RNA–Protein interactions for RNA: ENST00000575100.1

VPS53-217, Transcript of VPS53, GARP complex subunit, humanhuman

Gene VPS53, Length 1,972 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-217ENST00000575100 CEP162Q5TB80 1403 aa10.35□□□□□ -0.75
VPS53-217ENST00000575100 AEBP1Q8IUX7 1158 aa10.35□□□□□ -0.75
VPS53-217ENST00000575100 CD109Q6YHK3 1445 aa10.35□□□□□ -0.75
VPS53-217ENST00000575100 FLIIQ13045 1269 aa10.34□□□□□ -0.75
VPS53-217ENST00000575100 SEMA3EO15041 775 aa10.34□□□□□ -0.75
VPS53-217ENST00000575100 AK7Q96M32 723 aa10.33□□□□□ -0.76
VPS53-217ENST00000575100 ARAP3Q8WWN8 1544 aa10.33□□□□□ -0.76
VPS53-217ENST00000575100 ABCA9Q8IUA7 1624 aa10.32□□□□□ -0.76
VPS53-217ENST00000575100 ILDR1Q86SU0 546 aaPredicted RBP10.32□□□□□ -0.76
VPS53-217ENST00000575100 TRAK2O60296 914 aa10.31□□□□□ -0.76
VPS53-217ENST00000575100 SAMD9Q5K651 1589 aa10.31□□□□□ -0.76
VPS53-217ENST00000575100 A6NJR5 290 aa10.3□□□□□ -0.76
VPS53-217ENST00000575100 CLIP1P30622 1438 aa10.3□□□□□ -0.76
VPS53-217ENST00000575100 ONECUT3O60422 494 aaPredicted RBP10.29□□□□□ -0.76
VPS53-217ENST00000575100 ZBTB47Q9UFB7 747 aaPredicted RBP10.29□□□□□ -0.76
VPS53-217ENST00000575100 ATP10BO94823 1461 aa10.28□□□□□ -0.76
VPS53-217ENST00000575100 PHLDB1Q86UU1 1377 aa10.28□□□□□ -0.76
VPS53-217ENST00000575100 ARHGAP35Q9NRY4 1499 aa10.28□□□□□ -0.76
VPS53-217ENST00000575100 ADAMTSL3P82987 1691 aa10.28□□□□□ -0.76
VPS53-217ENST00000575100 RAPGEF6Q8TEU7 1601 aa10.27□□□□□ -0.77
VPS53-217ENST00000575100 GZF1Q9H116 711 aaPredicted RBP10.27□□□□□ -0.77
VPS53-217ENST00000575100 E9PSI1 815 aa10.26□□□□□ -0.77
VPS53-217ENST00000575100 VGFO15240 615 aaPredicted RBP10.26□□□□□ -0.77
VPS53-217ENST00000575100 KCNH8Q96L42 1107 aa10.26□□□□□ -0.77
VPS53-217ENST00000575100 NEO1Q92859 1461 aa10.25□□□□□ -0.77
VPS53-217ENST00000575100 FRMPD1Q5SYB0 1578 aa10.25□□□□□ -0.77
VPS53-217ENST00000575100 BCORL1Q5H9F3 1711 aa10.24□□□□□ -0.77
VPS53-217ENST00000575100 CLUAP1Q96AJ1 413 aa10.23□□□□□ -0.77
VPS53-217ENST00000575100 GSE1Q14687 1217 aa10.23□□□□□ -0.77
VPS53-217ENST00000575100 SPINK5Q9NQ38 1064 aaPredicted RBP10.23□□□□□ -0.77
VPS53-217ENST00000575100 FHOD3Q2V2M9 1422 aa10.22□□□□□ -0.77
VPS53-217ENST00000575100 SGIP1Q9BQI5 828 aa10.21□□□□□ -0.77
