RNA–Protein interactions for RNA: ENST00000568612.5

VPS35-208, Transcript of VPS35, retromer complex component, humanhuman

TSL 5

Gene VPS35, Length 697 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-208ENST00000568612 MLLT3P42568 568 aaPredicted RBP6.33□□□□□ -1.4
VPS35-208ENST00000568612 POTEEQ6S8J3 1075 aa6.33□□□□□ -1.4
VPS35-208ENST00000568612 BCL2L12Q9HB09 334 aa6.33□□□□□ -1.4
VPS35-208ENST00000568612 LSM11P83369 360 aaKnown RBP eCLIP6.31□□□□□ -1.4
VPS35-208ENST00000568612 DMRTA1Q5VZB9 504 aa6.31□□□□□ -1.4
VPS35-208ENST00000568612 EN1Q05925 392 aaPredicted RBP6.3□□□□□ -1.4
VPS35-208ENST00000568612 TSR1Q2NL82 804 aaKnown RBP6.3□□□□□ -1.4
VPS35-208ENST00000568612 C6orf132Q5T0Z8 1188 aa6.3□□□□□ -1.4
VPS35-208ENST00000568612 OSBPP22059 807 aa6.29□□□□□ -1.4
VPS35-208ENST00000568612 COL9A1P20849 921 aa6.28□□□□□ -1.4
VPS35-208ENST00000568612 PRIM1P49642 420 aaKnown RBP6.28□□□□□ -1.4
VPS35-208ENST00000568612 SMYD5Q6GMV2 418 aa6.28□□□□□ -1.4
VPS35-208ENST00000568612 STAC3Q96MF2 364 aa6.28□□□□□ -1.4
VPS35-208ENST00000568612 PPP1R3GB7ZBB8 358 aa6.27□□□□□ -1.41
VPS35-208ENST00000568612 TULP1O00294 542 aaPredicted RBP6.27□□□□□ -1.41
VPS35-208ENST00000568612 ADGRD1Q6QNK2 874 aa6.27□□□□□ -1.41
VPS35-208ENST00000568612 NUTM2FA1L443 756 aa6.26□□□□□ -1.41
VPS35-208ENST00000568612 TESPA1A2RU30 521 aaPredicted RBP6.26□□□□□ -1.41
VPS35-208ENST00000568612 SPNS2Q8IVW8 549 aa6.26□□□□□ -1.41
VPS35-208ENST00000568612 CDHR5Q9HBB8 845 aa6.26□□□□□ -1.41
VPS35-208ENST00000568612 PROX2Q3B8N5 592 aa6.25□□□□□ -1.41
VPS35-208ENST00000568612 ZBED2Q9BTP6 218 aa6.25□□□□□ -1.41
VPS35-208ENST00000568612 RBM26Q5T8P6 1007 aaKnown RBP6.24□□□□□ -1.41
VPS35-208ENST00000568612 VPS9D1Q9Y2B5 631 aa6.24□□□□□ -1.41
VPS35-208ENST00000568612 TK2O00142 265 aa6.23□□□□□ -1.41
VPS35-208ENST00000568612 CERKQ8TCT0 537 aa6.22□□□□□ -1.41
VPS35-208ENST00000568612 MYT1LQ9UL68 1186 aa6.22□□□□□ -1.41
VPS35-208ENST00000568612 GOLGA8CPA6NN73 597 aa6.21□□□□□ -1.42
VPS35-208ENST00000568612 TRIM6-TRIM34B2RNG4 842 aa6.21□□□□□ -1.42
VPS35-208ENST00000568612 MRPL50Q8N5N7 158 aaKnown RBP6.21□□□□□ -1.42
VPS35-208ENST00000568612 CDCA7LQ96GN5 454 aa6.21□□□□□ -1.42
