RNA–Protein interactions for RNA: ENST00000580003.1

SS18-214, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 2

Gene SS18, Length 609 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-214ENST00000580003 KCNK17Q96T54 332 aa15.28■□□□□ 0.04
SS18-214ENST00000580003 ARHGAP33O14559 1287 aa15.27■□□□□ 0.04
SS18-214ENST00000580003 RBM26Q5T8P6 1007 aaKnown RBP15.27■□□□□ 0.04
SS18-214ENST00000580003 NUTM2FA1L443 756 aa15.26■□□□□ 0.03
SS18-214ENST00000580003 TSR1Q2NL82 804 aaKnown RBP15.25■□□□□ 0.03
SS18-214ENST00000580003 DHX30Q7L2E3 1194 aaKnown RBP eCLIP15.25■□□□□ 0.03
SS18-214ENST00000580003 CDAN1Q8IWY9 1227 aa15.25■□□□□ 0.03
SS18-214ENST00000580003 AXIN2Q9Y2T1 843 aa15.25■□□□□ 0.03
SS18-214ENST00000580003 PSEN2P49810 448 aa15.23■□□□□ 0.03
SS18-214ENST00000580003 LMOD2Q6P5Q4 547 aa15.23■□□□□ 0.03
SS18-214ENST00000580003 POTEEQ6S8J3 1075 aa15.22■□□□□ 0.03
SS18-214ENST00000580003 PPP1R3GB7ZBB8 358 aa15.2■□□□□ 0.02
SS18-214ENST00000580003 CDHR5Q9HBB8 845 aa15.2■□□□□ 0.02
SS18-214ENST00000580003 GPIHBP1Q8IV16 184 aa15.19■□□□□ 0.02
SS18-214ENST00000580003 CERKQ8TCT0 537 aa15.19■□□□□ 0.02
SS18-214ENST00000580003 COL9A1P20849 921 aa15.17■□□□□ 0.02
SS18-214ENST00000580003 DMRTA1Q5VZB9 504 aa15.16■□□□□ 0.02
SS18-214ENST00000580003 PCDH10Q9P2E7 1040 aa15.16■□□□□ 0.02
SS18-214ENST00000580003 FCHSD2O94868 740 aa15.15■□□□□ 0.02
SS18-214ENST00000580003 LSM11P83369 360 aaKnown RBP eCLIP15.15■□□□□ 0.02
SS18-214ENST00000580003 PTGDRQ13258 359 aa15.13■□□□□ 0.01
SS18-214ENST00000580003 KRTAP3-3Q9BYR6 98 aa15.13■□□□□ 0.01
SS18-214ENST00000580003 KRTAP3-2Q9BYR7 98 aa15.13■□□□□ 0.01
SS18-214ENST00000580003 ANKRD13DQ6ZTN6 518 aa15.12■□□□□ 0.01
SS18-214ENST00000580003 ZBED2Q9BTP6 218 aa15.11■□□□□ 0.01
SS18-214ENST00000580003 NPDC1Q9NQX5 325 aaPredicted RBP15.11■□□□□ 0.01
SS18-214ENST00000580003 SLC4A5Q9BY07 1137 aa15.1■□□□□ 0.01
SS18-214ENST00000580003 TK2O00142 265 aa15.08■□□□□ 0
SS18-214ENST00000580003 PRSS12P56730 875 aa15.08■□□□□ 0
SS18-214ENST00000580003 HIC1Q14526 733 aa15.08■□□□□ 0
SS18-214ENST00000580003 CDCA7LQ96GN5 454 aa15.08■□□□□ 0
SS18-214ENST00000580003 PROX2Q3B8N5 592 aa15.06■□□□□ 0
SS18-214ENST00000580003 RBM27Q9P2N5 1060 aaKnown RBP15.06■□□□□ 0
SS18-214ENST00000580003 TRIM6-TRIM34B2RNG4 842 aa15.05■□□□□ -0
SS18-214ENST00000580003 ADGRD1Q6QNK2 874 aa15.05■□□□□ -0
SS18-214ENST00000580003 VPS9D1Q9Y2B5 631 aa15.05■□□□□ -0
SS18-214ENST00000580003 GNPATO15228 680 aa15.04■□□□□ -0
SS18-214ENST00000580003 GPR37O15354 613 aa15.04■□□□□ -0
SS18-214ENST00000580003 ONECUT3O60422 494 aaPredicted RBP15.03■□□□□ -0
SS18-214ENST00000580003 PADI6Q6TGC4 694 aa15.02■□□□□ -0
SS18-214ENST00000580003 ZC3H15Q8WU90 426 aaKnown RBP15.02■□□□□ -0
SS18-214ENST00000580003 PACS2Q86VP3 889 aa15.01□□□□□ -0.01
SS18-214ENST00000580003 STAC3Q96MF2 364 aa15□□□□□ -0.01
SS18-214ENST00000580003 KIAA1468Q9P260 1216 aa15□□□□□ -0.01
SS18-214ENST00000580003 RABGEF1Q9UJ41 708 aa15□□□□□ -0.01
SS18-214ENST00000580003 TSKSQ9UJT2 592 aa15□□□□□ -0.01
SS18-214ENST00000580003 NBPF3Q9H094 633 aa14.97□□□□□ -0.01
SS18-214ENST00000580003 TTC13Q8NBP0 860 aa14.96□□□□□ -0.01
SS18-214ENST00000580003 FAM198AQ9UFP1 575 aa14.96□□□□□ -0.01
SS18-214ENST00000580003 NBPF26B4DH59 902 aa14.95□□□□□ -0.02
