1-207ENST00000581711 ZBTB4Q9P1Z0 1013 aaPredicted RBP13.71□□□□□ -0.21
SMCHD1-207ENST00000581711 OSBPP22059 807 aa13.69□□□□□ -0.22
SMCHD1-207ENST00000581711 IL21Q9HBE4 155 aa13.69□□□□□ -0.22
SMCHD1-207ENST00000581711 WDR70Q9NW82 654 aa13.69□□□□□ -0.22
SMCHD1-207ENST00000581711 NUDT18Q6ZVK8 323 aa13.68□□□□□ -0.22
SMCHD1-207ENST00000581711 RBM27Q9P2N5 1060 aaKnown RBP13.68□□□□□ -0.22
SMCHD1-207ENST00000581711 GFRA3O60609 400 aa13.66□□□□□ -0.22
SMCHD1-207ENST00000581711 RNF40O75150 1001 aa13.66□□□□□ -0.22
SMCHD1-207ENST00000581711 PRKD2Q9BZL6 878 aa13.66□□□□□ -0.22
SMCHD1-207ENST00000581711 PPP1R18Q6NYC8 613 aa13.65□□□□□ -0.22
SMCHD1-207ENST00000581711 HDGFP51858 240 aaKnown RBP13.64□□□□□ -0.23
SMCHD1-207ENST00000581711 LCE2BO14633 110 aa13.63□□□□□ -0.23
SMCHD1-207ENST00000581711 APLP1P51693 650 aa13.63□□□□□ -0.23
SMCHD1-207ENST00000581711 ZNF516Q92618 1163 aa13.63□□□□□ -0.23
SMCHD1-207ENST00000581711 PAXIP1Q6ZW49 1069 aaPredicted RBP13.61□□□□□ -0.23
SMCHD1-207ENST00000581711 CFAP44Q96MT7 982 aa13.61□□□□□ -0.23
SMCHD1-207ENST00000581711 TTC13Q8NBP0 860 aa13.6□□□□□ -0.23
SMCHD1-207ENST00000581711 TRAF7Q6Q0C0 670 aa13.58□□□□□ -0.24
SMCHD1-207ENST00000581711 PADI6Q6TGC4 694 aa13.58□□□□□ -0.24
SMCHD1-207ENST00000581711 EIF4ENIF1Q9NRA8 985 aaKnown RBP13.58□□□□□ -0.24
SMCHD1-207ENST00000581711 V9GY48 417 aaPredicted RBP13.58□□□□□ -0.24
SMCHD1-207ENST00000581711 NPDC1Q9NQX5 325 aaPredicted RBP13.57□□□□□ -0.24
SMCHD1-207ENST00000581711 NRG2O14511 850 aaPredicted RBP13.56□□□□□ -0.24
SMCHD1-207ENST00000581711 SWT1Q5T5J6 900 aaKnown RBP13.56□□□□□ -0.24
SMCHD1-207ENST00000581711 NKX2-3Q8TAU0 364 aa13.56□□□□□ -0.24
SMCHD1-207ENST00000581711 NECTIN2Q92692 538 aa13.56□□□□□ -0.24
SMCHD1-207ENST00000581711 SLF2Q8IX21 1173 aa13.54□□□□□ -0.24
SMCHD1-207ENST00000581711 COPS2P61201 443 aa13.52□□□□□ -0.25
SMCHD1-207ENST00000581711 EYA1Q99502 592 aa13.49□□□□□ -0.25
SMCHD1-207ENST00000581711 GGCXP38435 758 aa13.48□□□□□ -0.25
SMCHD1-207ENST00000581711 SLC4A3P48751 1232 aa13.47□□□□□ -0.25
SMCHD1-207ENST00000581711 AMER1Q5JTC6 1135 aaPredicted RBP13.46□□□□□ -0.25
SMCHD1-207ENST00000581711 PDZRN3Q9UPQ7 1066 aa13.45□□□□□ -0.26
SMCHD1-207ENST00000581711 ZPR1O75312 459 aa13.44□□□□□ -0.26
SMCHD1-207ENST00000581711 TMUB1Q9BVT8 246 aa13.43□□□□□ -0.26
SMCHD1-207ENST00000581711 PRR14Q9BWN1 585 aa13.42□□□□□ -0.26
SMCHD1-207ENST00000581711 MLLT3P42568 568 aaPredicted RBP13.41□□□□□ -0.26
SMCHD1-207ENST00000581711 PCDHB3Q9Y5E6 796 aa13.41□□□□□ -0.26
SMCHD1-207ENST00000581711 RTN4Q9NQC3 1192 aaKnown RBP13.39□□□□□ -0.27
SMCHD1-207ENST00000581711 BLOC1S3Q6QNY0 202 aa13.38□□□□□ -0.27
SMCHD1-207ENST00000581711 ARHGEF1Q92888 912 aaKnown RBP13.37□□□□□ -0.27
SMCHD1-207ENST00000581711 DNAJB2P25686 324 aa13.36□□□□□ -0.27
SMCHD1-207ENST00000581711 PTGDRQ13258 359 aa13.36□□□□□ -0.27
Retrieved 100 of 20,778 RNA–protein pairs in 12.8 ms