RNA–Protein interactions for RNA: ENST00000570546.5

CIITA-204, Transcript of class II major histocompatibility complex transactivator, humanhuman

TSL 2

Gene CIITA, Length 5,342 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CIITA-204ENST00000570546 LMOD2Q6P5Q4 547 aa19.4■□□□□ 0.7
CIITA-204ENST00000570546 APBB1O00213 710 aa19.39■□□□□ 0.7
CIITA-204ENST00000570546 GZF1Q9H116 711 aaPredicted RBP19.39■□□□□ 0.69
CIITA-204ENST00000570546 WASHC2AQ641Q2 1341 aa19.38■□□□□ 0.69
CIITA-204ENST00000570546 PTMSP20962 102 aa19.38■□□□□ 0.69
CIITA-204ENST00000570546 MSNP26038 577 aaKnown RBP19.37■□□□□ 0.69
CIITA-204ENST00000570546 TERF2IPQ9NYB0 399 aa19.37■□□□□ 0.69
CIITA-204ENST00000570546 ZNF644Q9H582 1327 aaPredicted RBP19.37■□□□□ 0.69
CIITA-204ENST00000570546 TOP2BQ02880 1626 aa19.37■□□□□ 0.69
CIITA-204ENST00000570546 PRXQ9BXM0 1461 aa19.36■□□□□ 0.69
CIITA-204ENST00000570546 FAM161AQ3B820 660 aa19.36■□□□□ 0.69
CIITA-204ENST00000570546 USP35Q9P2H5 1018 aa19.35■□□□□ 0.69
CIITA-204ENST00000570546 RRP7AQ9Y3A4 280 aaKnown RBP19.35■□□□□ 0.69
CIITA-204ENST00000570546 FGD1P98174 961 aa19.34■□□□□ 0.69
CIITA-204ENST00000570546 TRAK1Q9UPV9 953 aa19.34■□□□□ 0.69
CIITA-204ENST00000570546 NUTM2DQ5VT03 806 aaPredicted RBP19.34■□□□□ 0.69
CIITA-204ENST00000570546 E9PSI1 815 aa19.33■□□□□ 0.69
CIITA-204ENST00000570546 PTPRGP23470 1445 aa19.32■□□□□ 0.68
CIITA-204ENST00000570546 GOLGA6L3A6NEY3 463 aa19.31■□□□□ 0.68
CIITA-204ENST00000570546 WASHC2CQ9Y4E1 1318 aa19.3■□□□□ 0.68
CIITA-204ENST00000570546 GOLGA6L4A6NEF3 574 aa19.3■□□□□ 0.68
CIITA-204ENST00000570546 CFTRP13569 1480 aa19.3■□□□□ 0.68
CIITA-204ENST00000570546 SLC4A3P48751 1232 aa19.29■□□□□ 0.68
CIITA-204ENST00000570546 TIAM1Q13009 1591 aa19.28■□□□□ 0.68
CIITA-204ENST00000570546 PRDM2Q13029 1718 aa19.28■□□□□ 0.68
CIITA-204ENST00000570546 NAP1L2Q9ULW6 460 aaPredicted RBP19.27■□□□□ 0.68
CIITA-204ENST00000570546 EFCAB5A4FU69 1503 aa19.27■□□□□ 0.68
CIITA-204ENST00000570546 GOLGA6L6A8MZA4 724 aa19.27■□□□□ 0.67
CIITA-204ENST00000570546 MIA2Q96PC5 1412 aa19.27■□□□□ 0.67
CIITA-204ENST00000570546 APAF1O14727 1248 aa19.26■□□□□ 0.67
CIITA-204ENST00000570546 BCL2L13Q9BXK5 485 aa19.26■□□□□ 0.67
CIITA-204ENST00000570546 CGNL1Q0VF96 1302 aa19.25■□□□□ 0.67