VPS35-208ENST00000568612 SLC4A5Q9BY07 1137 aa6.21□□□□□ -1.42
VPS35-208ENST00000568612 NBPF3Q9H094 633 aa6.21□□□□□ -1.42
VPS35-208ENST00000568612 KIAA1468Q9P260 1216 aa6.21□□□□□ -1.42
VPS35-208ENST00000568612 PRSS12P56730 875 aa6.2□□□□□ -1.42
VPS35-208ENST00000568612 MMRN1Q13201 1228 aa6.2□□□□□ -1.42
VPS35-208ENST00000568612 PACS2Q86VP3 889 aa6.2□□□□□ -1.42
VPS35-208ENST00000568612 RABGEF1Q9UJ41 708 aa6.2□□□□□ -1.42
VPS35-208ENST00000568612 HRO43593 1189 aa6.19□□□□□ -1.42
VPS35-208ENST00000568612 FCHSD2O94868 740 aa6.19□□□□□ -1.42
VPS35-208ENST00000568612 PADI6Q6TGC4 694 aa6.19□□□□□ -1.42
VPS35-208ENST00000568612 GPIHBP1Q8IV16 184 aa6.19□□□□□ -1.42
VPS35-208ENST00000568612 RNF166Q96A37 237 aaPredicted RBP6.19□□□□□ -1.42
VPS35-208ENST00000568612 SEPT9Q9UHD8 586 aaPredicted RBP6.19□□□□□ -1.42
VPS35-208ENST00000568612 TSKSQ9UJT2 592 aa6.19□□□□□ -1.42
VPS35-208ENST00000568612 PTGDRQ13258 359 aa6.18□□□□□ -1.42
VPS35-208ENST00000568612 KCTD12Q96CX2 325 aaKnown RBP6.18□□□□□ -1.42
VPS35-208ENST00000568612 NPDC1Q9NQX5 325 aaPredicted RBP6.18□□□□□ -1.42
VPS35-208ENST00000568612 PNMA3Q9UL41 463 aa6.18□□□□□ -1.42
VPS35-208ENST00000568612 NBPF26B4DH59 902 aa6.17□□□□□ -1.42
VPS35-208ENST00000568612 SMAPO00193 183 aa6.17□□□□□ -1.42
VPS35-208ENST00000568612 BHMG1C9JSJ3 638 aaPredicted RBP6.16□□□□□ -1.42
VPS35-208ENST00000568612 ONECUT3O60422 494 aaPredicted RBP6.16□□□□□ -1.42
VPS35-208ENST00000568612 LMOD2Q6P5Q4 547 aa6.16□□□□□ -1.42
VPS35-208ENST00000568612 FAM198AQ9UFP1 575 aa6.16□□□□□ -1.42
VPS35-208ENST00000568612 NUDT18Q6ZVK8 323 aa6.15□□□□□ -1.42
VPS35-208ENST00000568612 WNT2BQ93097 391 aa6.15□□□□□ -1.42
VPS35-208ENST00000568612 BCANQ96GW7 911 aa6.15□□□□□ -1.42
VPS35-208ENST00000568612 RBM27Q9P2N5 1060 aaKnown RBP6.15□□□□□ -1.42
VPS35-208ENST00000568612 HIC1Q14526 733 aa6.14□□□□□ -1.43
VPS35-208ENST00000568612 FAM161AQ3B820 660 aa6.14□□□□□ -1.43
VPS35-208ENST00000568612 DHX30Q7L2E3 1194 aaKnown RBP eCLIP6.14□□□□□ -1.43
VPS35-208ENST00000568612 TATDN2Q93075 761 aa6.14□□□□□ -1.43
VPS35-208ENST00000568612 GNPATO15228 680 aa6.13□□□□□ -1.43
VPS35-208ENST00000568612 PTPN5P54829 565 aa6.13□□□□□ -1.43
VPS35-208ENST00000568612 FAM98CQ17RN3 349 aaKnown RBP6.13□□□□□ -1.43
