RNA–Protein interactions for RNA: ENST00000560634.1

CSPG4P11-201, Transcript of chondroitin sulfate proteoglycan 4 pseudogene 11, humanhuman

BASIC

Gene CSPG4P11, Length 4,910 nt, Biotype unprocessed pseudogene.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSPG4P11-201ENST00000560634 ERCC6Q03468 1493 aa16.36■□□□□ 0.21
CSPG4P11-201ENST00000560634 SOGA1O94964 1423 aa16.36■□□□□ 0.21
CSPG4P11-201ENST00000560634 RSPH4AQ5TD94 716 aa16.35■□□□□ 0.21
CSPG4P11-201ENST00000560634 NCBP3Q53F19 620 aaKnown RBP16.35■□□□□ 0.21
CSPG4P11-201ENST00000560634 L3MBTL2Q969R5 705 aa16.35■□□□□ 0.21
CSPG4P11-201ENST00000560634 ZNF330Q9Y3S2 320 aaPredicted RBP16.35■□□□□ 0.21
CSPG4P11-201ENST00000560634 CEP89Q96ST8 783 aa16.34■□□□□ 0.21
CSPG4P11-201ENST00000560634 HSP90AA2PQ14568 343 aaPredicted RBP16.34■□□□□ 0.21
CSPG4P11-201ENST00000560634 FAM161AQ3B820 660 aa16.34■□□□□ 0.21
CSPG4P11-201ENST00000560634 SLC4A10Q6U841 1118 aa16.34■□□□□ 0.21
CSPG4P11-201ENST00000560634 CHMP3Q9Y3E7 222 aa16.34■□□□□ 0.21
CSPG4P11-201ENST00000560634 DDX49Q9Y6V7 483 aaKnown RBP16.32■□□□□ 0.2
CSPG4P11-201ENST00000560634 KIF15Q9NS87 1388 aa16.32■□□□□ 0.2
CSPG4P11-201ENST00000560634 ZBTB4Q9P1Z0 1013 aaPredicted RBP16.31■□□□□ 0.2
CSPG4P11-201ENST00000560634 MYBBP1AQ9BQG0 1328 aaKnown RBP16.3■□□□□ 0.2
CSPG4P11-201ENST00000560634 PDE4AP27815 886 aa16.3■□□□□ 0.2
CSPG4P11-201ENST00000560634 CGNL1Q0VF96 1302 aa16.3■□□□□ 0.2
CSPG4P11-201ENST00000560634 TSR1Q2NL82 804 aaKnown RBP16.3■□□□□ 0.2
CSPG4P11-201ENST00000560634 GOLGA6L19H0YKK7 550 aa16.3■□□□□ 0.2
CSPG4P11-201ENST00000560634 FOXD4L1Q9NU39 408 aa16.3■□□□□ 0.2
CSPG4P11-201ENST00000560634 GSE1Q14687 1217 aa16.29■□□□□ 0.2
CSPG4P11-201ENST00000560634 NOL8Q76FK4 1167 aaKnown RBP16.29■□□□□ 0.2
CSPG4P11-201ENST00000560634 CCDC146Q8IYE0 955 aa16.28■□□□□ 0.2
CSPG4P11-201ENST00000560634 BECN2A8MW95 431 aa16.28■□□□□ 0.2
CSPG4P11-201ENST00000560634 NGEFQ8N5V2 710 aa16.28■□□□□ 0.2
CSPG4P11-201ENST00000560634 GPS2Q13227 327 aa16.28■□□□□ 0.2
CSPG4P11-201ENST00000560634 E9PSI1 815 aa16.27■□□□□ 0.2
CSPG4P11-201ENST00000560634 H3BQV1 296 aa16.27■□□□□ 0.2
CSPG4P11-201ENST00000560634 IFFO2Q5TF58 517 aa16.27■□□□□ 0.2
CSPG4P11-201ENST00000560634 TPM1P09493 284 aa16.27■□□□□ 0.19
CSPG4P11-201ENST00000560634 ZKSCAN2Q63HK3 967 aa16.27■□□□□ 0.19
CSPG4P11-201ENST00000560634 AMPHP49418 695 aa16.26■□□□□ 0.19
