RNA–Protein interactions for RNA: ENST00000563416.3

LINC00254-201, long intergenic non-protein coding RNA 254, humanhuman

TSL 3 BASIC

Gene LINC00254, Length 662 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00254-201ENST00000563416 RBM33Q96EV2 1170 aaKnown RBP11.69□□□□□ -0.54
LINC00254-201ENST00000563416 KCNK17Q96T54 332 aa11.66□□□□□ -0.54
LINC00254-201ENST00000563416 C6orf132Q5T0Z8 1188 aa11.65□□□□□ -0.54
LINC00254-201ENST00000563416 AXIN2Q9Y2T1 843 aa11.63□□□□□ -0.55
LINC00254-201ENST00000563416 PPP1R3GB7ZBB8 358 aa11.62□□□□□ -0.55
LINC00254-201ENST00000563416 PSEN2P49810 448 aa11.61□□□□□ -0.55
LINC00254-201ENST00000563416 TSR1Q2NL82 804 aaKnown RBP11.61□□□□□ -0.55
LINC00254-201ENST00000563416 POTEEQ6S8J3 1075 aa11.61□□□□□ -0.55
LINC00254-201ENST00000563416 CERKQ8TCT0 537 aa11.61□□□□□ -0.55
LINC00254-201ENST00000563416 PRIM1P49642 420 aaKnown RBP11.6□□□□□ -0.55
LINC00254-201ENST00000563416 LSM11P83369 360 aaKnown RBP eCLIP11.6□□□□□ -0.55
LINC00254-201ENST00000563416 NUTM2FA1L443 756 aa11.59□□□□□ -0.55
LINC00254-201ENST00000563416 KRTAP3-3Q9BYR6 98 aa11.59□□□□□ -0.55
LINC00254-201ENST00000563416 KRTAP3-2Q9BYR7 98 aa11.59□□□□□ -0.55
LINC00254-201ENST00000563416 RBM26Q5T8P6 1007 aaKnown RBP11.58□□□□□ -0.56
LINC00254-201ENST00000563416 DHX30Q7L2E3 1194 aaKnown RBP eCLIP11.56□□□□□ -0.56
LINC00254-201ENST00000563416 TK2O00142 265 aa11.55□□□□□ -0.56
LINC00254-201ENST00000563416 COL9A1P20849 921 aa11.55□□□□□ -0.56
LINC00254-201ENST00000563416 DMRTA1Q5VZB9 504 aa11.55□□□□□ -0.56
LINC00254-201ENST00000563416 ANKRD13DQ6ZTN6 518 aa11.55□□□□□ -0.56
LINC00254-201ENST00000563416 GPIHBP1Q8IV16 184 aa11.55□□□□□ -0.56
LINC00254-201ENST00000563416 SLC4A5Q9BY07 1137 aa11.55□□□□□ -0.56
LINC00254-201ENST00000563416 CDHR5Q9HBB8 845 aa11.55□□□□□ -0.56
LINC00254-201ENST00000563416 FCHSD2O94868 740 aa11.54□□□□□ -0.56
LINC00254-201ENST00000563416 LMOD2Q6P5Q4 547 aa11.54□□□□□ -0.56
LINC00254-201ENST00000563416 ZBED2Q9BTP6 218 aa11.54□□□□□ -0.56
LINC00254-201ENST00000563416 ONECUT3O60422 494 aaPredicted RBP11.51□□□□□ -0.57
LINC00254-201ENST00000563416 PTGDRQ13258 359 aa11.51□□□□□ -0.57
LINC00254-201ENST00000563416 ADGRD1Q6QNK2 874 aa11.51□□□□□ -0.57
LINC00254-201ENST00000563416 RBM27Q9P2N5 1060 aaKnown RBP11.51□□□□□ -0.57
LINC00254-201ENST00000563416 PRSS12P56730 875 aa11.5□□□□□ -0.57
