RNA–Protein interactions for RNA: ENST00000572750.1

CHD3-215, Transcript of chromodomain helicase DNA binding protein 3, humanhuman

TSL 3

Gene CHD3, Length 750 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHD3-215ENST00000572750 RRBP1Q9P2E9 1410 aaKnown RBP24.28■■□□□ 1.48
CHD3-215ENST00000572750 SETD1BQ9UPS6 1966 aaKnown RBP24.27■■□□□ 1.48
CHD3-215ENST00000572750 DHX29Q7Z478 1369 aaKnown RBP24.27■■□□□ 1.48
CHD3-215ENST00000572750 EIF2AK4Q9P2K8 1649 aaKnown RBP24.25■■□□□ 1.47
CHD3-215ENST00000572750 KIF15Q9NS87 1388 aa24.25■■□□□ 1.47
CHD3-215ENST00000572750 DUOX2Q9NRD8 1548 aa24.25■■□□□ 1.47
CHD3-215ENST00000572750 ADGRL2O95490 1459 aa24.24■■□□□ 1.47
CHD3-215ENST00000572750 C3P01024 1663 aa24.24■■□□□ 1.47
CHD3-215ENST00000572750 CHIC2Q9UKJ5 165 aa24.23■■□□□ 1.47
CHD3-215ENST00000572750 PTPRKQ15262 1439 aa24.23■■□□□ 1.47
CHD3-215ENST00000572750 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP24.22■■□□□ 1.47
CHD3-215ENST00000572750 CLTCQ00610 1675 aaKnown RBP24.21■■□□□ 1.47
CHD3-215ENST00000572750 RNF17Q9BXT8 1623 aaKnown RBP24.21■■□□□ 1.47
CHD3-215ENST00000572750 NCOA1Q15788 1441 aa24.21■■□□□ 1.47
CHD3-215ENST00000572750 ANKRD30AQ9BXX3 1397 aa24.2■■□□□ 1.46
CHD3-215ENST00000572750 RRP7BPQ9NSQ0 103 aa24.18■■□□□ 1.46
CHD3-215ENST00000572750 MROH2AA6NES4 1674 aa24.18■■□□□ 1.46
CHD3-215ENST00000572750 ITGAEP38570 1179 aa24.17■■□□□ 1.46
CHD3-215ENST00000572750 ERBINQ96RT1 1412 aa24.17■■□□□ 1.46
CHD3-215ENST00000572750 MROH1Q8NDA8 1641 aa24.17■■□□□ 1.46
CHD3-215ENST00000572750 KIF3BO15066 747 aa24.16■■□□□ 1.46
CHD3-215ENST00000572750 UBAP1LF5GYI3 381 aa24.15■■□□□ 1.46
CHD3-215ENST00000572750 GGT6Q6P531 493 aa24.15■■□□□ 1.46
CHD3-215ENST00000572750 ZNF335Q9H4Z2 1342 aaPredicted RBP24.13■■□□□ 1.45
CHD3-215ENST00000572750 CNTLNQ9NXG0 1405 aa24.13■■□□□ 1.45
CHD3-215ENST00000572750 KDM5DQ9BY66 1539 aa24.13■■□□□ 1.45
CHD3-215ENST00000572750 DEPDC5O75140 1603 aa24.13■■□□□ 1.45
CHD3-215ENST00000572750 MED1Q15648 1581 aaPredicted RBP24.12■■□□□ 1.45
CHD3-215ENST00000572750 PRDM15P57071 1507 aaPredicted RBP24.11■■□□□ 1.45
CHD3-215ENST00000572750 ESF1Q9H501 851 aaKnown RBP24.11■■□□□ 1.45
CHD3-215ENST00000572750 FAM135AQ9P2D6 1515 aa24.1■■□□□ 1.45
