RNA–Protein interactions for RNA: ENST00000572665.1

CIITA-208, Transcript of class II major histocompatibility complex transactivator, humanhuman

TSL 5

Gene CIITA, Length 560 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CIITA-208ENST00000572665 KDM6BO15054 1643 aa15.68■□□□□ 0.1
CIITA-208ENST00000572665 LARP6Q9BRS8 491 aaKnown RBP15.68■□□□□ 0.1
CIITA-208ENST00000572665 OCEL1Q9H607 264 aa15.68■□□□□ 0.1
CIITA-208ENST00000572665 UACAQ9BZF9 1416 aa15.68■□□□□ 0.1
CIITA-208ENST00000572665 MFSD10Q14728 455 aa15.67■□□□□ 0.1
CIITA-208ENST00000572665 CTTNBP2Q8WZ74 1663 aa15.67■□□□□ 0.1
CIITA-208ENST00000572665 DCBLD2Q96PD2 775 aa15.66■□□□□ 0.1
CIITA-208ENST00000572665 DISP1Q96F81 1524 aa15.66■□□□□ 0.1
CIITA-208ENST00000572665 E2F4Q16254 413 aa15.65■□□□□ 0.1
CIITA-208ENST00000572665 KIAA0556O60303 1618 aa15.65■□□□□ 0.1
CIITA-208ENST00000572665 PRKCSHP14314 528 aaPredicted RBP15.64■□□□□ 0.09
CIITA-208ENST00000572665 ASXL2Q76L83 1435 aa15.64■□□□□ 0.09
CIITA-208ENST00000572665 MICALL2Q8IY33 904 aa15.64■□□□□ 0.09
CIITA-208ENST00000572665 FAM9AQ8IZU1 332 aaPredicted RBP15.64■□□□□ 0.09
CIITA-208ENST00000572665 GLI2P10070 1586 aa15.63■□□□□ 0.09
CIITA-208ENST00000572665 GOLGA3Q08378 1498 aa15.63■□□□□ 0.09
CIITA-208ENST00000572665 PELP1Q8IZL8 1130 aaKnown RBP15.62■□□□□ 0.09
CIITA-208ENST00000572665 DDX27Q96GQ7 796 aaKnown RBP15.62■□□□□ 0.09
CIITA-208ENST00000572665 TPRNQ4KMQ1 711 aa15.61■□□□□ 0.09
CIITA-208ENST00000572665 KDM5BQ9UGL1 1544 aa15.6■□□□□ 0.09
CIITA-208ENST00000572665 PLCG2P16885 1265 aa15.6■□□□□ 0.09
CIITA-208ENST00000572665 ARHGEF1Q92888 912 aaKnown RBP15.59■□□□□ 0.09
CIITA-208ENST00000572665 ZCCHC11Q5TAX3 1644 aaKnown RBP15.58■□□□□ 0.09
CIITA-208ENST00000572665 BOLA1Q9Y3E2 137 aa15.57■□□□□ 0.08
CIITA-208ENST00000572665 TMEM121BQ9BXQ6 578 aaPredicted RBP15.56■□□□□ 0.08
CIITA-208ENST00000572665 GPHNQ9NQX3 736 aaPredicted RBP15.56■□□□□ 0.08
CIITA-208ENST00000572665 TEX14Q8IWB6 1497 aa15.56■□□□□ 0.08
CIITA-208ENST00000572665 PRXQ9BXM0 1461 aa15.55■□□□□ 0.08
CIITA-208ENST00000572665 EPRSP07814 1512 aaKnown RBP15.54■□□□□ 0.08
CIITA-208ENST00000572665 SLC39A7Q92504 469 aa15.54■□□□□ 0.08
CIITA-208ENST00000572665 MAP3K4Q9Y6R4 1608 aa15.54■□□□□ 0.08
