RNA–Protein interactions for RNA: ENST00000577300.1

SMCHD1-202, Transcript of structural maintenance of chromosomes flexible hinge domain containing 1, humanhuman

TSL 3

Gene SMCHD1, Length 506 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMCHD1-202ENST00000577300 PPP1R3GB7ZBB8 358 aa13.63□□□□□ -0.23
SMCHD1-202ENST00000577300 STAC3Q96MF2 364 aa13.63□□□□□ -0.23
SMCHD1-202ENST00000577300 DDX12PQ92771 950 aa13.61□□□□□ -0.23
SMCHD1-202ENST00000577300 BHMG1C9JSJ3 638 aaPredicted RBP13.6□□□□□ -0.23
SMCHD1-202ENST00000577300 COL9A1P20849 921 aa13.57□□□□□ -0.24
SMCHD1-202ENST00000577300 C6orf132Q5T0Z8 1188 aa13.57□□□□□ -0.24
SMCHD1-202ENST00000577300 HCSTQ9UBK5 93 aa13.56□□□□□ -0.24
SMCHD1-202ENST00000577300 NBR1Q14596 966 aa13.55□□□□□ -0.24
SMCHD1-202ENST00000577300 EN1Q05925 392 aaPredicted RBP13.54□□□□□ -0.24
SMCHD1-202ENST00000577300 KCTD12Q96CX2 325 aaKnown RBP13.53□□□□□ -0.24
SMCHD1-202ENST00000577300 RBM33Q96EV2 1170 aaKnown RBP13.53□□□□□ -0.24
SMCHD1-202ENST00000577300 NBPF3Q9H094 633 aa13.53□□□□□ -0.24
SMCHD1-202ENST00000577300 PROX2Q3B8N5 592 aa13.52□□□□□ -0.25
SMCHD1-202ENST00000577300 RABGEF1Q9UJ41 708 aa13.52□□□□□ -0.25
SMCHD1-202ENST00000577300 ONECUT3O60422 494 aaPredicted RBP13.51□□□□□ -0.25
SMCHD1-202ENST00000577300 MRPL50Q8N5N7 158 aaKnown RBP13.51□□□□□ -0.25
SMCHD1-202ENST00000577300 PLCB2Q00722 1185 aa13.5□□□□□ -0.25
SMCHD1-202ENST00000577300 MAP3K7O43318 606 aa13.48□□□□□ -0.25
SMCHD1-202ENST00000577300 GRXCR2A6NFK2 248 aa13.47□□□□□ -0.25
SMCHD1-202ENST00000577300 ARHGEF1Q92888 912 aaKnown RBP13.47□□□□□ -0.25
SMCHD1-202ENST00000577300 GOLGA8CPA6NN73 597 aa13.46□□□□□ -0.25
SMCHD1-202ENST00000577300 TSR1Q2NL82 804 aaKnown RBP13.45□□□□□ -0.26
SMCHD1-202ENST00000577300 TRIM6-TRIM34B2RNG4 842 aa13.44□□□□□ -0.26
SMCHD1-202ENST00000577300 KCNV2Q8TDN2 545 aa13.44□□□□□ -0.26
SMCHD1-202ENST00000577300 PRIM1P49642 420 aaKnown RBP13.43□□□□□ -0.26
SMCHD1-202ENST00000577300 THSD4Q6ZMP0 1018 aa13.43□□□□□ -0.26
SMCHD1-202ENST00000577300 LAPTM4BQ86VI4 370 aa13.43□□□□□ -0.26
SMCHD1-202ENST00000577300 WNT2BQ93097 391 aa13.43□□□□□ -0.26
SMCHD1-202ENST00000577300 KIAA1468Q9P260 1216 aa13.43□□□□□ -0.26
SMCHD1-202ENST00000577300 OSBPP22059 807 aa13.42□□□□□ -0.26