CSPG4P11-201ENST00000560634 FAM184AQ8NB25 1140 aa16.26■□□□□ 0.19
CSPG4P11-201ENST00000560634 CREBRFQ8IUR6 639 aa16.26■□□□□ 0.19
CSPG4P11-201ENST00000560634 TOMM22Q9NS69 142 aa16.26■□□□□ 0.19
CSPG4P11-201ENST00000560634 MROH2BQ7Z745 1585 aa16.26■□□□□ 0.19
CSPG4P11-201ENST00000560634 KIF3BO15066 747 aa16.25■□□□□ 0.19
CSPG4P11-201ENST00000560634 CPLX2Q6PUV4 134 aaKnown RBP16.25■□□□□ 0.19
CSPG4P11-201ENST00000560634 MARCH6O60337 910 aa16.25■□□□□ 0.19
CSPG4P11-201ENST00000560634 LRRFIP1Q32MZ4 808 aaKnown RBP16.25■□□□□ 0.19
CSPG4P11-201ENST00000560634 NGDNQ8NEJ9 315 aaKnown RBP16.25■□□□□ 0.19
CSPG4P11-201ENST00000560634 SETQ01105 290 aaPredicted RBP16.24■□□□□ 0.19
CSPG4P11-201ENST00000560634 TPD52L1Q16890 204 aaPredicted RBP16.24■□□□□ 0.19
CSPG4P11-201ENST00000560634 CCDC70Q6NSX1 233 aa16.24■□□□□ 0.19
CSPG4P11-201ENST00000560634 REC8O95072 547 aa16.23■□□□□ 0.19
CSPG4P11-201ENST00000560634 ANKRD45Q5TZF3 282 aa16.23■□□□□ 0.19
CSPG4P11-201ENST00000560634 RUFY2Q8WXA3 655 aa16.23■□□□□ 0.19
CSPG4P11-201ENST00000560634 ZBED9Q6R2W3 1325 aa16.22■□□□□ 0.19
CSPG4P11-201ENST00000560634 EID1Q9Y6B2 187 aa16.22■□□□□ 0.19
CSPG4P11-201ENST00000560634 SMARCA2P51531 1590 aa16.22■□□□□ 0.19
CSPG4P11-201ENST00000560634 TPM2P07951 284 aa16.22■□□□□ 0.19
CSPG4P11-201ENST00000560634 RRP1P56182 461 aaKnown RBP16.22■□□□□ 0.19
CSPG4P11-201ENST00000560634 AKAP17AQ02040 695 aaKnown RBP16.21■□□□□ 0.19
CSPG4P11-201ENST00000560634 FRAT2O75474 233 aaPredicted RBP16.21■□□□□ 0.19
CSPG4P11-201ENST00000560634 RILPL2Q969X0 211 aa16.21■□□□□ 0.19
CSPG4P11-201ENST00000560634 FANCIQ9NVI1 1328 aa16.2■□□□□ 0.18
CSPG4P11-201ENST00000560634 FOXD4L5Q5VV16 416 aaPredicted RBP16.2■□□□□ 0.18
CSPG4P11-201ENST00000560634 FOXD4L4Q8WXT5 416 aaPredicted RBP16.2■□□□□ 0.18
CSPG4P11-201ENST00000560634 PES1O00541 588 aaKnown RBP16.2■□□□□ 0.18
CSPG4P11-201ENST00000560634 PRKRIP1Q9H875 184 aaPredicted RBP16.2■□□□□ 0.18
CSPG4P11-201ENST00000560634 ZKSCAN1P17029 563 aaPredicted RBP16.2■□□□□ 0.18
CSPG4P11-201ENST00000560634 SYNE3Q6ZMZ3 975 aa16.2■□□□□ 0.18
CSPG4P11-201ENST00000560634 IPO7O95373 1038 aaKnown RBP16.19■□□□□ 0.18
CSPG4P11-201ENST00000560634 TRHP20396 242 aaPredicted RBP16.19■□□□□ 0.18
CSPG4P11-201ENST00000560634 G3V3G9 751 aa16.19■□□□□ 0.18
CSPG4P11-201ENST00000560634 DCAF8Q5TAQ9 597 aa16.19■□□□□ 0.18