CIITA-208ENST00000572665 SP7Q8TDD2 431 aaPredicted RBP15.53■□□□□ 0.08
CIITA-208ENST00000572665 COLQQ9Y215 455 aaPredicted RBP15.53■□□□□ 0.08
CIITA-208ENST00000572665 PPRC1Q5VV67 1664 aaKnown RBP15.53■□□□□ 0.08
CIITA-208ENST00000572665 SEC24BO95487 1268 aa15.52■□□□□ 0.08
CIITA-208ENST00000572665 CAMK2BQ13554 666 aa15.52■□□□□ 0.08
CIITA-208ENST00000572665 G3V3G9 751 aa15.51■□□□□ 0.07
CIITA-208ENST00000572665 POTEIP0CG38 1075 aa15.51■□□□□ 0.07
CIITA-208ENST00000572665 PPP1R15BQ5SWA1 713 aa15.51■□□□□ 0.07
CIITA-208ENST00000572665 WDR7Q9Y4E6 1490 aa15.51■□□□□ 0.07
CIITA-208ENST00000572665 L3MBTL3Q96JM7 780 aaPredicted RBP15.5■□□□□ 0.07
CIITA-208ENST00000572665 ABCA8O94911 1581 aa15.49■□□□□ 0.07
CIITA-208ENST00000572665 C7P10643 843 aa15.48■□□□□ 0.07
CIITA-208ENST00000572665 TMC2Q8TDI7 906 aa15.48■□□□□ 0.07
CIITA-208ENST00000572665 POTEFA5A3E0 1075 aa15.47■□□□□ 0.07
CIITA-208ENST00000572665 EEA1Q15075 1411 aa15.47■□□□□ 0.07
CIITA-208ENST00000572665 ARIH1Q9Y4X5 557 aaPredicted RBP15.47■□□□□ 0.07
CIITA-208ENST00000572665 CFAP43Q8NDM7 1665 aa15.47■□□□□ 0.07
CIITA-208ENST00000572665 DSG2Q14126 1118 aa15.45■□□□□ 0.06
CIITA-208ENST00000572665 METRNQ9UJH8 293 aa15.45■□□□□ 0.06
CIITA-208ENST00000572665 FOXK1P85037 733 aa15.43■□□□□ 0.06
CIITA-208ENST00000572665 KDM4FA0A1W2PPD8 638 aa15.42■□□□□ 0.06
CIITA-208ENST00000572665 KIF3CO14782 793 aa15.42■□□□□ 0.06
CIITA-208ENST00000572665 MAGI3Q5TCQ9 1506 aa15.42■□□□□ 0.06
CIITA-208ENST00000572665 CD109Q6YHK3 1445 aa15.42■□□□□ 0.06
CIITA-208ENST00000572665 C2orf72A6NCS6 295 aa15.41■□□□□ 0.06
CIITA-208ENST00000572665 KCNH8Q96L42 1107 aa15.4■□□□□ 0.06
CIITA-208ENST00000572665 SEMA3EO15041 775 aa15.39■□□□□ 0.05
CIITA-208ENST00000572665 SAMD9Q5K651 1589 aa15.39■□□□□ 0.05
CIITA-208ENST00000572665 TESPA1A2RU30 521 aaPredicted RBP15.37■□□□□ 0.05
CIITA-208ENST00000572665 DHX30Q7L2E3 1194 aaKnown RBP eCLIP15.37■□□□□ 0.05
CIITA-208ENST00000572665 COL17A1Q9UMD9 1497 aaPredicted RBP15.36■□□□□ 0.05
CIITA-208ENST00000572665 TMEM92Q6UXU6 159 aa15.36■□□□□ 0.05
CIITA-208ENST00000572665 PLPP6Q8IY26 295 aa15.36■□□□□ 0.05
CIITA-208ENST00000572665 EMILIN3Q9NT22 766 aa15.36■□□□□ 0.05
CIITA-208ENST00000572665 RAPGEF6Q8TEU7 1601 aa15.35■□□□□ 0.05