SS18-214ENST00000580003 FECHP22830 423 aa14.94□□□□□ -0.02
SS18-214ENST00000580003 HRO43593 1189 aa14.93□□□□□ -0.02
SS18-214ENST00000580003 ZMYND10O75800 440 aa14.93□□□□□ -0.02
SS18-214ENST00000580003 KRI1Q8N9T8 703 aaKnown RBP14.92□□□□□ -0.02
SS18-214ENST00000580003 PNMA3Q9UL41 463 aa14.92□□□□□ -0.02
SS18-214ENST00000580003 BARGINQ6ZT62 677 aa14.91□□□□□ -0.02
SS18-214ENST00000580003 MRPL50Q8N5N7 158 aaKnown RBP14.91□□□□□ -0.02
SS18-214ENST00000580003 TATDN2Q93075 761 aa14.91□□□□□ -0.02
SS18-214ENST00000580003 BHMG1C9JSJ3 638 aaPredicted RBP14.9□□□□□ -0.02
SS18-214ENST00000580003 MAP2K5Q13163 448 aa14.9□□□□□ -0.02
SS18-214ENST00000580003 NUDT18Q6ZVK8 323 aa14.9□□□□□ -0.02
SS18-214ENST00000580003 SEPT9Q9UHD8 586 aaPredicted RBP14.89□□□□□ -0.03
SS18-214ENST00000580003 RBM46Q8TBY0 533 aaKnown RBP14.88□□□□□ -0.03
SS18-214ENST00000580003 ADGRG1Q9Y653 693 aa14.88□□□□□ -0.03
SS18-214ENST00000580003 MINK1Q8N4C8 1332 aaPredicted RBP14.88□□□□□ -0.03
SS18-214ENST00000580003 GOLGA8CPA6NN73 597 aa14.87□□□□□ -0.03
SS18-214ENST00000580003 OATP04181 439 aa14.87□□□□□ -0.03
SS18-214ENST00000580003 LAPTM4BQ86VI4 370 aa14.87□□□□□ -0.03
SS18-214ENST00000580003 SMAPO00193 183 aa14.86□□□□□ -0.03
SS18-214ENST00000580003 FAM161AQ3B820 660 aa14.86□□□□□ -0.03
SS18-214ENST00000580003 TPRNQ4KMQ1 711 aa14.86□□□□□ -0.03
SS18-214ENST00000580003 IRF6O14896 467 aa14.84□□□□□ -0.03
SS18-214ENST00000580003 FAM98CQ17RN3 349 aaKnown RBP14.84□□□□□ -0.03
SS18-214ENST00000580003 SPNS2Q8IVW8 549 aa14.84□□□□□ -0.03
SS18-214ENST00000580003 C3orf80F5H4A9 247 aa14.83□□□□□ -0.04
SS18-214ENST00000580003 EYA1Q99502 592 aa14.82□□□□□ -0.04
SS18-214ENST00000580003 MYT1LQ9UL68 1186 aa14.81□□□□□ -0.04
SS18-214ENST00000580003 CCDC102AQ96A19 550 aa14.8□□□□□ -0.04
SS18-214ENST00000580003 METTL3Q86U44 580 aaKnown RBP14.79□□□□□ -0.04
SS18-214ENST00000580003 PXYLP1Q8TE99 480 aa14.79□□□□□ -0.04
SS18-214ENST00000580003 HDGFP51858 240 aaKnown RBP14.78□□□□□ -0.04
SS18-214ENST00000580003 ZFRQ96KR1 1074 aaKnown RBP14.78□□□□□ -0.04
SS18-214ENST00000580003 DNAJB2P25686 324 aa14.76□□□□□ -0.05
SS18-214ENST00000580003 ANKK1Q8NFD2 765 aa14.76□□□□□ -0.05
SS18-214ENST00000580003 SLC24A3Q9HC58 644 aa14.76□□□□□ -0.05
SS18-214ENST00000580003 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP14.75□□□□□ -0.05
SS18-214ENST00000580003 RCCD1A6NED2 376 aa14.75□□□□□ -0.05
SS18-214ENST00000580003 WNT2BQ93097 391 aa14.75□□□□□ -0.05
SS18-214ENST00000580003 AK7Q96M32 723 aa14.75□□□□□ -0.05
SS18-214ENST00000580003 KCTD12Q96CX2 325 aaKnown RBP14.72□□□□□ -0.05
SS18-214ENST00000580003 SLC4A3P48751 1232 aa14.7□□□□□ -0.06
SS18-214ENST00000580003 SAMD7Q7Z3H4 446 aa14.7□□□□□ -0.06
SS18-214ENST00000580003 RNF166Q96A37 237 aaPredicted RBP14.7□□□□□ -0.06
SS18-214ENST00000580003 LRCH3Q96II8 777 aa14.7□□□□□ -0.06
SS18-214ENST00000580003 PHOX2BQ99453 314 aa14.69□□□□□ -0.06
SS18-214ENST00000580003 TMEM134Q9H6X4 195 aa14.69□□□□□ -0.06
SS18-214ENST00000580003 CDKN2AIPQ9NXV6 580 aaPredicted RBP14.69□□□□□ -0.06
SS18-214ENST00000580003 SWT1Q5T5J6 900 aaKnown RBP14.68□□□□□ -0.06
SS18-214ENST00000580003 PRKCSHP14314 528 aaPredicted RBP14.67□□□□□ -0.06
SS18-214ENST00000580003 MMRN1Q13201 1228 aa14.67□□□□□ -0.06
Retrieved 100 of 20,778 RNA–protein pairs in 107 ms