CIITA-204ENST00000570546 ANKRD50Q9ULJ7 1429 aa19.25■□□□□ 0.67
CIITA-204ENST00000570546 KIAA1211Q6ZU35 1233 aa19.24■□□□□ 0.67
CIITA-204ENST00000570546 TAOK2Q9UL54 1235 aa19.24■□□□□ 0.67
CIITA-204ENST00000570546 COG6Q9Y2V7 657 aa19.24■□□□□ 0.67
CIITA-204ENST00000570546 LMOD3Q0VAK6 560 aa19.23■□□□□ 0.67
CIITA-204ENST00000570546 ZKSCAN2Q63HK3 967 aa19.22■□□□□ 0.67
CIITA-204ENST00000570546 SUGP2Q8IX01 1082 aaKnown RBP eCLIP19.22■□□□□ 0.67
CIITA-204ENST00000570546 BRD4O60885 1362 aaPredicted RBP19.22■□□□□ 0.67
CIITA-204ENST00000570546 EHBP1L1Q8N3D4 1523 aa19.22■□□□□ 0.67
CIITA-204ENST00000570546 FOXD4L1Q9NU39 408 aa19.22■□□□□ 0.67
CIITA-204ENST00000570546 AQRO60306 1485 aaKnown RBP eCLIP19.22■□□□□ 0.67
CIITA-204ENST00000570546 CHAF1AQ13111 956 aaPredicted RBP19.21■□□□□ 0.67
CIITA-204ENST00000570546 STK31Q9BXU1 1019 aa19.21■□□□□ 0.67
CIITA-204ENST00000570546 GSE1Q14687 1217 aa19.21■□□□□ 0.67
CIITA-204ENST00000570546 WDR97A6NE52 1622 aa19.21■□□□□ 0.67
CIITA-204ENST00000570546 HMMRO75330 724 aa19.21■□□□□ 0.67
CIITA-204ENST00000570546 CDK11BP21127 795 aaKnown RBP19.2■□□□□ 0.66
CIITA-204ENST00000570546 HFM1A2PYH4 1435 aa19.2■□□□□ 0.66
CIITA-204ENST00000570546 EVC2Q86UK5 1308 aa19.19■□□□□ 0.66
CIITA-204ENST00000570546 ZBTB4Q9P1Z0 1013 aaPredicted RBP19.19■□□□□ 0.66
CIITA-204ENST00000570546 NGEFQ8N5V2 710 aa19.18■□□□□ 0.66
CIITA-204ENST00000570546 PAK3O75914 559 aaPredicted RBP19.17■□□□□ 0.66
CIITA-204ENST00000570546 DRC7Q8IY82 874 aa19.17■□□□□ 0.66
CIITA-204ENST00000570546 NRDCO43847 1150 aa19.16■□□□□ 0.66
CIITA-204ENST00000570546 SLC4A10Q6U841 1118 aa19.16■□□□□ 0.66
CIITA-204ENST00000570546 SYAP1Q96A49 352 aaPredicted RBP19.16■□□□□ 0.66
CIITA-204ENST00000570546 DDX11L8A8MPP1 907 aa19.16■□□□□ 0.66
CIITA-204ENST00000570546 TRIM6-TRIM34B2RNG4 842 aa19.16■□□□□ 0.66
CIITA-204ENST00000570546 VGFO15240 615 aaPredicted RBP19.15■□□□□ 0.66
CIITA-204ENST00000570546 NBPF8Q3BBV2 869 aa19.13■□□□□ 0.65
CIITA-204ENST00000570546 ANKRD45Q5TZF3 282 aa19.13■□□□□ 0.65
CIITA-204ENST00000570546 HMGXB3Q12766 1538 aa19.13■□□□□ 0.65
CIITA-204ENST00000570546 ST18O60284 1047 aa19.11■□□□□ 0.65
CIITA-204ENST00000570546 RUNDC1Q96C34 613 aa19.11■□□□□ 0.65
CIITA-204ENST00000570546 GRIN2BQ13224 1484 aa19.11■□□□□ 0.65
