RNA–Protein interactions for RNA: ENST00000563984.1

VPS35-205, Transcript of VPS35, retromer complex component, humanhuman

TSL 2

Gene VPS35, Length 775 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-205ENST00000563984 PROX2Q3B8N5 592 aa11.21□□□□□ -0.61
VPS35-205ENST00000563984 EVI5O60447 810 aa11.2□□□□□ -0.62
VPS35-205ENST00000563984 NYAP1Q6ZVC0 841 aa11.2□□□□□ -0.62
VPS35-205ENST00000563984 CRISPLD2Q9H0B8 497 aa11.2□□□□□ -0.62
VPS35-205ENST00000563984 PPP1R3GB7ZBB8 358 aa11.19□□□□□ -0.62
VPS35-205ENST00000563984 PPP1R15BQ5SWA1 713 aa11.19□□□□□ -0.62
VPS35-205ENST00000563984 WBP1LQ9NX94 342 aa11.19□□□□□ -0.62
VPS35-205ENST00000563984 PAXIP1Q6ZW49 1069 aaPredicted RBP11.18□□□□□ -0.62
VPS35-205ENST00000563984 COL9A1P20849 921 aa11.17□□□□□ -0.62
VPS35-205ENST00000563984 LAPTM4BQ86VI4 370 aa11.17□□□□□ -0.62
VPS35-205ENST00000563984 CFAP44Q96MT7 982 aa11.16□□□□□ -0.62
VPS35-205ENST00000563984 ZFRQ96KR1 1074 aaKnown RBP11.15□□□□□ -0.62
VPS35-205ENST00000563984 NCKAP5LQ9HCH0 1330 aa11.14□□□□□ -0.63
VPS35-205ENST00000563984 PDE4AP27815 886 aa11.11□□□□□ -0.63
VPS35-205ENST00000563984 KIAA1468Q9P260 1216 aa11.11□□□□□ -0.63
VPS35-205ENST00000563984 PCDHGA10Q9Y5H3 936 aa11.11□□□□□ -0.63
VPS35-205ENST00000563984 NRG2O14511 850 aaPredicted RBP11.09□□□□□ -0.63
VPS35-205ENST00000563984 CADPS2Q86UW7 1296 aa11.09□□□□□ -0.63
VPS35-205ENST00000563984 LARP6Q9BRS8 491 aaKnown RBP11.09□□□□□ -0.63
VPS35-205ENST00000563984 ZNF787Q6DD87 383 aa11.06□□□□□ -0.64
VPS35-205ENST00000563984 SEPT9Q9UHD8 586 aaPredicted RBP11.06□□□□□ -0.64
VPS35-205ENST00000563984 ONECUT3O60422 494 aaPredicted RBP11.05□□□□□ -0.64
VPS35-205ENST00000563984 PRKD2Q9BZL6 878 aa11.05□□□□□ -0.64
VPS35-205ENST00000563984 TSR3Q9UJK0 312 aaKnown RBP11.05□□□□□ -0.64
VPS35-205ENST00000563984 MAP3K9P80192 1104 aa11.03□□□□□ -0.64
VPS35-205ENST00000563984 ZNF775Q96BV0 537 aaPredicted RBP11.03□□□□□ -0.64
VPS35-205ENST00000563984 DDX27Q96GQ7 796 aaKnown RBP11.03□□□□□ -0.64
VPS35-205ENST00000563984 HPS5Q9UPZ3 1129 aa11.02□□□□□ -0.65
VPS35-205ENST00000563984 MFSD10Q14728 455 aa11.01□□□□□ -0.65
VPS35-205ENST00000563984 TYW1BQ6NUM6 668 aa11.01□□□□□ -0.65
VPS35-205ENST00000563984 FBXW7Q969H0 707 aa11.01□□□□□ -0.65
VPS35-205ENST00000563984 CDKN2AIPQ9NXV6 580 aaPredicted RBP11.01□□□□□ -0.65
VPS35-205ENST00000563984 FAM98CQ17RN3 349 aaKnown RBP11□□□□□ -0.65
VPS35-205ENST00000563984 PHF14O94880 888 aa10.99□□□□□ -0.65
VPS35-205ENST00000563984 PLCB2Q00722 1185 aa10.99□□□□□ -0.65
VPS35-205ENST00000563984 TJAP1Q5JTD0 557 aa10.98□□□□□ -0.65
VPS35-205ENST00000563984 LRCH3Q96II8 777 aa10.98□□□□□ -0.65
VPS35-205ENST00000563984 EMILIN3Q9NT22 766 aa10.98□□□□□ -0.65
VPS35-205ENST00000563984 TRIM6-TRIM34B2RNG4 842 aa10.97□□□□□ -0.65
VPS35-205ENST00000563984 V9GY48 417 aaPredicted RBP10.97□□□□□ -0.65
VPS35-205ENST00000563984 C6orf132Q5T0Z8 1188 aa10.96□□□□□ -0.65
VPS35-205ENST00000563984 PPP1R18Q6NYC8 613 aa10.95□□□□□ -0.66
VPS35-205ENST00000563984 TSHZ2Q9NRE2 1034 aa10.93□□□□□ -0.66
VPS35-205ENST00000563984 PDZRN3Q9UPQ7 1066 aa10.91□□□□□ -0.66
VPS35-205ENST00000563984 PPP4CP60510 307 aa10.89□□□□□ -0.67
VPS35-205ENST00000563984 WDR70Q9NW82 654 aa10.89□□□□□ -0.67
VPS35-205ENST00000563984 CAMK2BQ13554 666 aa10.87□□□□□ -0.67
VPS35-205ENST00000563984 MTRQ99707 1265 aa10.87□□□□□ -0.67
