RNA–Protein interactions for RNA: ENST00000561731.1

PTPN9-202, Transcript of protein tyrosine phosphatase, non-receptor type 9, humanhuman

TSL 3

Gene PTPN9, Length 545 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN9-202ENST00000561731 MRPL50Q8N5N7 158 aaKnown RBP11.74□□□□□ -0.53
PTPN9-202ENST00000561731 CFAP44Q96MT7 982 aa11.74□□□□□ -0.53
PTPN9-202ENST00000561731 EPAS1Q99814 870 aa11.74□□□□□ -0.53
PTPN9-202ENST00000561731 COL9A1P20849 921 aa11.69□□□□□ -0.54
PTPN9-202ENST00000561731 PTPN5P54829 565 aa11.69□□□□□ -0.54
PTPN9-202ENST00000561731 THSD4Q6ZMP0 1018 aa11.68□□□□□ -0.54
PTPN9-202ENST00000561731 WNT2BQ93097 391 aa11.68□□□□□ -0.54
PTPN9-202ENST00000561731 RABGEF1Q9UJ41 708 aa11.68□□□□□ -0.54
PTPN9-202ENST00000561731 PROX2Q3B8N5 592 aa11.67□□□□□ -0.54
PTPN9-202ENST00000561731 DDX12PQ92771 950 aa11.67□□□□□ -0.54
PTPN9-202ENST00000561731 WDR70Q9NW82 654 aa11.67□□□□□ -0.54
PTPN9-202ENST00000561731 PDIA6Q15084 440 aa11.66□□□□□ -0.54
PTPN9-202ENST00000561731 C6orf132Q5T0Z8 1188 aa11.66□□□□□ -0.54
PTPN9-202ENST00000561731 E2F4Q16254 413 aa11.65□□□□□ -0.54
PTPN9-202ENST00000561731 SPDYE16A6NNV3 312 aaPredicted RBP11.64□□□□□ -0.55
PTPN9-202ENST00000561731 RBM33Q96EV2 1170 aaKnown RBP11.64□□□□□ -0.55
PTPN9-202ENST00000561731 NBR1Q14596 966 aa11.62□□□□□ -0.55
PTPN9-202ENST00000561731 ONECUT3O60422 494 aaPredicted RBP11.61□□□□□ -0.55
PTPN9-202ENST00000561731 ANKK1Q8NFD2 765 aa11.61□□□□□ -0.55
PTPN9-202ENST00000561731 LAPTM4BQ86VI4 370 aa11.6□□□□□ -0.55
PTPN9-202ENST00000561731 KIAA1468Q9P260 1216 aa11.6□□□□□ -0.55
PTPN9-202ENST00000561731 MAP3K7O43318 606 aa11.59□□□□□ -0.55
PTPN9-202ENST00000561731 EN1Q05925 392 aaPredicted RBP11.59□□□□□ -0.55
PTPN9-202ENST00000561731 ARIH1Q9Y4X5 557 aaPredicted RBP11.59□□□□□ -0.55
PTPN9-202ENST00000561731 TRIM6-TRIM34B2RNG4 842 aa11.58□□□□□ -0.56
PTPN9-202ENST00000561731 TSR1Q2NL82 804 aaKnown RBP11.54□□□□□ -0.56
PTPN9-202ENST00000561731 ZFRQ96KR1 1074 aaKnown RBP11.54□□□□□ -0.56
PTPN9-202ENST00000561731 SEPT9Q9UHD8 586 aaPredicted RBP11.53□□□□□ -0.56
PTPN9-202ENST00000561731 GRXCR2A6NFK2 248 aa11.52□□□□□ -0.57
PTPN9-202ENST00000561731 SOWAHBA6NEL2 793 aa11.51□□□□□ -0.57
PTPN9-202ENST00000561731 BCAMP50895 628 aa11.51□□□□□ -0.57
