RNA–Protein interactions for RNA: ENST00000574501.1

SMG6-215, Transcript of SMG6, nonsense mediated mRNA decay factor, humanhuman

Gene SMG6, Length 2,419 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMG6-215ENST00000574501 IFT140Q96RY7 1462 aa18.86■□□□□ 0.61
SMG6-215ENST00000574501 KDM2BQ8NHM5 1336 aa18.86■□□□□ 0.61
SMG6-215ENST00000574501 TARBP1Q13395 1621 aaKnown RBP18.85■□□□□ 0.61
SMG6-215ENST00000574501 KTN1Q86UP2 1357 aaKnown RBP18.84■□□□□ 0.61
SMG6-215ENST00000574501 RGS3P49796 1198 aa18.83■□□□□ 0.6
SMG6-215ENST00000574501 KIAA1107Q9UPP5 1409 aa18.82■□□□□ 0.6
SMG6-215ENST00000574501 CENPQQ7L2Z9 268 aaPredicted RBP18.81■□□□□ 0.6
SMG6-215ENST00000574501 ZNF608Q9ULD9 1512 aaPredicted RBP18.81■□□□□ 0.6
SMG6-215ENST00000574501 POGKQ9P215 609 aa18.8■□□□□ 0.6
SMG6-215ENST00000574501 DNMT1P26358 1616 aaKnown RBP18.8■□□□□ 0.6
SMG6-215ENST00000574501 CC2D1BQ5T0F9 858 aaKnown RBP18.8■□□□□ 0.6
SMG6-215ENST00000574501 PARD3Q8TEW0 1356 aa18.79■□□□□ 0.6
SMG6-215ENST00000574501 RALGAPBQ86X10 1494 aa18.79■□□□□ 0.6
SMG6-215ENST00000574501 RRAGDQ9NQL2 400 aaPredicted RBP18.78■□□□□ 0.6
SMG6-215ENST00000574501 GAPVD1Q14C86 1478 aa18.77■□□□□ 0.59
SMG6-215ENST00000574501 UHRF1BP1Q6BDS2 1440 aa18.76■□□□□ 0.59
SMG6-215ENST00000574501 E9PCH4 1651 aa18.73■□□□□ 0.59
SMG6-215ENST00000574501 PER1O15534 1290 aaPredicted RBP18.73■□□□□ 0.59
SMG6-215ENST00000574501 ARXQ96QS3 562 aa18.73■□□□□ 0.59
SMG6-215ENST00000574501 PKNOX2Q96KN3 472 aa18.71■□□□□ 0.59
SMG6-215ENST00000574501 ZNF777Q9ULD5 760 aaPredicted RBP18.71■□□□□ 0.59
SMG6-215ENST00000574501 BLMP54132 1417 aaPredicted RBP18.71■□□□□ 0.59
SMG6-215ENST00000574501 SLKQ9H2G2 1235 aaPredicted RBP18.7■□□□□ 0.58
SMG6-215ENST00000574501 ADAMTS8Q9UP79 889 aa18.69■□□□□ 0.58
SMG6-215ENST00000574501 EIF4G3O43432 1585 aaKnown RBP18.68■□□□□ 0.58
SMG6-215ENST00000574501 DUSP27Q5VZP5 1158 aa18.67■□□□□ 0.58
SMG6-215ENST00000574501 KIAA0586Q9BVV6 1533 aa18.67■□□□□ 0.58
SMG6-215ENST00000574501 ZMYM4Q5VZL5 1548 aa18.66■□□□□ 0.58
SMG6-215ENST00000574501 CFDP1Q9UEE9 299 aaPredicted RBP18.66■□□□□ 0.58
SMG6-215ENST00000574501 SEC24BO95487 1268 aa18.65■□□□□ 0.58
SMG6-215ENST00000574501 USP19O94966 1318 aa18.65■□□□□ 0.58