VPS53-217ENST00000575100 PTPRMP28827 1452 aa10.21□□□□□ -0.78
VPS53-217ENST00000575100 NUP153P49790 1475 aaKnown RBP10.21□□□□□ -0.78
VPS53-217ENST00000575100 RICTORQ6R327 1708 aa10.21□□□□□ -0.78
VPS53-217ENST00000575100 ARHGEF40Q8TER5 1519 aa10.2□□□□□ -0.78
VPS53-217ENST00000575100 PDE4DQ08499 809 aa10.2□□□□□ -0.78
VPS53-217ENST00000575100 BCL11BQ9C0K0 894 aaPredicted RBP10.2□□□□□ -0.78
VPS53-217ENST00000575100 CFAP74Q9C0B2 1584 aa10.2□□□□□ -0.78
VPS53-217ENST00000575100 EFCAB5A4FU69 1503 aa10.2□□□□□ -0.78
VPS53-217ENST00000575100 MADDQ8WXG6 1647 aa10.19□□□□□ -0.78
VPS53-217ENST00000575100 FAM117AQ9C073 453 aa10.19□□□□□ -0.78
VPS53-217ENST00000575100 STK24Q9Y6E0 443 aa10.19□□□□□ -0.78
VPS53-217ENST00000575100 TRIM66O15016 1216 aa10.18□□□□□ -0.78
VPS53-217ENST00000575100 VPS8Q8N3P4 1428 aa10.18□□□□□ -0.78
VPS53-217ENST00000575100 RETREG2Q8NC44 543 aa10.17□□□□□ -0.78
VPS53-217ENST00000575100 ZMYM4Q5VZL5 1548 aa10.17□□□□□ -0.78
VPS53-217ENST00000575100 ZNF316A6NFI3 1004 aaPredicted RBP10.17□□□□□ -0.78
VPS53-217ENST00000575100 IRF5Q13568 498 aa10.17□□□□□ -0.78
VPS53-217ENST00000575100 E2F4Q16254 413 aa10.16□□□□□ -0.78
VPS53-217ENST00000575100 SMYD5Q6GMV2 418 aa10.16□□□□□ -0.78
VPS53-217ENST00000575100 PCF11O94913 1555 aaKnown RBP10.16□□□□□ -0.78
VPS53-217ENST00000575100 RAPGEF3O95398 923 aa10.15□□□□□ -0.78
VPS53-217ENST00000575100 RIMS1Q86UR5 1692 aaKnown RBP10.15□□□□□ -0.78
VPS53-217ENST00000575100 PLEKHG3A1L390 1219 aa10.15□□□□□ -0.78
VPS53-217ENST00000575100 USP35Q9P2H5 1018 aa10.15□□□□□ -0.78
VPS53-217ENST00000575100 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP10.15□□□□□ -0.79
VPS53-217ENST00000575100 DENND4BO75064 1496 aaPredicted RBP10.15□□□□□ -0.79
VPS53-217ENST00000575100 PPARGC1BQ86YN6 1023 aaKnown RBP10.14□□□□□ -0.79
VPS53-217ENST00000575100 SERPINA10Q9UK55 444 aa10.14□□□□□ -0.79
VPS53-217ENST00000575100 LMTK3Q96Q04 1460 aa10.14□□□□□ -0.79
VPS53-217ENST00000575100 TTC37Q6PGP7 1564 aa10.14□□□□□ -0.79
VPS53-217ENST00000575100 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP10.14□□□□□ -0.79
VPS53-217ENST00000575100 ZFP91Q96JP5 570 aaPredicted RBP10.14□□□□□ -0.79
VPS53-217ENST00000575100 AKNAQ7Z591 1439 aa10.13□□□□□ -0.79
VPS53-217ENST00000575100 SIGLEC1Q9BZZ2 1709 aa10.13□□□□□ -0.79