PTPN9-202ENST00000561731 FAM98CQ17RN3 349 aaKnown RBP11.51□□□□□ -0.57
PTPN9-202ENST00000561731 IFFO2Q5TF58 517 aa11.51□□□□□ -0.57
PTPN9-202ENST00000561731 PACS2Q86VP3 889 aa11.5□□□□□ -0.57
PTPN9-202ENST00000561731 CERKQ8TCT0 537 aa11.49□□□□□ -0.57
PTPN9-202ENST00000561731 NYAP1Q6ZVC0 841 aa11.47□□□□□ -0.57
PTPN9-202ENST00000561731 TSKSQ9UJT2 592 aa11.47□□□□□ -0.57
PTPN9-202ENST00000561731 PRIM1P49642 420 aaKnown RBP11.45□□□□□ -0.58
PTPN9-202ENST00000561731 PRSS12P56730 875 aa11.45□□□□□ -0.58
PTPN9-202ENST00000561731 CDCA7LQ96GN5 454 aa11.45□□□□□ -0.58
PTPN9-202ENST00000561731 LRCH3Q96II8 777 aa11.45□□□□□ -0.58
PTPN9-202ENST00000561731 CDKN2AIPQ9NXV6 580 aaPredicted RBP11.45□□□□□ -0.58
PTPN9-202ENST00000561731 OSBPP22059 807 aa11.43□□□□□ -0.58
PTPN9-202ENST00000561731 TSHZ2Q9NRE2 1034 aa11.43□□□□□ -0.58
PTPN9-202ENST00000561731 WBP1LQ9NX94 342 aa11.43□□□□□ -0.58
PTPN9-202ENST00000561731 A0A0G2JS52 829 aa11.42□□□□□ -0.58
PTPN9-202ENST00000561731 ITGBL1O95965 494 aaPredicted RBP11.41□□□□□ -0.58
PTPN9-202ENST00000561731 TSR3Q9UJK0 312 aaKnown RBP11.41□□□□□ -0.58
PTPN9-202ENST00000561731 HPS5Q9UPZ3 1129 aa11.41□□□□□ -0.58
PTPN9-202ENST00000561731 NBPF26B4DH59 902 aa11.4□□□□□ -0.58
PTPN9-202ENST00000561731 CDHR5Q9HBB8 845 aa11.4□□□□□ -0.58
PTPN9-202ENST00000561731 RGS20O76081 388 aa11.39□□□□□ -0.59
PTPN9-202ENST00000561731 ARHGEF1Q92888 912 aaKnown RBP11.38□□□□□ -0.59
PTPN9-202ENST00000561731 RBM27Q9P2N5 1060 aaKnown RBP11.38□□□□□ -0.59
PTPN9-202ENST00000561731 FAM198AQ9UFP1 575 aa11.38□□□□□ -0.59
PTPN9-202ENST00000561731 SMAPO00193 183 aa11.37□□□□□ -0.59
PTPN9-202ENST00000561731 TATDN2Q93075 761 aa11.37□□□□□ -0.59
PTPN9-202ENST00000561731 PNMA3Q9UL41 463 aa11.37□□□□□ -0.59
PTPN9-202ENST00000561731 KCNV2Q8TDN2 545 aa11.35□□□□□ -0.59
PTPN9-202ENST00000561731 PPP4CP60510 307 aa11.34□□□□□ -0.59
PTPN9-202ENST00000561731 SAMD7Q7Z3H4 446 aa11.34□□□□□ -0.59
PTPN9-202ENST00000561731 KCNC4Q03721 635 aa11.33□□□□□ -0.6
PTPN9-202ENST00000561731 C3orf80F5H4A9 247 aa11.32□□□□□ -0.6
PTPN9-202ENST00000561731 NUDT18Q6ZVK8 323 aa11.32□□□□□ -0.6
PTPN9-202ENST00000561731 HDGFP51858 240 aaKnown RBP11.3□□□□□ -0.6
PTPN9-202ENST00000561731 PADI6Q6TGC4 694 aa11.3□□□□□ -0.6
