RNA–Protein interactions for RNA: ENST00000560541.5

CUX1-218, Transcript of cut like homeobox 1, humanhuman

TSL 5

Gene CUX1, Length 3,176 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-218ENST00000560541 CARMIL2Q6F5E8 1435 aa15.17■□□□□ 0.02
CUX1-218ENST00000560541 RGL3Q3MIN7 710 aa15.17■□□□□ 0.02
CUX1-218ENST00000560541 ARID4BQ4LE39 1312 aaPredicted RBP15.16■□□□□ 0.02
CUX1-218ENST00000560541 KIF15Q9NS87 1388 aa15.16■□□□□ 0.02
CUX1-218ENST00000560541 ROCK2O75116 1388 aaKnown RBP15.16■□□□□ 0.02
CUX1-218ENST00000560541 RNF123Q5XPI4 1314 aa15.16■□□□□ 0.02
CUX1-218ENST00000560541 UHRF1BP1Q6BDS2 1440 aa15.15■□□□□ 0.02
CUX1-218ENST00000560541 ERCC6Q03468 1493 aa15.15■□□□□ 0.02
CUX1-218ENST00000560541 SYNJ2O15056 1496 aa15.15■□□□□ 0.02
CUX1-218ENST00000560541 NOP58Q9Y2X3 529 aaKnown RBP15.14■□□□□ 0.01
CUX1-218ENST00000560541 ADCY10Q96PN6 1610 aa15.14■□□□□ 0.01
CUX1-218ENST00000560541 MYBBP1AQ9BQG0 1328 aaKnown RBP15.14■□□□□ 0.01
CUX1-218ENST00000560541 CDC42BPAQ5VT25 1732 aa15.13■□□□□ 0.01
CUX1-218ENST00000560541 MAGI1Q96QZ7 1491 aaPredicted RBP15.13■□□□□ 0.01
CUX1-218ENST00000560541 ATP10BO94823 1461 aa15.13■□□□□ 0.01
CUX1-218ENST00000560541 GRWD1Q9BQ67 446 aaKnown RBP eCLIP15.13■□□□□ 0.011e-6■■□□□ 14.2
CUX1-218ENST00000560541 NBPF1Q3BBV0 1214 aa15.12■□□□□ 0.01
CUX1-218ENST00000560541 VSIG10Q8N0Z9 540 aa15.12■□□□□ 0.01
CUX1-218ENST00000560541 ABCC10Q5T3U5 1492 aa15.11■□□□□ 0.01
CUX1-218ENST00000560541 ZMYND15Q9H091 742 aa15.1■□□□□ 0.01
CUX1-218ENST00000560541 BRD4O60885 1362 aaPredicted RBP15.1■□□□□ 0.01
CUX1-218ENST00000560541 LRPPRCP42704 1394 aaKnown RBP15.1■□□□□ 0.01
CUX1-218ENST00000560541 RALBP1Q15311 655 aa15.1■□□□□ 0.01
CUX1-218ENST00000560541 EXOC6Q8TAG9 804 aa15.1■□□□□ 0.01
CUX1-218ENST00000560541 ARHGEF12Q9NZN5 1544 aa15.09■□□□□ 0.01
CUX1-218ENST00000560541 A0A0U1RQG5 324 aaPredicted RBP15.09■□□□□ 0.01
CUX1-218ENST00000560541 CC2D1BQ5T0F9 858 aaKnown RBP15.09■□□□□ 0.01
CUX1-218ENST00000560541 SHANK2Q9UPX8 1470 aa15.08■□□□□ 0.01
CUX1-218ENST00000560541 ANP32AP39687 249 aaKnown RBP15.08■□□□□ 0
CUX1-218ENST00000560541 RRP1P56182 461 aaKnown RBP15.08■□□□□ 0
CUX1-218ENST00000560541 NUP160Q12769 1436 aa15.07■□□□□ 0