SMG6-215ENST00000574501 PANK3Q9H999 370 aa18.65■□□□□ 0.58
SMG6-215ENST00000574501 NUP155O75694 1391 aa18.65■□□□□ 0.58
SMG6-215ENST00000574501 PLEKHH1Q9ULM0 1364 aa18.64■□□□□ 0.57
SMG6-215ENST00000574501 L1TD1Q5T7N2 865 aaKnown RBP18.63■□□□□ 0.57
SMG6-215ENST00000574501 NAP1L5Q96NT1 182 aaPredicted RBP18.63■□□□□ 0.57
SMG6-215ENST00000574501 CAMSAP2Q08AD1 1489 aa18.62■□□□□ 0.57
SMG6-215ENST00000574501 NBPF1Q3BBV0 1214 aa18.62■□□□□ 0.57
SMG6-215ENST00000574501 GOLGA6L2Q8N9W4 650 aaPredicted RBP18.62■□□□□ 0.57
SMG6-215ENST00000574501 PLEKHH2Q8IVE3 1493 aa18.61■□□□□ 0.57
SMG6-215ENST00000574501 ARHGEF12Q9NZN5 1544 aa18.61■□□□□ 0.57
SMG6-215ENST00000574501 ANKRD50Q9ULJ7 1429 aa18.61■□□□□ 0.57
SMG6-215ENST00000574501 GLIPR1L2Q4G1C9 344 aa18.6■□□□□ 0.57
SMG6-215ENST00000574501 VSIG10Q8N0Z9 540 aa18.6■□□□□ 0.57
SMG6-215ENST00000574501 PBRM1Q86U86 1689 aa18.6■□□□□ 0.57
SMG6-215ENST00000574501 IGHDP01880 384 aa18.6■□□□□ 0.57
SMG6-215ENST00000574501 IQGAP2Q13576 1575 aa18.6■□□□□ 0.57
SMG6-215ENST00000574501 GOLGA2Q08379 1002 aa18.59■□□□□ 0.57
SMG6-215ENST00000574501 BECN1Q14457 450 aa18.59■□□□□ 0.57
SMG6-215ENST00000574501 INSRP06213 1382 aa18.58■□□□□ 0.57
SMG6-215ENST00000574501 ANKRD30AQ9BXX3 1397 aa18.58■□□□□ 0.57
SMG6-215ENST00000574501 DISP3Q9P2K9 1392 aa18.58■□□□□ 0.56
SMG6-215ENST00000574501 XRCC6P12956 609 aaKnown RBP eCLIP18.58■□□□□ 0.56
SMG6-215ENST00000574501 FBLN2P98095 1184 aa18.58■□□□□ 0.56
SMG6-215ENST00000574501 RGL3Q3MIN7 710 aa18.58■□□□□ 0.56
SMG6-215ENST00000574501 ADGBQ8N7X0 1667 aa18.57■□□□□ 0.56
SMG6-215ENST00000574501 BCAR3O75815 825 aa18.57■□□□□ 0.56
SMG6-215ENST00000574501 WDR43Q15061 677 aaKnown RBP eCLIP18.57■□□□□ 0.56
SMG6-215ENST00000574501 PANK2Q9BZ23 570 aa18.57■□□□□ 0.56
SMG6-215ENST00000574501 GZF1Q9H116 711 aaPredicted RBP18.57■□□□□ 0.56
SMG6-215ENST00000574501 ZMYND15Q9H091 742 aa18.56■□□□□ 0.56
SMG6-215ENST00000574501 PNNQ9H307 717 aaKnown RBP18.56■□□□□ 0.56
SMG6-215ENST00000574501 PRG4Q92954 1404 aaPredicted RBP18.56■□□□□ 0.56
SMG6-215ENST00000574501 ANTXR1Q9H6X2 564 aa18.55■□□□□ 0.56
SMG6-215ENST00000574501 SPRYD3Q8NCJ5 442 aa18.54■□□□□ 0.56
SMG6-215ENST00000574501 CHMP7Q8WUX9 453 aaPredicted RBP18.54■□□□□ 0.56
