RNA–Protein interactions for RNA: ENST00000580095.5

TOP3A-209, Transcript of DNA topoisomerase III alpha, humanhuman

TSL 1 (best)

Gene TOP3A, Length 2,929 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TOP3A-209ENST00000580095 RALGAPBQ86X10 1494 aa14.23□□□□□ -0.13
TOP3A-209ENST00000580095 PNISRQ8TF01 805 aaKnown RBP14.23□□□□□ -0.13
TOP3A-209ENST00000580095 CCDC144AA2RUR9 1427 aa14.22□□□□□ -0.13
TOP3A-209ENST00000580095 FAM135AQ9P2D6 1515 aa14.22□□□□□ -0.13
TOP3A-209ENST00000580095 UHRF1BP1Q6BDS2 1440 aa14.22□□□□□ -0.13
TOP3A-209ENST00000580095 PLEKHH2Q8IVE3 1493 aa14.22□□□□□ -0.13
TOP3A-209ENST00000580095 TTC37Q6PGP7 1564 aa14.21□□□□□ -0.14
TOP3A-209ENST00000580095 SLC24A1O60721 1099 aa14.21□□□□□ -0.14
TOP3A-209ENST00000580095 OSCARQ8IYS5 282 aa14.21□□□□□ -0.14
TOP3A-209ENST00000580095 CC2D1BQ5T0F9 858 aaKnown RBP14.2□□□□□ -0.14
TOP3A-209ENST00000580095 CDC42BPBQ9Y5S2 1711 aa14.2□□□□□ -0.14
TOP3A-209ENST00000580095 PLA2R1Q13018 1463 aa14.19□□□□□ -0.14
TOP3A-209ENST00000580095 MSH5O43196 834 aa14.18□□□□□ -0.14
TOP3A-209ENST00000580095 AFAP1Q8N556 730 aa14.18□□□□□ -0.14
TOP3A-209ENST00000580095 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP14.18□□□□□ -0.14
TOP3A-209ENST00000580095 RSPH4AQ5TD94 716 aa14.18□□□□□ -0.14
TOP3A-209ENST00000580095 NUDCQ9Y266 331 aa14.17□□□□□ -0.14
TOP3A-209ENST00000580095 ARHGEF12Q9NZN5 1544 aa14.17□□□□□ -0.14
TOP3A-209ENST00000580095 ARHGEF5Q12774 1597 aa14.16□□□□□ -0.14
TOP3A-209ENST00000580095 ARID4BQ4LE39 1312 aaPredicted RBP14.16□□□□□ -0.14
TOP3A-209ENST00000580095 PRAG1Q86YV5 1406 aa14.16□□□□□ -0.14
TOP3A-209ENST00000580095 KDM5DQ9BY66 1539 aa14.15□□□□□ -0.14
TOP3A-209ENST00000580095 MYT1LQ9UL68 1186 aa14.15□□□□□ -0.14
TOP3A-209ENST00000580095 PREX2Q70Z35 1606 aa14.15□□□□□ -0.14
TOP3A-209ENST00000580095 ANO8Q9HCE9 1232 aaPredicted RBP14.15□□□□□ -0.14
TOP3A-209ENST00000580095 POLR1AO95602 1720 aaPredicted RBP14.14□□□□□ -0.15
TOP3A-209ENST00000580095 MYBBP1AQ9BQG0 1328 aaKnown RBP14.14□□□□□ -0.15
TOP3A-209ENST00000580095 DISP3Q9P2K9 1392 aa14.14□□□□□ -0.15
TOP3A-209ENST00000580095 UHRF1BP1LA0JNW5 1464 aa14.14□□□□□ -0.15
TOP3A-209ENST00000580095 A2MP01023 1474 aa14.13□□□□□ -0.15
TOP3A-209ENST00000580095 EFCAB2Q5VUJ9 269 aa14.13□□□□□ -0.15