PTPN9-202ENST00000561731 NPDC1Q9NQX5 325 aaPredicted RBP11.3□□□□□ -0.6
PTPN9-202ENST00000561731 MLLT3P42568 568 aaPredicted RBP11.29□□□□□ -0.6
PTPN9-202ENST00000561731 P3H3Q8IVL6 736 aa11.29□□□□□ -0.6
PTPN9-202ENST00000561731 TTC13Q8NBP0 860 aa11.29□□□□□ -0.6
PTPN9-202ENST00000561731 RNF40O75150 1001 aa11.26□□□□□ -0.61
PTPN9-202ENST00000561731 NECTIN2Q92692 538 aa11.24□□□□□ -0.61
PTPN9-202ENST00000561731 IRX2Q9BZI1 471 aaPredicted RBP11.23□□□□□ -0.61
PTPN9-202ENST00000561731 SLC4A3P48751 1232 aa11.2□□□□□ -0.62
PTPN9-202ENST00000561731 TJAP1Q5JTD0 557 aa11.2□□□□□ -0.62
PTPN9-202ENST00000561731 SWT1Q5T5J6 900 aaKnown RBP11.2□□□□□ -0.62
PTPN9-202ENST00000561731 SLF2Q8IX21 1173 aa11.2□□□□□ -0.62
PTPN9-202ENST00000561731 PTGDRQ13258 359 aa11.19□□□□□ -0.62
PTPN9-202ENST00000561731 MTRQ99707 1265 aa11.19□□□□□ -0.62
PTPN9-202ENST00000561731 IL21Q9HBE4 155 aa11.19□□□□□ -0.62
PTPN9-202ENST00000561731 PLCB2Q00722 1185 aa11.18□□□□□ -0.62
PTPN9-202ENST00000561731 EYA1Q99502 592 aa11.18□□□□□ -0.62
PTPN9-202ENST00000561731 NUTM2FA1L443 756 aa11.17□□□□□ -0.62
PTPN9-202ENST00000561731 APLP1P51693 650 aa11.16□□□□□ -0.62
PTPN9-202ENST00000561731 SEMA3EO15041 775 aa11.14□□□□□ -0.63
PTPN9-202ENST00000561731 RBM46Q8TBY0 533 aaKnown RBP11.14□□□□□ -0.63
PTPN9-202ENST00000561731 DNAJB2P25686 324 aa11.13□□□□□ -0.63
PTPN9-202ENST00000561731 FCHSD2O94868 740 aa11.12□□□□□ -0.63
PTPN9-202ENST00000561731 PRR14Q9BWN1 585 aa11.11□□□□□ -0.63
PTPN9-202ENST00000561731 ADGRG1Q9Y653 693 aa11.11□□□□□ -0.63
PTPN9-202ENST00000561731 ZNF516Q92618 1163 aa11.1□□□□□ -0.63
PTPN9-202ENST00000561731 COPS2P61201 443 aa11.08□□□□□ -0.64
PTPN9-202ENST00000561731 TMEM134Q9H6X4 195 aa11.08□□□□□ -0.64
PTPN9-202ENST00000561731 SMYD5Q6GMV2 418 aa11.07□□□□□ -0.64
PTPN9-202ENST00000561731 PPP1R18Q6NYC8 613 aa11.07□□□□□ -0.64
PTPN9-202ENST00000561731 TESPA1A2RU30 521 aaPredicted RBP11.05□□□□□ -0.64
PTPN9-202ENST00000561731 RCCD1A6NED2 376 aa11.05□□□□□ -0.64
PTPN9-202ENST00000561731 FAM161AQ3B820 660 aa11.05□□□□□ -0.64
PTPN9-202ENST00000561731 PCDHB3Q9Y5E6 796 aa11.05□□□□□ -0.64
PTPN9-202ENST00000561731 EIF4ENIF1Q9NRA8 985 aaKnown RBP11.04□□□□□ -0.64
Retrieved 100 of 20,778 RNA–protein pairs in 31.7 ms