LINC00254-201ENST00000563416 NPDC1Q9NQX5 325 aaPredicted RBP11.5□□□□□ -0.57
LINC00254-201ENST00000563416 VPS9D1Q9Y2B5 631 aa11.5□□□□□ -0.57
LINC00254-201ENST00000563416 TRIM6-TRIM34B2RNG4 842 aa11.49□□□□□ -0.57
LINC00254-201ENST00000563416 HIC1Q14526 733 aa11.49□□□□□ -0.57
LINC00254-201ENST00000563416 CDCA7LQ96GN5 454 aa11.49□□□□□ -0.57
LINC00254-201ENST00000563416 PROX2Q3B8N5 592 aa11.48□□□□□ -0.57
LINC00254-201ENST00000563416 STAC3Q96MF2 364 aa11.48□□□□□ -0.57
LINC00254-201ENST00000563416 PACS2Q86VP3 889 aa11.47□□□□□ -0.57
LINC00254-201ENST00000563416 RABGEF1Q9UJ41 708 aa11.47□□□□□ -0.57
LINC00254-201ENST00000563416 NBPF3Q9H094 633 aa11.46□□□□□ -0.57
LINC00254-201ENST00000563416 GNPATO15228 680 aa11.44□□□□□ -0.58
LINC00254-201ENST00000563416 PADI6Q6TGC4 694 aa11.44□□□□□ -0.58
LINC00254-201ENST00000563416 GPR37O15354 613 aa11.43□□□□□ -0.58
LINC00254-201ENST00000563416 KIAA1468Q9P260 1216 aa11.43□□□□□ -0.58
LINC00254-201ENST00000563416 TSKSQ9UJT2 592 aa11.43□□□□□ -0.58
LINC00254-201ENST00000563416 NBPF26B4DH59 902 aa11.42□□□□□ -0.58
LINC00254-201ENST00000563416 HRO43593 1189 aa11.42□□□□□ -0.58
LINC00254-201ENST00000563416 MRPL50Q8N5N7 158 aaKnown RBP11.41□□□□□ -0.58
LINC00254-201ENST00000563416 BHMG1C9JSJ3 638 aaPredicted RBP11.4□□□□□ -0.58
LINC00254-201ENST00000563416 TTC13Q8NBP0 860 aa11.4□□□□□ -0.58
LINC00254-201ENST00000563416 LAPTM4BQ86VI4 370 aa11.38□□□□□ -0.59
LINC00254-201ENST00000563416 SPNS2Q8IVW8 549 aa11.38□□□□□ -0.59
LINC00254-201ENST00000563416 ZC3H15Q8WU90 426 aaKnown RBP11.38□□□□□ -0.59
LINC00254-201ENST00000563416 PNMA3Q9UL41 463 aa11.38□□□□□ -0.59
LINC00254-201ENST00000563416 GOLGA8CPA6NN73 597 aa11.37□□□□□ -0.59
LINC00254-201ENST00000563416 TATDN2Q93075 761 aa11.37□□□□□ -0.59
LINC00254-201ENST00000563416 FAM198AQ9UFP1 575 aa11.37□□□□□ -0.59
LINC00254-201ENST00000563416 NUDT18Q6ZVK8 323 aa11.35□□□□□ -0.59
LINC00254-201ENST00000563416 MYT1LQ9UL68 1186 aa11.35□□□□□ -0.59
LINC00254-201ENST00000563416 OATP04181 439 aa11.34□□□□□ -0.59
LINC00254-201ENST00000563416 MAP2K5Q13163 448 aa11.34□□□□□ -0.59
LINC00254-201ENST00000563416 FAM98CQ17RN3 349 aaKnown RBP11.34□□□□□ -0.59
LINC00254-201ENST00000563416 RBM46Q8TBY0 533 aaKnown RBP11.34□□□□□ -0.59
LINC00254-201ENST00000563416 SEPT9Q9UHD8 586 aaPredicted RBP11.34□□□□□ -0.59
LINC00254-201ENST00000563416 ZMYND10O75800 440 aa11.33□□□□□ -0.6