TOP3A-209ENST00000580095 SMG6Q86US8 1419 aaKnown RBP14.13□□□□□ -0.15
TOP3A-209ENST00000580095 PANK3Q9H999 370 aa14.12□□□□□ -0.15
TOP3A-209ENST00000580095 TRAPPC8Q9Y2L5 1435 aa14.12□□□□□ -0.15
TOP3A-209ENST00000580095 TESK2Q96S53 571 aa14.12□□□□□ -0.15
TOP3A-209ENST00000580095 PER1O15534 1290 aaPredicted RBP14.1□□□□□ -0.15
TOP3A-209ENST00000580095 RALBP1Q15311 655 aa14.1□□□□□ -0.15
TOP3A-209ENST00000580095 ERICH6BQ5W0A0 696 aa14.1□□□□□ -0.15
TOP3A-209ENST00000580095 CCDC136Q96JN2 1154 aa14.1□□□□□ -0.15
TOP3A-209ENST00000580095 ABCC2Q92887 1545 aa14.1□□□□□ -0.15
TOP3A-209ENST00000580095 CDCA7LQ96GN5 454 aa14.09□□□□□ -0.15
TOP3A-209ENST00000580095 SPAG9O60271 1321 aaKnown RBP14.09□□□□□ -0.15
TOP3A-209ENST00000580095 KTN1Q86UP2 1357 aaKnown RBP14.09□□□□□ -0.15
TOP3A-209ENST00000580095 NLRP13Q86W25 1043 aa14.08□□□□□ -0.16
TOP3A-209ENST00000580095 BRD4O60885 1362 aaPredicted RBP14.07□□□□□ -0.16
TOP3A-209ENST00000580095 PLCH2O75038 1416 aa14.07□□□□□ -0.16
TOP3A-209ENST00000580095 LRPPRCP42704 1394 aaKnown RBP14.06□□□□□ -0.16
TOP3A-209ENST00000580095 TMF1P82094 1093 aa14.05□□□□□ -0.16
TOP3A-209ENST00000580095 ERBINQ96RT1 1412 aa14.04□□□□□ -0.16
TOP3A-209ENST00000580095 KIF3BO15066 747 aa14.04□□□□□ -0.16
TOP3A-209ENST00000580095 TRPM1Q7Z4N2 1603 aa14.04□□□□□ -0.16
TOP3A-209ENST00000580095 PARD3Q8TEW0 1356 aa14.03□□□□□ -0.16
TOP3A-209ENST00000580095 PLIN1O60240 522 aa14.03□□□□□ -0.16
TOP3A-209ENST00000580095 EXOC6Q8TAG9 804 aa14.03□□□□□ -0.16
TOP3A-209ENST00000580095 GPRASP1Q5JY77 1395 aa14.03□□□□□ -0.16
TOP3A-209ENST00000580095 MYO5CQ9NQX4 1742 aa14.02□□□□□ -0.16
TOP3A-209ENST00000580095 DUOX2Q9NRD8 1548 aa14.02□□□□□ -0.16
TOP3A-209ENST00000580095 RNF123Q5XPI4 1314 aa14.02□□□□□ -0.16
TOP3A-209ENST00000580095 UNC13BO14795 1591 aa14.02□□□□□ -0.17
TOP3A-209ENST00000580095 RCAN3Q9UKA8 241 aa14.01□□□□□ -0.17
TOP3A-209ENST00000580095 FANCIQ9NVI1 1328 aa14.01□□□□□ -0.17
TOP3A-209ENST00000580095 ZCCHC11Q5TAX3 1644 aaKnown RBP14.01□□□□□ -0.17
TOP3A-209ENST00000580095 COL17A1Q9UMD9 1497 aaPredicted RBP14.01□□□□□ -0.17
TOP3A-209ENST00000580095 RIMBP3CA6NJZ7 1639 aa14□□□□□ -0.17
TOP3A-209ENST00000580095 RIMBP3BA6NNM3 1639 aa14□□□□□ -0.17
TOP3A-209ENST00000580095 RIMBP3Q9UFD9 1639 aa14□□□□□ -0.17
