RNA–Protein interactions for RNA: ENST00000565815.1

LINC00561-201, long intergenic non-protein coding RNA 561, humanhuman

BASIC

Gene LINC00561, Length 2,738 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00561-201ENST00000565815 C3orf80F5H4A9 247 aa8.46□□□□□ -1.05
LINC00561-201ENST00000565815 PARP9Q8IXQ6 854 aa8.46□□□□□ -1.05
LINC00561-201ENST00000565815 MAP2K5Q13163 448 aa8.46□□□□□ -1.06
LINC00561-201ENST00000565815 PHF14O94880 888 aa8.45□□□□□ -1.06
LINC00561-201ENST00000565815 GTF3C3Q9Y5Q9 886 aa8.45□□□□□ -1.06
LINC00561-201ENST00000565815 FOSBP53539 338 aa8.45□□□□□ -1.06
LINC00561-201ENST00000565815 HIC1Q14526 733 aa8.45□□□□□ -1.06
LINC00561-201ENST00000565815 FCHSD2O94868 740 aa8.45□□□□□ -1.06
LINC00561-201ENST00000565815 TMEM132AQ24JP5 1023 aa8.44□□□□□ -1.06
LINC00561-201ENST00000565815 COL9A1P20849 921 aa8.43□□□□□ -1.06
LINC00561-201ENST00000565815 JPH4Q96JJ6 628 aa8.43□□□□□ -1.06
LINC00561-201ENST00000565815 SCUBE2Q9NQ36 999 aa8.43□□□□□ -1.06
LINC00561-201ENST00000565815 PADI6Q6TGC4 694 aa8.42□□□□□ -1.06
LINC00561-201ENST00000565815 C6orf132Q5T0Z8 1188 aa8.42□□□□□ -1.06
LINC00561-201ENST00000565815 FAM198AQ9UFP1 575 aa8.42□□□□□ -1.06
LINC00561-201ENST00000565815 MS4A1P11836 297 aa8.41□□□□□ -1.06
LINC00561-201ENST00000565815 ZNF710Q8N1W2 664 aa8.41□□□□□ -1.06
LINC00561-201ENST00000565815 PLEKHG3A1L390 1219 aa8.4□□□□□ -1.06
LINC00561-201ENST00000565815 ZNF316A6NFI3 1004 aaPredicted RBP8.4□□□□□ -1.06
LINC00561-201ENST00000565815 TTLL12Q14166 644 aaPredicted RBP8.4□□□□□ -1.06
LINC00561-201ENST00000565815 TYW1BQ6NUM6 668 aa8.4□□□□□ -1.06
LINC00561-201ENST00000565815 MINK1Q8N4C8 1332 aaPredicted RBP8.4□□□□□ -1.07
LINC00561-201ENST00000565815 DOK7Q18PE1 504 aa8.39□□□□□ -1.07
LINC00561-201ENST00000565815 ZDHHC16Q969W1 377 aa8.39□□□□□ -1.07
LINC00561-201ENST00000565815 MARVELD3Q96A59 401 aa8.38□□□□□ -1.07
LINC00561-201ENST00000565815 MDM2Q00987 491 aaPredicted RBP8.38□□□□□ -1.07
LINC00561-201ENST00000565815 GIGYF2Q6Y7W6 1299 aaKnown RBP8.37□□□□□ -1.07
LINC00561-201ENST00000565815 EPAS1Q99814 870 aa8.37□□□□□ -1.07
LINC00561-201ENST00000565815 AMHR2Q16671 573 aa8.36□□□□□ -1.07
LINC00561-201ENST00000565815 PROX2Q3B8N5 592 aa8.36□□□□□ -1.07
LINC00561-201ENST00000565815 AXIN2Q9Y2T1 843 aa8.36□□□□□ -1.07
LINC00561-201ENST00000565815 SMAPO00193 183 aa8.36□□□□□ -1.07