SMCHD1-202ENST00000577300 CERKQ8TCT0 537 aa13.4□□□□□ -0.26
SMCHD1-202ENST00000577300 P3H3Q8IVL6 736 aa13.39□□□□□ -0.27
SMCHD1-202ENST00000577300 PTPN5P54829 565 aa13.38□□□□□ -0.27
SMCHD1-202ENST00000577300 TSKSQ9UJT2 592 aa13.36□□□□□ -0.27
SMCHD1-202ENST00000577300 ANKK1Q8NFD2 765 aa13.35□□□□□ -0.27
SMCHD1-202ENST00000577300 PLA2G2EQ9NZK7 142 aa13.35□□□□□ -0.27
SMCHD1-202ENST00000577300 PRSS12P56730 875 aa13.34□□□□□ -0.27
SMCHD1-202ENST00000577300 PACS2Q86VP3 889 aa13.34□□□□□ -0.27
SMCHD1-202ENST00000577300 CDCA7LQ96GN5 454 aa13.34□□□□□ -0.27
SMCHD1-202ENST00000577300 FAM98CQ17RN3 349 aaKnown RBP13.33□□□□□ -0.28
SMCHD1-202ENST00000577300 ZFRQ96KR1 1074 aaKnown RBP13.33□□□□□ -0.28
SMCHD1-202ENST00000577300 SEPT9Q9UHD8 586 aaPredicted RBP13.33□□□□□ -0.28
SMCHD1-202ENST00000577300 CDHR5Q9HBB8 845 aa13.32□□□□□ -0.28
SMCHD1-202ENST00000577300 SOWAHBA6NEL2 793 aa13.3□□□□□ -0.28
SMCHD1-202ENST00000577300 MLLT3P42568 568 aaPredicted RBP13.3□□□□□ -0.28
SMCHD1-202ENST00000577300 RBM27Q9P2N5 1060 aaKnown RBP13.3□□□□□ -0.28
SMCHD1-202ENST00000577300 FAM198AQ9UFP1 575 aa13.28□□□□□ -0.28
SMCHD1-202ENST00000577300 BCAMP50895 628 aa13.26□□□□□ -0.29
SMCHD1-202ENST00000577300 HAP1P54257 671 aaPredicted RBP13.26□□□□□ -0.29
SMCHD1-202ENST00000577300 NPDC1Q9NQX5 325 aaPredicted RBP13.26□□□□□ -0.29
SMCHD1-202ENST00000577300 NBPF26B4DH59 902 aa13.24□□□□□ -0.29
SMCHD1-202ENST00000577300 TTC13Q8NBP0 860 aa13.23□□□□□ -0.29
SMCHD1-202ENST00000577300 TATDN2Q93075 761 aa13.23□□□□□ -0.29
SMCHD1-202ENST00000577300 IFFO2Q5TF58 517 aa13.21□□□□□ -0.29
SMCHD1-202ENST00000577300 NYAP1Q6ZVC0 841 aa13.21□□□□□ -0.29
SMCHD1-202ENST00000577300 LRCH3Q96II8 777 aa13.21□□□□□ -0.29
SMCHD1-202ENST00000577300 CDKN2AIPQ9NXV6 580 aaPredicted RBP13.21□□□□□ -0.29
SMCHD1-202ENST00000577300 PNMA3Q9UL41 463 aa13.21□□□□□ -0.29
SMCHD1-202ENST00000577300 C3orf80F5H4A9 247 aa13.2□□□□□ -0.3
SMCHD1-202ENST00000577300 SMAPO00193 183 aa13.2□□□□□ -0.3
SMCHD1-202ENST00000577300 SEMA3EO15041 775 aa13.19□□□□□ -0.3
SMCHD1-202ENST00000577300 PADI6Q6TGC4 694 aa13.18□□□□□ -0.3
SMCHD1-202ENST00000577300 NUDT18Q6ZVK8 323 aa13.17□□□□□ -0.3
SMCHD1-202ENST00000577300 WBP1LQ9NX94 342 aa13.17□□□□□ -0.3
SMCHD1-202ENST00000577300 TSR3Q9UJK0 312 aaKnown RBP13.17□□□□□ -0.3