CIITA-208ENST00000572665 ADGRL1O94910 1474 aa15.35■□□□□ 0.05
CIITA-208ENST00000572665 ATP10BO94823 1461 aa15.34■□□□□ 0.05
CIITA-208ENST00000572665 LMOD2Q6P5Q4 547 aa15.34■□□□□ 0.05
CIITA-208ENST00000572665 PHLDB1Q86UU1 1377 aa15.34■□□□□ 0.05
CIITA-208ENST00000572665 TULP1O00294 542 aaPredicted RBP15.33■□□□□ 0.04
CIITA-208ENST00000572665 ABCA9Q8IUA7 1624 aa15.31■□□□□ 0.04
CIITA-208ENST00000572665 KIF21BO75037 1637 aa15.3■□□□□ 0.04
CIITA-208ENST00000572665 EFCAB5A4FU69 1503 aa15.29■□□□□ 0.04
CIITA-208ENST00000572665 ARAP3Q8WWN8 1544 aa15.29■□□□□ 0.04
CIITA-208ENST00000572665 ARID3CA6NKF2 412 aa15.29■□□□□ 0.04
CIITA-208ENST00000572665 DPYSL4O14531 572 aa15.29■□□□□ 0.04
CIITA-208ENST00000572665 C3orf67Q6ZVT6 689 aa15.27■□□□□ 0.04
CIITA-208ENST00000572665 RANGAP1P46060 587 aaPredicted RBP15.26■□□□□ 0.03
CIITA-208ENST00000572665 NEO1Q92859 1461 aa15.26■□□□□ 0.03
CIITA-208ENST00000572665 PLEKHD1A6NEE1 506 aa15.25■□□□□ 0.03
CIITA-208ENST00000572665 NUP153P49790 1475 aaKnown RBP15.24■□□□□ 0.03
CIITA-208ENST00000572665 FHOD3Q2V2M9 1422 aa15.24■□□□□ 0.03
CIITA-208ENST00000572665 SPDYE16A6NNV3 312 aaPredicted RBP15.23■□□□□ 0.03
CIITA-208ENST00000572665 PDIA6Q15084 440 aa15.23■□□□□ 0.03
CIITA-208ENST00000572665 SMYD5Q6GMV2 418 aa15.23■□□□□ 0.03
CIITA-208ENST00000572665 CFAP74Q9C0B2 1584 aa15.21■□□□□ 0.03
CIITA-208ENST00000572665 UBTFP17480 764 aaKnown RBP15.19■□□□□ 0.02
CIITA-208ENST00000572665 MLLT3P42568 568 aaPredicted RBP15.19■□□□□ 0.02
CIITA-208ENST00000572665 OXER1Q8TDS5 423 aa15.17■□□□□ 0.02
CIITA-208ENST00000572665 FMN1Q68DA7 1419 aa15.17■□□□□ 0.02
CIITA-208ENST00000572665 MAP3K9P80192 1104 aa15.16■□□□□ 0.02
CIITA-208ENST00000572665 UPF1Q92900 1129 aaKnown RBP eCLIP15.16■□□□□ 0.02
CIITA-208ENST00000572665 EIF2AK3Q9NZJ5 1116 aaKnown RBP15.15■□□□□ 0.02
CIITA-208ENST00000572665 CDK11AQ9UQ88 783 aaPredicted RBP15.14■□□□□ 0.01
CIITA-208ENST00000572665 HECW2Q9P2P5 1572 aa15.14■□□□□ 0.01
CIITA-208ENST00000572665 HECW1Q76N89 1606 aa15.14■□□□□ 0.01
CIITA-208ENST00000572665 RAPGEF3O95398 923 aa15.13■□□□□ 0.01
CIITA-208ENST00000572665 FANCAO15360 1455 aa15.13■□□□□ 0.01
CIITA-208ENST00000572665 DENND4BO75064 1496 aaPredicted RBP15.13■□□□□ 0.01
Retrieved 100 of 20,778 RNA–protein pairs in 19.5 ms