LINC00561-201ENST00000565815 POTEEQ6S8J3 1075 aa8.36□□□□□ -1.07
LINC00561-201ENST00000565815 TSKSQ9UJT2 592 aa8.35□□□□□ -1.07
LINC00561-201ENST00000565815 METTL3Q86U44 580 aaKnown RBP8.35□□□□□ -1.07
LINC00561-201ENST00000565815 PSEN2P49810 448 aa8.34□□□□□ -1.07
LINC00561-201ENST00000565815 CDCA7LQ96GN5 454 aa8.33□□□□□ -1.08
LINC00561-201ENST00000565815 FBXW7Q969H0 707 aa8.32□□□□□ -1.08
LINC00561-201ENST00000565815 ADGRG1Q9Y653 693 aa8.32□□□□□ -1.08
LINC00561-201ENST00000565815 RIMBP2O15034 1052 aa8.32□□□□□ -1.08
LINC00561-201ENST00000565815 LHX8Q68G74 356 aa8.32□□□□□ -1.08
LINC00561-201ENST00000565815 KCNK17Q96T54 332 aa8.31□□□□□ -1.08
LINC00561-201ENST00000565815 RB1CC1Q8TDY2 1594 aa8.31□□□□□ -1.08
LINC00561-201ENST00000565815 HOXB1P14653 301 aaPredicted RBP8.31□□□□□ -1.08
LINC00561-201ENST00000565815 PXYLP1Q8TE99 480 aa8.3□□□□□ -1.08
LINC00561-201ENST00000565815 ST18O60284 1047 aa8.3□□□□□ -1.08
LINC00561-201ENST00000565815 POTEB3A0JP26 581 aa8.29□□□□□ -1.08
LINC00561-201ENST00000565815 VARS2Q5ST30 1063 aaKnown RBP8.29□□□□□ -1.08
LINC00561-201ENST00000565815 POTEBQ6S5H4 581 aa8.29□□□□□ -1.08
LINC00561-201ENST00000565815 PRSS12P56730 875 aa8.29□□□□□ -1.08
LINC00561-201ENST00000565815 FBXO31Q5XUX0 539 aaPredicted RBP8.29□□□□□ -1.08
LINC00561-201ENST00000565815 MAMSTRQ6ZN01 415 aa8.29□□□□□ -1.08
LINC00561-201ENST00000565815 BCL2L12Q9HB09 334 aa8.29□□□□□ -1.08
LINC00561-201ENST00000565815 ZSWIM6Q9HCJ5 1215 aa8.29□□□□□ -1.08
LINC00561-201ENST00000565815 TTC13Q8NBP0 860 aa8.28□□□□□ -1.08
LINC00561-201ENST00000565815 TMUB1Q9BVT8 246 aa8.28□□□□□ -1.08
LINC00561-201ENST00000565815 PPP4R3BQ5MIZ7 849 aa8.27□□□□□ -1.09
LINC00561-201ENST00000565815 LCE2DQ5TA82 110 aaPredicted RBP8.27□□□□□ -1.09
LINC00561-201ENST00000565815 NUDT18Q6ZVK8 323 aa8.27□□□□□ -1.09
LINC00561-201ENST00000565815 DMRTA1Q5VZB9 504 aa8.26□□□□□ -1.09
LINC00561-201ENST00000565815 GPCPD1Q9NPB8 672 aa8.25□□□□□ -1.09
LINC00561-201ENST00000565815 SEPT9Q9UHD8 586 aaPredicted RBP8.25□□□□□ -1.09
LINC00561-201ENST00000565815 SSTR3P32745 418 aaPredicted RBP8.24□□□□□ -1.09
LINC00561-201ENST00000565815 PTPREP23469 700 aa8.24□□□□□ -1.09
LINC00561-201ENST00000565815 BEGAINQ9BUH8 593 aa8.24□□□□□ -1.09
LINC00561-201ENST00000565815 FAM205CA6NFA0 338 aa8.23□□□□□ -1.09
