RNA–Protein interactions for RNA: ENST00000573584.5

NUP88-207, Transcript of nucleoporin 88, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene NUP88, Length 2,916 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP88-207ENST00000573584 ATP10BO94823 1461 aa21.01■□□□□ 0.95
NUP88-207ENST00000573584 KDM5DQ9BY66 1539 aa21.01■□□□□ 0.95
NUP88-207ENST00000573584 NOP58Q9Y2X3 529 aaKnown RBP21■□□□□ 0.95
NUP88-207ENST00000573584 NUP160Q12769 1436 aa21■□□□□ 0.95
NUP88-207ENST00000573584 MYT1LQ9UL68 1186 aa20.98■□□□□ 0.95
NUP88-207ENST00000573584 PTPRGP23470 1445 aa20.98■□□□□ 0.95
NUP88-207ENST00000573584 ABCA8O94911 1581 aa20.97■□□□□ 0.95
NUP88-207ENST00000573584 ERCC6Q03468 1493 aa20.96■□□□□ 0.95
NUP88-207ENST00000573584 PAK3O75914 559 aaPredicted RBP20.94■□□□□ 0.94
NUP88-207ENST00000573584 ANP32AP39687 249 aaKnown RBP20.93■□□□□ 0.94
NUP88-207ENST00000573584 NLRP13Q86W25 1043 aa20.93■□□□□ 0.94
NUP88-207ENST00000573584 RRP1P56182 461 aaKnown RBP20.92■□□□□ 0.94
NUP88-207ENST00000573584 SALL2Q9Y467 1007 aaPredicted RBP20.91■□□□□ 0.94
NUP88-207ENST00000573584 ARHGEF5Q12774 1597 aa20.9■□□□□ 0.94
NUP88-207ENST00000573584 RGL3Q3MIN7 710 aa20.9■□□□□ 0.94
NUP88-207ENST00000573584 IPO9Q96P70 1041 aaKnown RBP20.9■□□□□ 0.94
NUP88-207ENST00000573584 RCAN3Q9UKA8 241 aa20.9■□□□□ 0.94
NUP88-207ENST00000573584 FAM135AQ9P2D6 1515 aa20.89■□□□□ 0.94
NUP88-207ENST00000573584 CCDC144AA2RUR9 1427 aa20.89■□□□□ 0.93
NUP88-207ENST00000573584 PRAG1Q86YV5 1406 aa20.89■□□□□ 0.93
NUP88-207ENST00000573584 PARD3Q8TEW0 1356 aa20.88■□□□□ 0.93
NUP88-207ENST00000573584 NBPF1Q3BBV0 1214 aa20.88■□□□□ 0.93
NUP88-207ENST00000573584 RSPH4AQ5TD94 716 aa20.88■□□□□ 0.93
NUP88-207ENST00000573584 E9PCH4 1651 aa20.88■□□□□ 0.93
NUP88-207ENST00000573584 EXOC6Q8TAG9 804 aa20.88■□□□□ 0.93
NUP88-207ENST00000573584 CCDC141Q6ZP82 1450 aa20.87■□□□□ 0.93
NUP88-207ENST00000573584 PER1O15534 1290 aaPredicted RBP20.86■□□□□ 0.93
NUP88-207ENST00000573584 PDE3BQ13370 1112 aa20.86■□□□□ 0.93
NUP88-207ENST00000573584 NBR1Q14596 966 aa20.86■□□□□ 0.93
NUP88-207ENST00000573584 DEKP35659 375 aaKnown RBP20.85■□□□□ 0.93
NUP88-207ENST00000573584 GRWD1Q9BQ67 446 aaKnown RBP eCLIP20.83■□□□□ 0.93