LINC00254-201ENST00000563416 FECHP22830 423 aa11.33□□□□□ -0.6
LINC00254-201ENST00000563416 ADGRG1Q9Y653 693 aa11.33□□□□□ -0.6
LINC00254-201ENST00000563416 KRI1Q8N9T8 703 aaKnown RBP11.32□□□□□ -0.6
LINC00254-201ENST00000563416 MINK1Q8N4C8 1332 aaPredicted RBP11.32□□□□□ -0.6
LINC00254-201ENST00000563416 SMAPO00193 183 aa11.31□□□□□ -0.6
LINC00254-201ENST00000563416 BARGINQ6ZT62 677 aa11.31□□□□□ -0.6
LINC00254-201ENST00000563416 HDGFP51858 240 aaKnown RBP11.3□□□□□ -0.6
LINC00254-201ENST00000563416 ZFRQ96KR1 1074 aaKnown RBP11.29□□□□□ -0.6
LINC00254-201ENST00000563416 IRF6O14896 467 aa11.28□□□□□ -0.6
LINC00254-201ENST00000563416 ANKK1Q8NFD2 765 aa11.28□□□□□ -0.6
LINC00254-201ENST00000563416 RNF166Q96A37 237 aaPredicted RBP11.28□□□□□ -0.6
LINC00254-201ENST00000563416 EYA1Q99502 592 aa11.28□□□□□ -0.6
LINC00254-201ENST00000563416 C3orf80F5H4A9 247 aa11.27□□□□□ -0.61
LINC00254-201ENST00000563416 MMRN1Q13201 1228 aa11.27□□□□□ -0.61
LINC00254-201ENST00000563416 FAM161AQ3B820 660 aa11.27□□□□□ -0.61
LINC00254-201ENST00000563416 WNT2BQ93097 391 aa11.27□□□□□ -0.61
LINC00254-201ENST00000563416 DNAJB2P25686 324 aa11.26□□□□□ -0.61
LINC00254-201ENST00000563416 METTL3Q86U44 580 aaKnown RBP11.26□□□□□ -0.61
LINC00254-201ENST00000563416 PXYLP1Q8TE99 480 aa11.26□□□□□ -0.61
LINC00254-201ENST00000563416 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP11.25□□□□□ -0.61
LINC00254-201ENST00000563416 SLC4A3P48751 1232 aa11.25□□□□□ -0.61
LINC00254-201ENST00000563416 KCTD12Q96CX2 325 aaKnown RBP11.25□□□□□ -0.61
LINC00254-201ENST00000563416 CCDC102AQ96A19 550 aa11.24□□□□□ -0.61
LINC00254-201ENST00000563416 RCCD1A6NED2 376 aa11.23□□□□□ -0.61
LINC00254-201ENST00000563416 LRCH3Q96II8 777 aa11.23□□□□□ -0.61
LINC00254-201ENST00000563416 CDKN2AIPQ9NXV6 580 aaPredicted RBP11.23□□□□□ -0.61
LINC00254-201ENST00000563416 SAMD7Q7Z3H4 446 aa11.21□□□□□ -0.61
LINC00254-201ENST00000563416 SOWAHBA6NEL2 793 aa11.2□□□□□ -0.62
LINC00254-201ENST00000563416 THSD4Q6ZMP0 1018 aa11.2□□□□□ -0.62
LINC00254-201ENST00000563416 TMEM134Q9H6X4 195 aa11.2□□□□□ -0.62
LINC00254-201ENST00000563416 SWT1Q5T5J6 900 aaKnown RBP11.19□□□□□ -0.62
LINC00254-201ENST00000563416 SLF2Q8IX21 1173 aa11.19□□□□□ -0.62
LINC00254-201ENST00000563416 NECTIN2Q92692 538 aa11.19□□□□□ -0.62
LINC00254-201ENST00000563416 AK7Q96M32 723 aa11.19□□□□□ -0.62
Retrieved 100 of 20,778 RNA–protein pairs in 12.4 ms