SMG6-215ENST00000574501 ADGRL2O95490 1459 aa18.54■□□□□ 0.56
SMG6-215ENST00000574501 NUP153P49790 1475 aaKnown RBP18.54■□□□□ 0.56
SMG6-215ENST00000574501 ZNF521Q96K83 1311 aa18.54■□□□□ 0.56
SMG6-215ENST00000574501 GOLGA6L3A6NEY3 463 aa18.53■□□□□ 0.56
SMG6-215ENST00000574501 SPINK5Q9NQ38 1064 aaPredicted RBP18.53■□□□□ 0.56
SMG6-215ENST00000574501 SLFN5Q08AF3 891 aa18.53■□□□□ 0.56
SMG6-215ENST00000574501 HSP90AA2PQ14568 343 aaPredicted RBP18.53■□□□□ 0.56
SMG6-215ENST00000574501 TESK2Q96S53 571 aa18.53■□□□□ 0.56
SMG6-215ENST00000574501 CCDC146Q8IYE0 955 aa18.52■□□□□ 0.56
SMG6-215ENST00000574501 MAGI1Q96QZ7 1491 aaPredicted RBP18.52■□□□□ 0.56
SMG6-215ENST00000574501 HSP90AA1P07900 732 aaKnown RBP18.51■□□□□ 0.55
SMG6-215ENST00000574501 COL17A1Q9UMD9 1497 aaPredicted RBP18.51■□□□□ 0.55
SMG6-215ENST00000574501 EIF3AQ14152 1382 aaKnown RBP18.5■□□□□ 0.55
SMG6-215ENST00000574501 PRAG1Q86YV5 1406 aa18.5■□□□□ 0.55
SMG6-215ENST00000574501 GPATCH8Q9UKJ3 1502 aaKnown RBP18.5■□□□□ 0.55
SMG6-215ENST00000574501 PPP2R1AP30153 589 aa18.5■□□□□ 0.55
SMG6-215ENST00000574501 CLCN1P35523 988 aa18.5■□□□□ 0.55
SMG6-215ENST00000574501 ADAMTS12P58397 1594 aa18.49■□□□□ 0.55
SMG6-215ENST00000574501 CEP170Q5SW79 1584 aa18.49■□□□□ 0.55
SMG6-215ENST00000574501 TBC1D2Q9BYX2 928 aa18.48■□□□□ 0.55
SMG6-215ENST00000574501 VIRMAQ69YN4 1812 aaKnown RBP18.48■□□□□ 0.55
SMG6-215ENST00000574501 TRPM1Q7Z4N2 1603 aa18.47■□□□□ 0.55
SMG6-215ENST00000574501 KDM5DQ9BY66 1539 aa18.47■□□□□ 0.55
SMG6-215ENST00000574501 FSD2A1L4K1 749 aa18.47■□□□□ 0.55
SMG6-215ENST00000574501 SYNJ2O15056 1496 aa18.47■□□□□ 0.55
SMG6-215ENST00000574501 NLRP1Q9C000 1473 aa18.47■□□□□ 0.55
SMG6-215ENST00000574501 CROCC2H7BZ55 1655 aa18.47■□□□□ 0.55
SMG6-215ENST00000574501 TMF1P82094 1093 aa18.47■□□□□ 0.55
SMG6-215ENST00000574501 ERBINQ96RT1 1412 aa18.46■□□□□ 0.55
SMG6-215ENST00000574501 TROQ12816 1431 aaPredicted RBP18.45■□□□□ 0.54
SMG6-215ENST00000574501 COG6Q9Y2V7 657 aa18.45■□□□□ 0.54
SMG6-215ENST00000574501 MAPK8IP3Q9UPT6 1336 aa18.45■□□□□ 0.54
SMG6-215ENST00000574501 PANK1Q8TE04 598 aa18.45■□□□□ 0.54
SMG6-215ENST00000574501 RRP9O43818 475 aaKnown RBP18.44■□□□□ 0.54
Retrieved 100 of 20,778 RNA–protein pairs in 66.6 ms