NUP88-207ENST00000573584 ZBTB47Q9UFB7 747 aaPredicted RBP20.83■□□□□ 0.93
NUP88-207ENST00000573584 SAMD9LQ8IVG5 1584 aa20.82■□□□□ 0.92
NUP88-207ENST00000573584 TRPM1Q7Z4N2 1603 aa20.82■□□□□ 0.92
NUP88-207ENST00000573584 GPRASP1Q5JY77 1395 aa20.81■□□□□ 0.92
NUP88-207ENST00000573584 CC2D1BQ5T0F9 858 aaKnown RBP20.81■□□□□ 0.92
NUP88-207ENST00000573584 WASHC2CQ9Y4E1 1318 aa20.8■□□□□ 0.92
NUP88-207ENST00000573584 CDCA7LQ96GN5 454 aa20.8■□□□□ 0.92
NUP88-207ENST00000573584 PLA2R1Q13018 1463 aa20.8■□□□□ 0.92
NUP88-207ENST00000573584 TCERG1O14776 1098 aaKnown RBP20.79■□□□□ 0.92
NUP88-207ENST00000573584 TESK2Q96S53 571 aa20.79■□□□□ 0.92
NUP88-207ENST00000573584 A2MP01023 1474 aa20.78■□□□□ 0.92
NUP88-207ENST00000573584 PANK3Q9H999 370 aa20.77■□□□□ 0.92
NUP88-207ENST00000573584 DISP3Q9P2K9 1392 aa20.77■□□□□ 0.92
NUP88-207ENST00000573584 CDC42BPBQ9Y5S2 1711 aa20.77■□□□□ 0.92
NUP88-207ENST00000573584 COL17A1Q9UMD9 1497 aaPredicted RBP20.77■□□□□ 0.91
NUP88-207ENST00000573584 PREX2Q70Z35 1606 aa20.76■□□□□ 0.91
NUP88-207ENST00000573584 SYCP2Q9BX26 1530 aa20.74■□□□□ 0.91
NUP88-207ENST00000573584 TMF1P82094 1093 aa20.74■□□□□ 0.91
NUP88-207ENST00000573584 ERBINQ96RT1 1412 aa20.73■□□□□ 0.91
NUP88-207ENST00000573584 PDE4AP27815 886 aa20.72■□□□□ 0.91
NUP88-207ENST00000573584 NPM2Q86SE8 214 aaKnown RBP20.72■□□□□ 0.91
NUP88-207ENST00000573584 PRDM15P57071 1507 aaPredicted RBP20.72■□□□□ 0.91
NUP88-207ENST00000573584 ARHGAP5Q13017 1502 aa20.71■□□□□ 0.91
NUP88-207ENST00000573584 UNC13BO14795 1591 aa20.71■□□□□ 0.91
NUP88-207ENST00000573584 PLIN1O60240 522 aa20.71■□□□□ 0.91
NUP88-207ENST00000573584 INSRP06213 1382 aa20.71■□□□□ 0.91
NUP88-207ENST00000573584 PLEKHH2Q8IVE3 1493 aa20.7■□□□□ 0.9
NUP88-207ENST00000573584 BLMP54132 1417 aaPredicted RBP20.7■□□□□ 0.9
NUP88-207ENST00000573584 MS4A1P11836 297 aa20.69■□□□□ 0.9
NUP88-207ENST00000573584 RTL5Q5HYW3 569 aaPredicted RBP20.69■□□□□ 0.9
NUP88-207ENST00000573584 LAMC1P11047 1609 aa20.69■□□□□ 0.9
NUP88-207ENST00000573584 MAST1Q9Y2H9 1570 aa20.69■□□□□ 0.9
NUP88-207ENST00000573584 BACH2Q9BYV9 841 aa20.68■□□□□ 0.9
NUP88-207ENST00000573584 ZMYM4Q5VZL5 1548 aa20.67■□□□□ 0.9
NUP88-207ENST00000573584 EIF2AK4Q9P2K8 1649 aaKnown RBP20.65■□□□□ 0.9