VPS35-205ENST00000563984 EPAS1Q99814 870 aa10.87□□□□□ -0.67
VPS35-205ENST00000563984 EIF4ENIF1Q9NRA8 985 aaKnown RBP10.87□□□□□ -0.67
VPS35-205ENST00000563984 IL21Q9HBE4 155 aa10.86□□□□□ -0.67
VPS35-205ENST00000563984 DPYSL4O14531 572 aa10.84□□□□□ -0.67
VPS35-205ENST00000563984 ZNF516Q92618 1163 aa10.84□□□□□ -0.67
VPS35-205ENST00000563984 TSKSQ9UJT2 592 aa10.84□□□□□ -0.67
VPS35-205ENST00000563984 E2F4Q16254 413 aa10.81□□□□□ -0.68
VPS35-205ENST00000563984 SAMD7Q7Z3H4 446 aa10.81□□□□□ -0.68
VPS35-205ENST00000563984 RBM33Q96EV2 1170 aaKnown RBP10.81□□□□□ -0.68
VPS35-205ENST00000563984 HAP1P54257 671 aaPredicted RBP10.8□□□□□ -0.68
VPS35-205ENST00000563984 PACS2Q86VP3 889 aa10.8□□□□□ -0.68
VPS35-205ENST00000563984 NKX2-3Q8TAU0 364 aa10.78□□□□□ -0.68
VPS35-205ENST00000563984 POTECB2RU33 542 aa10.77□□□□□ -0.69
VPS35-205ENST00000563984 TRIM67Q6ZTA4 783 aa10.77□□□□□ -0.69
VPS35-205ENST00000563984 SMAPO00193 183 aa10.76□□□□□ -0.69
VPS35-205ENST00000563984 ARIH1Q9Y4X5 557 aaPredicted RBP10.75□□□□□ -0.69
VPS35-205ENST00000563984 DDX12PQ92771 950 aa10.74□□□□□ -0.69
VPS35-205ENST00000563984 MYT1Q01538 1121 aa10.73□□□□□ -0.69
VPS35-205ENST00000563984 TSR1Q2NL82 804 aaKnown RBP10.73□□□□□ -0.69
VPS35-205ENST00000563984 FAM198AQ9UFP1 575 aa10.73□□□□□ -0.69
VPS35-205ENST00000563984 C3orf80F5H4A9 247 aa10.72□□□□□ -0.69
VPS35-205ENST00000563984 APLP1P51693 650 aa10.72□□□□□ -0.69
VPS35-205ENST00000563984 LCE2AQ5TA79 106 aaPredicted RBP10.72□□□□□ -0.69
VPS35-205ENST00000563984 SPDYE16A6NNV3 312 aaPredicted RBP10.7□□□□□ -0.7
VPS35-205ENST00000563984 EN1Q05925 392 aaPredicted RBP10.7□□□□□ -0.7
VPS35-205ENST00000563984 CDCA7LQ96GN5 454 aa10.69□□□□□ -0.7
VPS35-205ENST00000563984 GGCXP38435 758 aa10.68□□□□□ -0.7
VPS35-205ENST00000563984 PDIA6Q15084 440 aa10.68□□□□□ -0.7
VPS35-205ENST00000563984 TREML4Q6UXN2 200 aa10.68□□□□□ -0.7
VPS35-205ENST00000563984 P3H3Q8IVL6 736 aa10.68□□□□□ -0.7
VPS35-205ENST00000563984 VSIG10Q8N0Z9 540 aa10.68□□□□□ -0.7
VPS35-205ENST00000563984 TMUB1Q9BVT8 246 aa10.68□□□□□ -0.7
VPS35-205ENST00000563984 DGAT1O75907 488 aa10.67□□□□□ -0.7
VPS35-205ENST00000563984 PKDCCQ504Y2 493 aa10.67□□□□□ -0.7
VPS35-205ENST00000563984 ARHGEF1Q92888 912 aaKnown RBP10.67□□□□□ -0.7
VPS35-205ENST00000563984 EMID1Q96A84 441 aaPredicted RBP10.67□□□□□ -0.7
VPS35-205ENST00000563984 MAP3K7O43318 606 aa10.66□□□□□ -0.7
VPS35-205ENST00000563984 PRSS12P56730 875 aa10.66□□□□□ -0.7
VPS35-205ENST00000563984 TATDN2Q93075 761 aa10.66□□□□□ -0.7
VPS35-205ENST00000563984 NBR1Q14596 966 aa10.65□□□□□ -0.7
VPS35-205ENST00000563984 KCNV2Q8TDN2 545 aa10.65□□□□□ -0.7
VPS35-205ENST00000563984 SLC19A1P41440 591 aa10.63□□□□□ -0.71
VPS35-205ENST00000563984 COPS2P61201 443 aa10.63□□□□□ -0.71
VPS35-205ENST00000563984 PNMA3Q9UL41 463 aa10.63□□□□□ -0.71
VPS35-205ENST00000563984 KDM2AQ9Y2K7 1162 aa10.63□□□□□ -0.71
VPS35-205ENST00000563984 GRXCR2A6NFK2 248 aa10.62□□□□□ -0.71
VPS35-205ENST00000563984 RNF40O75150 1001 aa10.61□□□□□ -0.71
VPS35-205ENST00000563984 PRR20EP86478 221 aa10.61□□□□□ -0.71
VPS35-205ENST00000563984 PRR20CP86479 221 aa10.61□□□□□ -0.71
VPS35-205ENST00000563984 PRR20DP86480 221 aa10.61□□□□□ -0.71
VPS35-205ENST00000563984 PRR20BP86481 221 aa10.61□□□□□ -0.71
VPS35-205ENST00000563984 PRR20AP86496 221 aa10.61□□□□□ -0.71
Retrieved 100 of 20,778 RNA–protein pairs in 100.1 ms