VPS35-208ENST00000568612 LAPTM4BQ86VI4 370 aa6.13□□□□□ -1.43
VPS35-208ENST00000568612 ANKK1Q8NFD2 765 aa6.13□□□□□ -1.43
VPS35-208ENST00000568612 ZFRQ96KR1 1074 aaKnown RBP6.13□□□□□ -1.43
VPS35-208ENST00000568612 C3orf80F5H4A9 247 aa6.12□□□□□ -1.43
VPS35-208ENST00000568612 RNF40O75150 1001 aa6.12□□□□□ -1.43
VPS35-208ENST00000568612 HDGFP51858 240 aaKnown RBP6.12□□□□□ -1.43
VPS35-208ENST00000568612 FECHP22830 423 aa6.11□□□□□ -1.43
VPS35-208ENST00000568612 RBM46Q8TBY0 533 aaKnown RBP6.11□□□□□ -1.43
VPS35-208ENST00000568612 GPR37O15354 613 aa6.1□□□□□ -1.43
VPS35-208ENST00000568612 BCAMP50895 628 aa6.1□□□□□ -1.43
VPS35-208ENST00000568612 TTC13Q8NBP0 860 aa6.1□□□□□ -1.43
VPS35-208ENST00000568612 LRCH3Q96II8 777 aa6.1□□□□□ -1.43
VPS35-208ENST00000568612 THSD4Q6ZMP0 1018 aa6.09□□□□□ -1.43
VPS35-208ENST00000568612 SAMD7Q7Z3H4 446 aa6.09□□□□□ -1.43
VPS35-208ENST00000568612 KRI1Q8N9T8 703 aaKnown RBP6.09□□□□□ -1.43
VPS35-208ENST00000568612 CDKN2AIPQ9NXV6 580 aaPredicted RBP6.09□□□□□ -1.43
VPS35-208ENST00000568612 HCSTQ9UBK5 93 aa6.09□□□□□ -1.43
VPS35-208ENST00000568612 ADGRG1Q9Y653 693 aa6.09□□□□□ -1.43
VPS35-208ENST00000568612 SOWAHBA6NEL2 793 aa6.07□□□□□ -1.44
VPS35-208ENST00000568612 OATP04181 439 aa6.07□□□□□ -1.44
VPS35-208ENST00000568612 DNAJB2P25686 324 aa6.07□□□□□ -1.44
VPS35-208ENST00000568612 SLC4A3P48751 1232 aa6.07□□□□□ -1.44
VPS35-208ENST00000568612 SWT1Q5T5J6 900 aaKnown RBP6.07□□□□□ -1.44
VPS35-208ENST00000568612 EYA1Q99502 592 aa6.07□□□□□ -1.44
VPS35-208ENST00000568612 HPS5Q9UPZ3 1129 aa6.07□□□□□ -1.44
VPS35-208ENST00000568612 RCCD1A6NED2 376 aa6.06□□□□□ -1.44
VPS35-208ENST00000568612 MAP2K5Q13163 448 aa6.06□□□□□ -1.44
VPS35-208ENST00000568612 ZC3H15Q8WU90 426 aaKnown RBP6.06□□□□□ -1.44
VPS35-208ENST00000568612 PPP4CP60510 307 aa6.05□□□□□ -1.44
VPS35-208ENST00000568612 METTL3Q86U44 580 aaKnown RBP6.05□□□□□ -1.44
VPS35-208ENST00000568612 PXYLP1Q8TE99 480 aa6.05□□□□□ -1.44
VPS35-208ENST00000568612 NLRP7Q8WX94 980 aa6.05□□□□□ -1.44
VPS35-208ENST00000568612 TSR3Q9UJK0 312 aaKnown RBP6.05□□□□□ -1.44
VPS35-208ENST00000568612 SLF2Q8IX21 1173 aa6.04□□□□□ -1.44
Retrieved 100 of 20,778 RNA–protein pairs in 373.2 ms