NUP88-207ENST00000573584 TTC37Q6PGP7 1564 aa20.65■□□□□ 0.9
NUP88-207ENST00000573584 IQGAP3Q86VI3 1631 aa20.65■□□□□ 0.9
NUP88-207ENST00000573584 CRBNQ96SW2 442 aa20.65■□□□□ 0.9
NUP88-207ENST00000573584 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP20.64■□□□□ 0.89
NUP88-207ENST00000573584 ADAMTS8Q9UP79 889 aa20.64■□□□□ 0.89
NUP88-207ENST00000573584 ATP10AO60312 1499 aa20.64■□□□□ 0.89
NUP88-207ENST00000573584 PLXNC1O60486 1568 aa20.62■□□□□ 0.89
NUP88-207ENST00000573584 MYO5CQ9NQX4 1742 aa20.61■□□□□ 0.89
NUP88-207ENST00000573584 DUOX2Q9NRD8 1548 aa20.61■□□□□ 0.89
NUP88-207ENST00000573584 KNSTRNQ9Y448 316 aa20.61■□□□□ 0.89
NUP88-207ENST00000573584 PPP2R1AP30153 589 aa20.57■□□□□ 0.88
NUP88-207ENST00000573584 WDR43Q15061 677 aaKnown RBP eCLIP20.57■□□□□ 0.88
NUP88-207ENST00000573584 C20orf194Q5TEA3 1177 aa20.57■□□□□ 0.88
NUP88-207ENST00000573584 SKAP1Q86WV1 359 aa20.57■□□□□ 0.88
NUP88-207ENST00000573584 MAGI2Q86UL8 1455 aa20.57■□□□□ 0.88
NUP88-207ENST00000573584 WDR7Q9Y4E6 1490 aa20.56■□□□□ 0.88
NUP88-207ENST00000573584 AMER1Q5JTC6 1135 aaPredicted RBP20.54■□□□□ 0.88
NUP88-207ENST00000573584 LAS1LQ9Y4W2 734 aaKnown RBP20.54■□□□□ 0.88
NUP88-207ENST00000573584 CDCA8Q53HL2 280 aa20.54■□□□□ 0.88
NUP88-207ENST00000573584 EFCAB2Q5VUJ9 269 aa20.54■□□□□ 0.88
NUP88-207ENST00000573584 PLEKHH1Q9ULM0 1364 aa20.53■□□□□ 0.88
NUP88-207ENST00000573584 RNF17Q9BXT8 1623 aaKnown RBP20.53■□□□□ 0.88
NUP88-207ENST00000573584 DUSP27Q5VZP5 1158 aa20.53■□□□□ 0.88
NUP88-207ENST00000573584 PLCH2O75038 1416 aa20.51■□□□□ 0.87
NUP88-207ENST00000573584 GOLGA2Q08379 1002 aa20.5■□□□□ 0.87
NUP88-207ENST00000573584 NEFMP07197 916 aa20.5■□□□□ 0.87
NUP88-207ENST00000573584 ABCC2Q92887 1545 aa20.5■□□□□ 0.87
NUP88-207ENST00000573584 KDM2BQ8NHM5 1336 aa20.49■□□□□ 0.87
NUP88-207ENST00000573584 ZNF521Q96K83 1311 aa20.49■□□□□ 0.87
NUP88-207ENST00000573584 USP35Q9P2H5 1018 aa20.48■□□□□ 0.87
NUP88-207ENST00000573584 CENPQQ7L2Z9 268 aaPredicted RBP20.47■□□□□ 0.87
NUP88-207ENST00000573584 DDRGK1Q96HY6 314 aa20.47■□□□□ 0.87
NUP88-207ENST00000573584 MADDQ8WXG6 1647 aa20.47■□□□□ 0.87
NUP88-207ENST00000573584 TRAPPC8Q9Y2L5 1435 aa20.47■□□□□ 0.87
Retrieved 100 of 20,778 RNA–protein pairs in 48.3 ms