VPS53-217ENST00000575100 RSPH4AQ5TD94 716 aa10.13□□□□□ -0.79
VPS53-217ENST00000575100 FBXO41Q8TF61 875 aa10.13□□□□□ -0.79
VPS53-217ENST00000575100 FANCAO15360 1455 aa10.12□□□□□ -0.79
VPS53-217ENST00000575100 FBXW7Q969H0 707 aa10.12□□□□□ -0.79
VPS53-217ENST00000575100 ZFYVE16Q7Z3T8 1539 aa10.11□□□□□ -0.79
VPS53-217ENST00000575100 MAGI2Q86UL8 1455 aa10.11□□□□□ -0.79
VPS53-217ENST00000575100 FAM177A1Q8N128 213 aaPredicted RBP10.11□□□□□ -0.79
VPS53-217ENST00000575100 KRI1Q8N9T8 703 aaKnown RBP10.11□□□□□ -0.79
VPS53-217ENST00000575100 ZNF777Q9ULD5 760 aaPredicted RBP10.1□□□□□ -0.79
VPS53-217ENST00000575100 FMN1Q68DA7 1419 aa10.1□□□□□ -0.79
VPS53-217ENST00000575100 PLEKHD1A6NEE1 506 aa10.1□□□□□ -0.79
VPS53-217ENST00000575100 FER1L4A9Z1Z3 1794 aa10.1□□□□□ -0.79
VPS53-217ENST00000575100 HECW1Q76N89 1606 aa10.1□□□□□ -0.79
VPS53-217ENST00000575100 CCDC97Q96F63 343 aaPredicted RBP10.09□□□□□ -0.79
VPS53-217ENST00000575100 AMOTL2Q9Y2J4 779 aa10.09□□□□□ -0.79
VPS53-217ENST00000575100 POGZQ7Z3K3 1410 aa10.09□□□□□ -0.79
VPS53-217ENST00000575100 CASKIN1Q8WXD9 1431 aa10.09□□□□□ -0.79
VPS53-217ENST00000575100 ATP1B4Q9UN42 357 aaPredicted RBP10.08□□□□□ -0.8
VPS53-217ENST00000575100 LRRIQ1Q96JM4 1722 aa10.08□□□□□ -0.8
VPS53-217ENST00000575100 MYO5CQ9NQX4 1742 aa10.08□□□□□ -0.8
VPS53-217ENST00000575100 BRD2P25440 801 aaKnown RBP10.08□□□□□ -0.8
VPS53-217ENST00000575100 ARID4BQ4LE39 1312 aaPredicted RBP10.08□□□□□ -0.8
VPS53-217ENST00000575100 CDK13Q14004 1512 aaKnown RBP10.07□□□□□ -0.8
VPS53-217ENST00000575100 DDRGK1Q96HY6 314 aa10.07□□□□□ -0.8
VPS53-217ENST00000575100 PLCH2O75038 1416 aa10.07□□□□□ -0.8
VPS53-217ENST00000575100 YEATS2Q9ULM3 1422 aa10.07□□□□□ -0.8
VPS53-217ENST00000575100 FYCO1Q9BQS8 1478 aa10.07□□□□□ -0.8
VPS53-217ENST00000575100 CAPN15O75808 1086 aa10.06□□□□□ -0.8
VPS53-217ENST00000575100 KANK4Q5T7N3 995 aaPredicted RBP10.06□□□□□ -0.8
VPS53-217ENST00000575100 DHX37Q8IY37 1157 aaKnown RBP10.06□□□□□ -0.8
VPS53-217ENST00000575100 FNBP4Q8N3X1 1017 aaPredicted RBP10.06□□□□□ -0.8
VPS53-217ENST00000575100 NUBP1P53384 320 aa10.06□□□□□ -0.8
VPS53-217ENST00000575100 ARHGEF12Q9NZN5 1544 aa10.06□□□□□ -0.8
VPS53-217ENST00000575100 PROSER2Q86WR7 435 aaPredicted RBP10.05□□□□□ -0.8
Retrieved 100 of 20,778 RNA–protein pairs in 18.3 ms