CUX1-218ENST00000560541 CDCA7LQ96GN5 454 aa15.07■□□□□ 0
CUX1-218ENST00000560541 RCAN3Q9UKA8 241 aa15.07■□□□□ 0
CUX1-218ENST00000560541 NPM2Q86SE8 214 aaKnown RBP15.06■□□□□ 0
CUX1-218ENST00000560541 ABCA8O94911 1581 aa15.06■□□□□ 0
CUX1-218ENST00000560541 NLRP13Q86W25 1043 aa15.06■□□□□ 0
CUX1-218ENST00000560541 KTN1Q86UP2 1357 aaKnown RBP15.05■□□□□ 0
CUX1-218ENST00000560541 CCDC144AA2RUR9 1427 aa15.05■□□□□ 0
CUX1-218ENST00000560541 FAM135AQ9P2D6 1515 aa15.04■□□□□ -0
CUX1-218ENST00000560541 PTPRGP23470 1445 aa15.04■□□□□ -0
CUX1-218ENST00000560541 KDM5DQ9BY66 1539 aa15.04■□□□□ -0
CUX1-218ENST00000560541 IPO9Q96P70 1041 aaKnown RBP15.04■□□□□ -0
CUX1-218ENST00000560541 BRPF3Q9ULD4 1205 aa15.03■□□□□ -0
CUX1-218ENST00000560541 PRAG1Q86YV5 1406 aa15.03■□□□□ -0
CUX1-218ENST00000560541 PLIN1O60240 522 aa15.03■□□□□ -0
CUX1-218ENST00000560541 PER1O15534 1290 aaPredicted RBP15.01□□□□□ -0.01
CUX1-218ENST00000560541 CCDC141Q6ZP82 1450 aa15.01□□□□□ -0.01
CUX1-218ENST00000560541 ZBTB47Q9UFB7 747 aaPredicted RBP15.01□□□□□ -0.01
CUX1-218ENST00000560541 PARD3Q8TEW0 1356 aa15.01□□□□□ -0.01
CUX1-218ENST00000560541 DISP3Q9P2K9 1392 aa15.01□□□□□ -0.01
CUX1-218ENST00000560541 PANK3Q9H999 370 aa15□□□□□ -0.01
CUX1-218ENST00000560541 E9PCH4 1651 aa15□□□□□ -0.01
CUX1-218ENST00000560541 SAMD9LQ8IVG5 1584 aa15□□□□□ -0.01
CUX1-218ENST00000560541 SKAP1Q86WV1 359 aa15□□□□□ -0.01
CUX1-218ENST00000560541 PLA2R1Q13018 1463 aa14.98□□□□□ -0.01
CUX1-218ENST00000560541 ARHGEF5Q12774 1597 aa14.98□□□□□ -0.01
CUX1-218ENST00000560541 A2MP01023 1474 aa14.97□□□□□ -0.01
CUX1-218ENST00000560541 TESK2Q96S53 571 aa14.97□□□□□ -0.01
CUX1-218ENST00000560541 SYCP2Q9BX26 1530 aa14.97□□□□□ -0.01
CUX1-218ENST00000560541 TRPM1Q7Z4N2 1603 aa14.97□□□□□ -0.01
CUX1-218ENST00000560541 CDC42BPBQ9Y5S2 1711 aa14.96□□□□□ -0.01
CUX1-218ENST00000560541 GLIPR1L2Q4G1C9 344 aa14.95□□□□□ -0.02
CUX1-218ENST00000560541 ARHGAP5Q13017 1502 aa14.95□□□□□ -0.02
CUX1-218ENST00000560541 PLEKHH2Q8IVE3 1493 aa14.95□□□□□ -0.02
CUX1-218ENST00000560541 PDE3BQ13370 1112 aa14.94□□□□□ -0.02
CUX1-218ENST00000560541 PDE4AP27815 886 aa14.94□□□□□ -0.02
CUX1-218ENST00000560541 COL17A1Q9UMD9 1497 aaPredicted RBP14.94□□□□□ -0.02