CIITA-204ENST00000570546 ELL2O00472 640 aaPredicted RBP19.11■□□□□ 0.65
CIITA-204ENST00000570546 KIAA2012Q0VF49 1180 aa19.11■□□□□ 0.65
CIITA-204ENST00000570546 CHMP4AQ9BY43 222 aa19.1■□□□□ 0.65
CIITA-204ENST00000570546 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP19.1■□□□□ 0.65
CIITA-204ENST00000570546 DDX19BQ9UMR2 479 aa19.1■□□□□ 0.65
CIITA-204ENST00000570546 ADAMTS8Q9UP79 889 aa19.1■□□□□ 0.65
CIITA-204ENST00000570546 STAC3Q96MF2 364 aa19.1■□□□□ 0.65
CIITA-204ENST00000570546 NOL8Q76FK4 1167 aaKnown RBP19.09■□□□□ 0.65
CIITA-204ENST00000570546 DZIP1LQ8IYY4 767 aaKnown RBP19.09■□□□□ 0.65
CIITA-204ENST00000570546 KIAA1107Q9UPP5 1409 aa19.09■□□□□ 0.65
CIITA-204ENST00000570546 CDCA7LQ96GN5 454 aa19.08■□□□□ 0.65
CIITA-204ENST00000570546 SUPT6HQ7KZ85 1726 aaKnown RBP19.08■□□□□ 0.65
CIITA-204ENST00000570546 HECW1Q76N89 1606 aa19.08■□□□□ 0.64
CIITA-204ENST00000570546 GPATCH3Q96I76 525 aa19.08■□□□□ 0.64
CIITA-204ENST00000570546 AKNAQ7Z591 1439 aa19.08■□□□□ 0.64
CIITA-204ENST00000570546 MINK1Q8N4C8 1332 aaPredicted RBP19.07■□□□□ 0.64
CIITA-204ENST00000570546 TOPBP1Q92547 1522 aa19.07■□□□□ 0.64
CIITA-204ENST00000570546 AMPHP49418 695 aa19.06■□□□□ 0.64
CIITA-204ENST00000570546 DIAPH1O60610 1272 aaKnown RBP19.05■□□□□ 0.64
CIITA-204ENST00000570546 NGDNQ8NEJ9 315 aaKnown RBP19.05■□□□□ 0.64
CIITA-204ENST00000570546 COG3Q96JB2 828 aa19.05■□□□□ 0.64
CIITA-204ENST00000570546 POLA1P09884 1462 aaPredicted RBP19.05■□□□□ 0.64
CIITA-204ENST00000570546 RIPK4P57078 832 aa19.04■□□□□ 0.64
CIITA-204ENST00000570546 CCDC184Q52MB2 194 aa19.04■□□□□ 0.64
CIITA-204ENST00000570546 PCF11O94913 1555 aaKnown RBP19.04■□□□□ 0.64
CIITA-204ENST00000570546 SMG6Q86US8 1419 aaKnown RBP19.04■□□□□ 0.64
CIITA-204ENST00000570546 NESP48681 1621 aa19.04■□□□□ 0.64
CIITA-204ENST00000570546 HTATSF1O43719 755 aaKnown RBP19.04■□□□□ 0.64
CIITA-204ENST00000570546 DAPK1P53355 1430 aa19.03■□□□□ 0.64
CIITA-204ENST00000570546 SKOR2Q2VWA4 1001 aaPredicted RBP19.03■□□□□ 0.64
CIITA-204ENST00000570546 HDAC5Q9UQL6 1122 aa19.03■□□□□ 0.64
CIITA-204ENST00000570546 ARHGAP5Q13017 1502 aa19.03■□□□□ 0.64
CIITA-204ENST00000570546 NUTM2FA1L443 756 aa19.03■□□□□ 0.64
Retrieved 100 of 20,778 RNA–protein pairs in 16.9 ms