CSPG4P11-201ENST00000560634 DIAPH3Q9NSV4 1193 aa16.19■□□□□ 0.18
CSPG4P11-201ENST00000560634 CHMP5Q9NZZ3 219 aa16.19■□□□□ 0.18
CSPG4P11-201ENST00000560634 GTF2E1P29083 439 aaPredicted RBP16.19■□□□□ 0.18
CSPG4P11-201ENST00000560634 PANK3Q9H999 370 aa16.19■□□□□ 0.18
CSPG4P11-201ENST00000560634 ST20-MTHFSA0A0A6YYL1 179 aa16.18■□□□□ 0.18
CSPG4P11-201ENST00000560634 DDX19BQ9UMR2 479 aa16.18■□□□□ 0.18
CSPG4P11-201ENST00000560634 CCDC88BA6NC98 1476 aa16.17■□□□□ 0.18
CSPG4P11-201ENST00000560634 CCAR2Q8N163 923 aaKnown RBP16.17■□□□□ 0.18
CSPG4P11-201ENST00000560634 EXOC6Q8TAG9 804 aa16.17■□□□□ 0.18
CSPG4P11-201ENST00000560634 PRM3Q9NNZ6 103 aa16.17■□□□□ 0.18
CSPG4P11-201ENST00000560634 WASHC2CQ9Y4E1 1318 aa16.17■□□□□ 0.18
CSPG4P11-201ENST00000560634 ANKRD20A12PQ8NF67 263 aa16.16■□□□□ 0.18
CSPG4P11-201ENST00000560634 API5Q9BZZ5 524 aaKnown RBP16.16■□□□□ 0.18
CSPG4P11-201ENST00000560634 RRP7AQ9Y3A4 280 aaKnown RBP16.16■□□□□ 0.18
CSPG4P11-201ENST00000560634 PDE4CQ08493 712 aa16.15■□□□□ 0.18
CSPG4P11-201ENST00000560634 CCDC47Q96A33 483 aaKnown RBP16.15■□□□□ 0.18
CSPG4P11-201ENST00000560634 UACAQ9BZF9 1416 aa16.15■□□□□ 0.18
CSPG4P11-201ENST00000560634 SUGP2Q8IX01 1082 aaKnown RBP eCLIP16.15■□□□□ 0.18
CSPG4P11-201ENST00000560634 CRBNQ96SW2 442 aa16.15■□□□□ 0.18
CSPG4P11-201ENST00000560634 CCDC18Q5T9S5 1454 aa16.15■□□□□ 0.18
CSPG4P11-201ENST00000560634 NEXNQ0ZGT2 675 aa16.14■□□□□ 0.17
CSPG4P11-201ENST00000560634 TRAK1Q9UPV9 953 aa16.14■□□□□ 0.17
CSPG4P11-201ENST00000560634 COG6Q9Y2V7 657 aa16.14■□□□□ 0.17
CSPG4P11-201ENST00000560634 AAMPQ13685 434 aa16.14■□□□□ 0.17
CSPG4P11-201ENST00000560634 VSIG10Q8N0Z9 540 aa16.14■□□□□ 0.17
CSPG4P11-201ENST00000560634 PDS5BQ9NTI5 1447 aa16.14■□□□□ 0.17
CSPG4P11-201ENST00000560634 HNRNPMP52272 730 aaKnown RBP eCLIP16.14■□□□□ 0.17
CSPG4P11-201ENST00000560634 NUCB2P80303 420 aa16.14■□□□□ 0.17
CSPG4P11-201ENST00000560634 TRIM29Q14134 588 aa16.14■□□□□ 0.17
CSPG4P11-201ENST00000560634 HOOK1Q9UJC3 728 aaKnown RBP16.13■□□□□ 0.17
CSPG4P11-201ENST00000560634 CCDC144AA2RUR9 1427 aa16.13■□□□□ 0.17
CSPG4P11-201ENST00000560634 SLC4A3P48751 1232 aa16.13■□□□□ 0.17
CSPG4P11-201ENST00000560634 TEX35Q5T0J7 233 aa16.13■□□□□ 0.17
CSPG4P11-201ENST00000560634 COG3Q96JB2 828 aa16.13■□□□□ 0.17
Retrieved 100 of 20,778 RNA–protein pairs in 314.2 ms