CUX1-218ENST00000560541 CRBNQ96SW2 442 aa14.93□□□□□ -0.02
CUX1-218ENST00000560541 ERBINQ96RT1 1412 aa14.93□□□□□ -0.02
CUX1-218ENST00000560541 TMF1P82094 1093 aa14.93□□□□□ -0.02
CUX1-218ENST00000560541 RSPH4AQ5TD94 716 aa14.93□□□□□ -0.02
CUX1-218ENST00000560541 TCERG1O14776 1098 aaKnown RBP14.92□□□□□ -0.02
CUX1-218ENST00000560541 PREX2Q70Z35 1606 aa14.92□□□□□ -0.02
CUX1-218ENST00000560541 GPRASP1Q5JY77 1395 aa14.91□□□□□ -0.02
CUX1-218ENST00000560541 LAS1LQ9Y4W2 734 aaKnown RBP14.91□□□□□ -0.02
CUX1-218ENST00000560541 ADAMTS8Q9UP79 889 aa14.91□□□□□ -0.02
CUX1-218ENST00000560541 TTC37Q6PGP7 1564 aa14.91□□□□□ -0.02
CUX1-218ENST00000560541 C20orf194Q5TEA3 1177 aa14.9□□□□□ -0.02
CUX1-218ENST00000560541 BACH2Q9BYV9 841 aa14.89□□□□□ -0.03
CUX1-218ENST00000560541 PRDM15P57071 1507 aaPredicted RBP14.88□□□□□ -0.03
CUX1-218ENST00000560541 AEBP2Q6ZN18 517 aaPredicted RBP14.88□□□□□ -0.03
CUX1-218ENST00000560541 BLMP54132 1417 aaPredicted RBP14.87□□□□□ -0.03
CUX1-218ENST00000560541 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP14.87□□□□□ -0.03
CUX1-218ENST00000560541 WASHC2CQ9Y4E1 1318 aa14.87□□□□□ -0.03
CUX1-218ENST00000560541 MYO5CQ9NQX4 1742 aa14.86□□□□□ -0.03
CUX1-218ENST00000560541 UNC13BO14795 1591 aa14.86□□□□□ -0.03
CUX1-218ENST00000560541 KNSTRNQ9Y448 316 aa14.86□□□□□ -0.03
CUX1-218ENST00000560541 NEFMP07197 916 aa14.85□□□□□ -0.03
CUX1-218ENST00000560541 WDR43Q15061 677 aaKnown RBP eCLIP14.85□□□□□ -0.03
CUX1-218ENST00000560541 PPP2R1AP30153 589 aa14.84□□□□□ -0.03
CUX1-218ENST00000560541 MAGI2Q86UL8 1455 aa14.83□□□□□ -0.03
CUX1-218ENST00000560541 PLEKHH1Q9ULM0 1364 aa14.83□□□□□ -0.04
CUX1-218ENST00000560541 IQGAP3Q86VI3 1631 aa14.82□□□□□ -0.04
CUX1-218ENST00000560541 MS4A1P11836 297 aa14.82□□□□□ -0.04
CUX1-218ENST00000560541 CCDC146Q8IYE0 955 aa14.82□□□□□ -0.04
CUX1-218ENST00000560541 RSPH6AQ9H0K4 717 aa14.82□□□□□ -0.04
CUX1-218ENST00000560541 ZMYM4Q5VZL5 1548 aa14.81□□□□□ -0.04
CUX1-218ENST00000560541 RBM10P98175 930 aaKnown RBP14.81□□□□□ -0.04
CUX1-218ENST00000560541 PDE4CQ08493 712 aa14.81□□□□□ -0.04
CUX1-218ENST00000560541 EIF2AK4Q9P2K8 1649 aaKnown RBP14.81□□□□□ -0.04
Retrieved 100 of 20,778 RNA–protein pairs in 47.2 ms