RNA–Protein interactions for RNA: ENST00000564641.1

CHD9-212, Transcript of chromodomain helicase DNA binding protein 9, humanhuman

TSL 4

Gene CHD9, Length 589 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHD9-212ENST00000564641 PPP1R3GB7ZBB8 358 aa12.07□□□□□ -0.48
CHD9-212ENST00000564641 ZBED2Q9BTP6 218 aa12.06□□□□□ -0.48
CHD9-212ENST00000564641 PLCB2Q00722 1185 aa12.05□□□□□ -0.48
CHD9-212ENST00000564641 DDX12PQ92771 950 aa12.04□□□□□ -0.48
CHD9-212ENST00000564641 C6orf132Q5T0Z8 1188 aa12.01□□□□□ -0.49
CHD9-212ENST00000564641 NBPF3Q9H094 633 aa12.01□□□□□ -0.49
CHD9-212ENST00000564641 NBR1Q14596 966 aa12□□□□□ -0.49
CHD9-212ENST00000564641 ARHGEF1Q92888 912 aaKnown RBP12□□□□□ -0.49
CHD9-212ENST00000564641 HCSTQ9UBK5 93 aa12□□□□□ -0.49
CHD9-212ENST00000564641 BHMG1C9JSJ3 638 aaPredicted RBP11.99□□□□□ -0.49
CHD9-212ENST00000564641 EN1Q05925 392 aaPredicted RBP11.99□□□□□ -0.49
CHD9-212ENST00000564641 ONECUT3O60422 494 aaPredicted RBP11.98□□□□□ -0.49
CHD9-212ENST00000564641 MRPL50Q8N5N7 158 aaKnown RBP11.98□□□□□ -0.49
CHD9-212ENST00000564641 RABGEF1Q9UJ41 708 aa11.98□□□□□ -0.49
CHD9-212ENST00000564641 P3H3Q8IVL6 736 aa11.97□□□□□ -0.49
CHD9-212ENST00000564641 COL9A1P20849 921 aa11.96□□□□□ -0.49
CHD9-212ENST00000564641 RBM33Q96EV2 1170 aaKnown RBP11.96□□□□□ -0.49
CHD9-212ENST00000564641 GOLGA8CPA6NN73 597 aa11.95□□□□□ -0.5
CHD9-212ENST00000564641 MAP3K7O43318 606 aa11.95□□□□□ -0.5
CHD9-212ENST00000564641 GRXCR2A6NFK2 248 aa11.93□□□□□ -0.5
CHD9-212ENST00000564641 CERKQ8TCT0 537 aa11.93□□□□□ -0.5
CHD9-212ENST00000564641 KCTD12Q96CX2 325 aaKnown RBP11.93□□□□□ -0.5
CHD9-212ENST00000564641 PROX2Q3B8N5 592 aa11.91□□□□□ -0.5
CHD9-212ENST00000564641 LAPTM4BQ86VI4 370 aa11.91□□□□□ -0.5
CHD9-212ENST00000564641 KCNV2Q8TDN2 545 aa11.91□□□□□ -0.5
CHD9-212ENST00000564641 TRIM6-TRIM34B2RNG4 842 aa11.89□□□□□ -0.51
CHD9-212ENST00000564641 OSBPP22059 807 aa11.88□□□□□ -0.51
CHD9-212ENST00000564641 TSR1Q2NL82 804 aaKnown RBP11.88□□□□□ -0.51
CHD9-212ENST00000564641 WNT2BQ93097 391 aa11.88□□□□□ -0.51
CHD9-212ENST00000564641 KIAA1468Q9P260 1216 aa11.88□□□□□ -0.51
CHD9-212ENST00000564641 PACS2Q86VP3 889 aa11.86□□□□□ -0.51
CHD9-212ENST00000564641 THSD4Q6ZMP0 1018 aa11.84□□□□□ -0.51
CHD9-212ENST00000564641 ANKK1Q8NFD2 765 aa11.84□□□□□ -0.51
CHD9-212ENST00000564641 HAP1P54257 671 aaPredicted RBP11.82□□□□□ -0.52
CHD9-212ENST00000564641 PRSS12P56730 875 aa11.82□□□□□ -0.52
CHD9-212ENST00000564641 CDCA7LQ96GN5 454 aa11.82□□□□□ -0.52
CHD9-212ENST00000564641 RBM27Q9P2N5 1060 aaKnown RBP11.82□□□□□ -0.52
CHD9-212ENST00000564641 FAM98CQ17RN3 349 aaKnown RBP11.81□□□□□ -0.52
CHD9-212ENST00000564641 PRIM1P49642 420 aaKnown RBP11.8□□□□□ -0.52
CHD9-212ENST00000564641 PTPN5P54829 565 aa11.8□□□□□ -0.52
CHD9-212ENST00000564641 ZFRQ96KR1 1074 aaKnown RBP11.79□□□□□ -0.52
CHD9-212ENST00000564641 PLA2G2EQ9NZK7 142 aa11.78□□□□□ -0.52
CHD9-212ENST00000564641 TSKSQ9UJT2 592 aa11.78□□□□□ -0.52
CHD9-212ENST00000564641 MLLT3P42568 568 aaPredicted RBP11.76□□□□□ -0.53
CHD9-212ENST00000564641 SEPT9Q9UHD8 586 aaPredicted RBP11.76□□□□□ -0.53
CHD9-212ENST00000564641 SOWAHBA6NEL2 793 aa11.75□□□□□ -0.53
CHD9-212ENST00000564641 NBPF26B4DH59 902 aa11.75□□□□□ -0.53
CHD9-212ENST00000564641 NYAP1Q6ZVC0 841 aa11.75□□□□□ -0.53
CHD9-212ENST00000564641 CDHR5Q9HBB8 845 aa11.74□□□□□ -0.53