CHD3-215ENST00000572750 CEP152O94986 1710 aa24.1■■□□□ 1.45
CHD3-215ENST00000572750 ZC3H13Q5T200 1668 aaKnown RBP24.1■■□□□ 1.45
CHD3-215ENST00000572750 CAMSAP1Q5T5Y3 1602 aa24.1■■□□□ 1.45
CHD3-215ENST00000572750 ROCK1Q13464 1354 aa24.09■■□□□ 1.45
CHD3-215ENST00000572750 NCKAP5LQ9HCH0 1330 aa24.07■■□□□ 1.44
CHD3-215ENST00000572750 ABCC3O15438 1527 aa24.06■■□□□ 1.44
CHD3-215ENST00000572750 ANKRD50Q9ULJ7 1429 aa24.06■■□□□ 1.44
CHD3-215ENST00000572750 GCC2Q8IWJ2 1684 aa24.05■■□□□ 1.44
CHD3-215ENST00000572750 HSPA1LP34931 641 aa24.02■■□□□ 1.44
CHD3-215ENST00000572750 UNC13BO14795 1591 aa24.01■■□□□ 1.43
CHD3-215ENST00000572750 PPP6R1Q9UPN7 881 aa24.01■■□□□ 1.43
CHD3-215ENST00000572750 ZMYM3Q14202 1370 aa24.01■■□□□ 1.43
CHD3-215ENST00000572750 WASHC2CQ9Y4E1 1318 aa23.99■■□□□ 1.43
CHD3-215ENST00000572750 VWDEQ8N2E2 1590 aa23.99■■□□□ 1.43
CHD3-215ENST00000572750 PZPP20742 1482 aa23.96■■□□□ 1.43
CHD3-215ENST00000572750 GRWD1Q9BQ67 446 aaKnown RBP eCLIP23.96■■□□□ 1.43
CHD3-215ENST00000572750 MYO3AQ8NEV4 1616 aa23.95■■□□□ 1.43
CHD3-215ENST00000572750 NAIPQ13075 1403 aa23.94■■□□□ 1.42
CHD3-215ENST00000572750 NPATQ14207 1427 aa23.94■■□□□ 1.42
CHD3-215ENST00000572750 HFM1A2PYH4 1435 aa23.93■■□□□ 1.42
CHD3-215ENST00000572750 KANK1Q14678 1352 aa23.92■■□□□ 1.42
CHD3-215ENST00000572750 LMTK2Q8IWU2 1503 aa23.92■■□□□ 1.42
CHD3-215ENST00000572750 EFCAB6Q5THR3 1501 aa23.9■■□□□ 1.42
CHD3-215ENST00000572750 IQGAP3Q86VI3 1631 aa23.9■■□□□ 1.42
CHD3-215ENST00000572750 PIP4K2BP78356 416 aa23.89■■□□□ 1.41
CHD3-215ENST00000572750 ZNF142P52746 1687 aaPredicted RBP23.89■■□□□ 1.41
CHD3-215ENST00000572750 TET3O43151 1660 aa23.88■■□□□ 1.41
CHD3-215ENST00000572750 PLA2R1Q13018 1463 aa23.87■■□□□ 1.41
CHD3-215ENST00000572750 CFAP65Q6ZU64 1925 aaKnown RBP23.86■■□□□ 1.41
CHD3-215ENST00000572750 ERVK-7P63135 1459 aa23.86■■□□□ 1.41
CHD3-215ENST00000572750 SCAF1Q9H7N4 1312 aaKnown RBP23.85■■□□□ 1.41
CHD3-215ENST00000572750 PKD2Q13563 968 aa23.85■■□□□ 1.41
CHD3-215ENST00000572750 FBXO31Q5XUX0 539 aaPredicted RBP23.85■■□□□ 1.41
CHD3-215ENST00000572750 CEP170BQ9Y4F5 1589 aaPredicted RBP23.85■■□□□ 1.41
CHD3-215ENST00000572750 ALKQ9UM73 1620 aa23.84■■□□□ 1.41