SMCHD1-202ENST00000577300 PTGDRQ13258 359 aa13.16□□□□□ -0.3
SMCHD1-202ENST00000577300 HPS5Q9UPZ3 1129 aa13.15□□□□□ -0.3
SMCHD1-202ENST00000577300 KDM2AQ9Y2K7 1162 aa13.15□□□□□ -0.3
SMCHD1-202ENST00000577300 SAMD7Q7Z3H4 446 aa13.14□□□□□ -0.31
SMCHD1-202ENST00000577300 TESPA1A2RU30 521 aaPredicted RBP13.13□□□□□ -0.31
SMCHD1-202ENST00000577300 ITGBL1O95965 494 aaPredicted RBP13.12□□□□□ -0.31
SMCHD1-202ENST00000577300 NUTM2FA1L443 756 aa13.1□□□□□ -0.31
SMCHD1-202ENST00000577300 HDGFP51858 240 aaKnown RBP13.09□□□□□ -0.31
SMCHD1-202ENST00000577300 PPP4CP60510 307 aa13.09□□□□□ -0.31
SMCHD1-202ENST00000577300 SMYD5Q6GMV2 418 aa13.09□□□□□ -0.31
SMCHD1-202ENST00000577300 VSIG10Q8N0Z9 540 aa13.09□□□□□ -0.31
SMCHD1-202ENST00000577300 EYA1Q99502 592 aa13.08□□□□□ -0.32
SMCHD1-202ENST00000577300 FCHSD2O94868 740 aa13.06□□□□□ -0.32
SMCHD1-202ENST00000577300 A0A0G2JS52 829 aa13.04□□□□□ -0.32
SMCHD1-202ENST00000577300 SWT1Q5T5J6 900 aaKnown RBP13.02□□□□□ -0.33
SMCHD1-202ENST00000577300 KCNC4Q03721 635 aa13.01□□□□□ -0.33
SMCHD1-202ENST00000577300 RBM26Q5T8P6 1007 aaKnown RBP13.01□□□□□ -0.33
SMCHD1-202ENST00000577300 RBM46Q8TBY0 533 aaKnown RBP13.01□□□□□ -0.33
SMCHD1-202ENST00000577300 NECTIN2Q92692 538 aa13.01□□□□□ -0.33
SMCHD1-202ENST00000577300 ADGRG1Q9Y653 693 aa13.01□□□□□ -0.33
SMCHD1-202ENST00000577300 RGS20O76081 388 aa13□□□□□ -0.33
SMCHD1-202ENST00000577300 SLF2Q8IX21 1173 aa13□□□□□ -0.33
SMCHD1-202ENST00000577300 HIC1Q14526 733 aa12.99□□□□□ -0.33
SMCHD1-202ENST00000577300 RNF40O75150 1001 aa12.98□□□□□ -0.33
SMCHD1-202ENST00000577300 DNAJB2P25686 324 aa12.97□□□□□ -0.33
SMCHD1-202ENST00000577300 SLC4A3P48751 1232 aa12.96□□□□□ -0.33
SMCHD1-202ENST00000577300 TJAP1Q5JTD0 557 aa12.94□□□□□ -0.34
SMCHD1-202ENST00000577300 TMEM134Q9H6X4 195 aa12.94□□□□□ -0.34
SMCHD1-202ENST00000577300 GPR37O15354 613 aa12.93□□□□□ -0.34
SMCHD1-202ENST00000577300 APLP1P51693 650 aa12.93□□□□□ -0.34
SMCHD1-202ENST00000577300 RCCD1A6NED2 376 aa12.92□□□□□ -0.34
SMCHD1-202ENST00000577300 GNPATO15228 680 aa12.92□□□□□ -0.34
SMCHD1-202ENST00000577300 FAM161AQ3B820 660 aa12.92□□□□□ -0.34
SMCHD1-202ENST00000577300 OATP04181 439 aa12.91□□□□□ -0.34
SMCHD1-202ENST00000577300 MTRQ99707 1265 aa12.91□□□□□ -0.34
Retrieved 100 of 20,778 RNA–protein pairs in 10.6 ms