CHD9-212ENST00000564641 SMYD5Q6GMV2 418 aa11.71□□□□□ -0.53
CHD9-212ENST00000564641 TATDN2Q93075 761 aa11.71□□□□□ -0.53
CHD9-212ENST00000564641 LRCH3Q96II8 777 aa11.71□□□□□ -0.53
CHD9-212ENST00000564641 NPDC1Q9NQX5 325 aaPredicted RBP11.71□□□□□ -0.53
CHD9-212ENST00000564641 VSIG10Q8N0Z9 540 aa11.7□□□□□ -0.54
CHD9-212ENST00000564641 CDKN2AIPQ9NXV6 580 aaPredicted RBP11.7□□□□□ -0.54
CHD9-212ENST00000564641 SEMA3EO15041 775 aa11.69□□□□□ -0.54
CHD9-212ENST00000564641 BCAMP50895 628 aa11.69□□□□□ -0.54
CHD9-212ENST00000564641 TTC13Q8NBP0 860 aa11.69□□□□□ -0.54
CHD9-212ENST00000564641 PNMA3Q9UL41 463 aa11.69□□□□□ -0.54
CHD9-212ENST00000564641 HDGFP51858 240 aaKnown RBP11.68□□□□□ -0.54
CHD9-212ENST00000564641 IFFO2Q5TF58 517 aa11.68□□□□□ -0.54
CHD9-212ENST00000564641 FAM198AQ9UFP1 575 aa11.68□□□□□ -0.54
CHD9-212ENST00000564641 TSR3Q9UJK0 312 aaKnown RBP11.67□□□□□ -0.54
CHD9-212ENST00000564641 PTGDRQ13258 359 aa11.66□□□□□ -0.54
CHD9-212ENST00000564641 KDM2AQ9Y2K7 1162 aa11.66□□□□□ -0.54
CHD9-212ENST00000564641 PADI6Q6TGC4 694 aa11.65□□□□□ -0.54
CHD9-212ENST00000564641 NUDT18Q6ZVK8 323 aa11.65□□□□□ -0.54
CHD9-212ENST00000564641 NUTM2FA1L443 756 aa11.64□□□□□ -0.55
CHD9-212ENST00000564641 TESPA1A2RU30 521 aaPredicted RBP11.64□□□□□ -0.55
CHD9-212ENST00000564641 SMAPO00193 183 aa11.64□□□□□ -0.55
CHD9-212ENST00000564641 NECTIN2Q92692 538 aa11.63□□□□□ -0.55
CHD9-212ENST00000564641 FCHSD2O94868 740 aa11.62□□□□□ -0.55
CHD9-212ENST00000564641 WBP1LQ9NX94 342 aa11.62□□□□□ -0.55
CHD9-212ENST00000564641 HPS5Q9UPZ3 1129 aa11.62□□□□□ -0.55
CHD9-212ENST00000564641 PPP4CP60510 307 aa11.61□□□□□ -0.55
CHD9-212ENST00000564641 SAMD7Q7Z3H4 446 aa11.61□□□□□ -0.55
CHD9-212ENST00000564641 SLC4A3P48751 1232 aa11.6□□□□□ -0.55
CHD9-212ENST00000564641 ITGBL1O95965 494 aaPredicted RBP11.59□□□□□ -0.55
CHD9-212ENST00000564641 C3orf80F5H4A9 247 aa11.58□□□□□ -0.56
CHD9-212ENST00000564641 RBM46Q8TBY0 533 aaKnown RBP11.57□□□□□ -0.56
CHD9-212ENST00000564641 EYA1Q99502 592 aa11.57□□□□□ -0.56
CHD9-212ENST00000564641 SLF2Q8IX21 1173 aa11.56□□□□□ -0.56
CHD9-212ENST00000564641 HIC1Q14526 733 aa11.55□□□□□ -0.56
CHD9-212ENST00000564641 TULP1O00294 542 aaPredicted RBP11.54□□□□□ -0.56
CHD9-212ENST00000564641 ADGRG1Q9Y653 693 aa11.53□□□□□ -0.56
CHD9-212ENST00000564641 RGS20O76081 388 aa11.52□□□□□ -0.57
CHD9-212ENST00000564641 DNAJB2P25686 324 aa11.52□□□□□ -0.57
CHD9-212ENST00000564641 KCNC4Q03721 635 aa11.52□□□□□ -0.57
CHD9-212ENST00000564641 RBM26Q5T8P6 1007 aaKnown RBP11.52□□□□□ -0.57
CHD9-212ENST00000564641 RNF40O75150 1001 aa11.51□□□□□ -0.57
CHD9-212ENST00000564641 OATP04181 439 aa11.51□□□□□ -0.57
CHD9-212ENST00000564641 SWT1Q5T5J6 900 aaKnown RBP11.51□□□□□ -0.57
CHD9-212ENST00000564641 A0A0G2JS52 829 aa11.49□□□□□ -0.57
CHD9-212ENST00000564641 PRR14Q9BWN1 585 aa11.49□□□□□ -0.57
CHD9-212ENST00000564641 GNPATO15228 680 aa11.47□□□□□ -0.57
CHD9-212ENST00000564641 TMEM134Q9H6X4 195 aa11.47□□□□□ -0.57
CHD9-212ENST00000564641 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP11.46□□□□□ -0.57
CHD9-212ENST00000564641 RCCD1A6NED2 376 aa11.44□□□□□ -0.58
CHD9-212ENST00000564641 GPIHBP1Q8IV16 184 aa11.44□□□□□ -0.58
CHD9-212ENST00000564641 IL21Q9HBE4 155 aa11.43□□□□□ -0.58
Retrieved 100 of 20,778 RNA–protein pairs in 18.1 ms