CHD3-215ENST00000572750 ARHGAP31Q2M1Z3 1444 aa23.84■■□□□ 1.41
CHD3-215ENST00000572750 TNRQ92752 1358 aa23.82■■□□□ 1.4
CHD3-215ENST00000572750 E9PCH4 1651 aa23.81■■□□□ 1.4
CHD3-215ENST00000572750 NUP155O75694 1391 aa23.79■■□□□ 1.4
CHD3-215ENST00000572750 PHF23Q9BUL5 403 aaPredicted RBP23.77■■□□□ 1.4
CHD3-215ENST00000572750 SYNMO15061 1565 aa23.77■■□□□ 1.4
CHD3-215ENST00000572750 A2ML1A8K2U0 1454 aa23.75■■□□□ 1.39
CHD3-215ENST00000572750 RPRD2Q5VT52 1461 aaKnown RBP23.75■■□□□ 1.39
CHD3-215ENST00000572750 NLRP1Q9C000 1473 aa23.75■■□□□ 1.39
CHD3-215ENST00000572750 TOM1O60784 492 aa23.74■■□□□ 1.39
CHD3-215ENST00000572750 RGS17Q9UGC6 210 aaPredicted RBP23.73■■□□□ 1.39
CHD3-215ENST00000572750 NEURL4Q96JN8 1562 aa23.73■■□□□ 1.39
CHD3-215ENST00000572750 PIK3C2BO00750 1634 aa23.7■■□□□ 1.39
CHD3-215ENST00000572750 CPS1P31327 1500 aa23.7■■□□□ 1.38
CHD3-215ENST00000572750 NOS1P29475 1434 aa23.7■■□□□ 1.38
CHD3-215ENST00000572750 SETD5Q9C0A6 1442 aa23.7■■□□□ 1.38
CHD3-215ENST00000572750 UBR1Q8IWV7 1749 aa23.7■■□□□ 1.38
CHD3-215ENST00000572750 UGGT1Q9NYU2 1555 aa23.69■■□□□ 1.38
CHD3-215ENST00000572750 SPHKAPQ2M3C7 1700 aa23.68■■□□□ 1.38
CHD3-215ENST00000572750 TRIM52Q96A61 297 aa23.66■■□□□ 1.38
CHD3-215ENST00000572750 RAB3GAP2Q9H2M9 1393 aa23.65■■□□□ 1.38
CHD3-215ENST00000572750 POLR1AO95602 1720 aaPredicted RBP23.64■■□□□ 1.38
CHD3-215ENST00000572750 SENP3Q9H4L4 574 aaPredicted RBP23.64■■□□□ 1.37
CHD3-215ENST00000572750 ADGRB3O60242 1522 aa23.62■■□□□ 1.37
CHD3-215ENST00000572750 KDM5AP29375 1690 aaKnown RBP23.61■■□□□ 1.37
CHD3-215ENST00000572750 MYO5BQ9ULV0 1848 aa23.6■■□□□ 1.37
CHD3-215ENST00000572750 TRPM2O94759 1503 aa23.58■■□□□ 1.36
CHD3-215ENST00000572750 CLTCL1P53675 1640 aa23.56■■□□□ 1.36
CHD3-215ENST00000572750 SLC4A1APQ9BWU0 796 aaKnown RBP23.56■■□□□ 1.36
CHD3-215ENST00000572750 STRCP1A6NGW2 1772 aa23.55■■□□□ 1.36
CHD3-215ENST00000572750 IDI1Q13907 227 aa23.55■■□□□ 1.36
CHD3-215ENST00000572750 TMEM131LA2VDJ0 1609 aa23.55■■□□□ 1.36
CHD3-215ENST00000572750 THEMISQ8N1K5 641 aaPredicted RBP23.52■■□□□ 1.36
CHD3-215ENST00000572750 SLIT1O75093 1534 aa23.52■■□□□ 1.36
Retrieved 100 of 20,778 RNA–protein pairs in 77 ms