TOP3A-209ENST00000580095 MAST1Q9Y2H9 1570 aa14□□□□□ -0.17
TOP3A-209ENST00000580095 RRP1P56182 461 aaKnown RBP14□□□□□ -0.17
TOP3A-209ENST00000580095 SENP3Q9H4L4 574 aaPredicted RBP14□□□□□ -0.17
TOP3A-209ENST00000580095 IQGAP3Q86VI3 1631 aa13.99□□□□□ -0.17
TOP3A-209ENST00000580095 ADAMTS8Q9UP79 889 aa13.98□□□□□ -0.17
TOP3A-209ENST00000580095 SCAPERQ9BY12 1400 aa13.98□□□□□ -0.17
TOP3A-209ENST00000580095 SKAP1Q86WV1 359 aa13.98□□□□□ -0.17
TOP3A-209ENST00000580095 PLXNC1O60486 1568 aa13.98□□□□□ -0.17
TOP3A-209ENST00000580095 UBE2Q2Q8WVN8 375 aa13.97□□□□□ -0.17
TOP3A-209ENST00000580095 KNSTRNQ9Y448 316 aa13.97□□□□□ -0.17
TOP3A-209ENST00000580095 CFAP70Q5T0N1 1121 aa13.97□□□□□ -0.17
TOP3A-209ENST00000580095 ABCC1P33527 1531 aa13.97□□□□□ -0.17
TOP3A-209ENST00000580095 CHGAP10645 457 aaKnown RBP13.97□□□□□ -0.17
TOP3A-209ENST00000580095 PRDM15P57071 1507 aaPredicted RBP13.97□□□□□ -0.17
TOP3A-209ENST00000580095 E9PCH4 1651 aa13.96□□□□□ -0.17
TOP3A-209ENST00000580095 MAGI2Q86UL8 1455 aa13.95□□□□□ -0.18
TOP3A-209ENST00000580095 ATP10AO60312 1499 aa13.95□□□□□ -0.18
TOP3A-209ENST00000580095 ADGRF5Q8IZF2 1346 aa13.93□□□□□ -0.18
TOP3A-209ENST00000580095 PPP2R1AP30153 589 aa13.93□□□□□ -0.18
TOP3A-209ENST00000580095 CCDC146Q8IYE0 955 aa13.93□□□□□ -0.18
TOP3A-209ENST00000580095 UGGT1Q9NYU2 1555 aa13.93□□□□□ -0.18
TOP3A-209ENST00000580095 EIF5BO60841 1220 aaKnown RBP13.93□□□□□ -0.18
TOP3A-209ENST00000580095 FANCAO15360 1455 aa13.93□□□□□ -0.18
TOP3A-209ENST00000580095 PAK3O75914 559 aaPredicted RBP13.92□□□□□ -0.18
TOP3A-209ENST00000580095 AMER1Q5JTC6 1135 aaPredicted RBP13.92□□□□□ -0.18
TOP3A-209ENST00000580095 C20orf194Q5TEA3 1177 aa13.91□□□□□ -0.18
TOP3A-209ENST00000580095 WDR7Q9Y4E6 1490 aa13.91□□□□□ -0.18
TOP3A-209ENST00000580095 ZFYVE16Q7Z3T8 1539 aa13.91□□□□□ -0.18
TOP3A-209ENST00000580095 WDR43Q15061 677 aaKnown RBP eCLIP13.91□□□□□ -0.18
TOP3A-209ENST00000580095 NUTM2DQ5VT03 806 aaPredicted RBP13.91□□□□□ -0.18
TOP3A-209ENST00000580095 NPM2Q86SE8 214 aaKnown RBP13.91□□□□□ -0.18
TOP3A-209ENST00000580095 GGT6Q6P531 493 aa13.9□□□□□ -0.18
TOP3A-209ENST00000580095 KANK1Q14678 1352 aa13.89□□□□□ -0.19
TOP3A-209ENST00000580095 WASHC2CQ9Y4E1 1318 aa13.89□□□□□ -0.19
Retrieved 100 of 20,778 RNA–protein pairs in 52.6 ms