LINC00561-201ENST00000565815 FAM217BQ9NTX9 383 aaPredicted RBP8.23□□□□□ -1.09
LINC00561-201ENST00000565815 RCCD1A6NED2 376 aa8.23□□□□□ -1.09
LINC00561-201ENST00000565815 EYA1Q99502 592 aa8.23□□□□□ -1.09
LINC00561-201ENST00000565815 PPP1R3GB7ZBB8 358 aa8.23□□□□□ -1.09
LINC00561-201ENST00000565815 C14orf37Q86TY3 774 aa8.23□□□□□ -1.09
LINC00561-201ENST00000565815 POLR3EQ9NVU0 708 aa8.22□□□□□ -1.09
LINC00561-201ENST00000565815 PNMA3Q9UL41 463 aa8.22□□□□□ -1.09
LINC00561-201ENST00000565815 NACADO15069 1562 aa8.22□□□□□ -1.09
LINC00561-201ENST00000565815 PROCA1Q8NCQ7 364 aaPredicted RBP8.22□□□□□ -1.09
LINC00561-201ENST00000565815 ERBB3P21860 1342 aa8.21□□□□□ -1.1
LINC00561-201ENST00000565815 EMP3P54852 163 aa8.21□□□□□ -1.1
LINC00561-201ENST00000565815 TRIM6-TRIM34B2RNG4 842 aa8.2□□□□□ -1.1
LINC00561-201ENST00000565815 CLCN1P35523 988 aa8.2□□□□□ -1.1
LINC00561-201ENST00000565815 FAM163AQ96GL9 167 aaPredicted RBP8.2□□□□□ -1.1
LINC00561-201ENST00000565815 ZBED2Q9BTP6 218 aa8.2□□□□□ -1.1
LINC00561-201ENST00000565815 TATDN2Q93075 761 aa8.19□□□□□ -1.1
LINC00561-201ENST00000565815 HLA-CQ95604 372 aa8.19□□□□□ -1.1
LINC00561-201ENST00000565815 DDRGK1Q96HY6 314 aa8.19□□□□□ -1.1
LINC00561-201ENST00000565815 KIAA1468Q9P260 1216 aa8.19□□□□□ -1.1
LINC00561-201ENST00000565815 CERKQ8TCT0 537 aa8.19□□□□□ -1.1
LINC00561-201ENST00000565815 SUPT5HO00267 1087 aaKnown RBP8.18□□□□□ -1.1
LINC00561-201ENST00000565815 DDX11L8A8MPP1 907 aa8.18□□□□□ -1.1
LINC00561-201ENST00000565815 RBM27Q9P2N5 1060 aaKnown RBP8.18□□□□□ -1.1
LINC00561-201ENST00000565815 SNPHO15079 494 aa8.17□□□□□ -1.1
LINC00561-201ENST00000565815 ONECUT3O60422 494 aaPredicted RBP8.17□□□□□ -1.1
LINC00561-201ENST00000565815 OATP04181 439 aa8.17□□□□□ -1.1
LINC00561-201ENST00000565815 MYSM1Q5VVJ2 828 aa8.16□□□□□ -1.1
LINC00561-201ENST00000565815 HS3ST6Q96QI5 342 aa8.16□□□□□ -1.1
LINC00561-201ENST00000565815 RBM46Q8TBY0 533 aaKnown RBP8.16□□□□□ -1.1
LINC00561-201ENST00000565815 CSPP1Q1MSJ5 1256 aa8.15□□□□□ -1.1
LINC00561-201ENST00000565815 LIMD1Q9UGP4 676 aa8.15□□□□□ -1.1
LINC00561-201ENST00000565815 GUCA2AQ02747 115 aa8.15□□□□□ -1.11
LINC00561-201ENST00000565815 TMEM134Q9H6X4 195 aa8.14□□□□□ -1.11
LINC00561-201ENST00000565815 TBC1D2Q9BYX2 928 aa8.13□□□□□ -1.11
Retrieved 100 of 20,778 RNA–protein pairs in 16.7 ms