RNA–Protein interactions for RNA: ENST00000559819.5

LRRC28-216, Transcript of leucine rich repeat containing 28, humanhuman

TSL 2

Gene LRRC28, Length 2,712 nt, Biotype retained intron, Subcellular localisation Cytosol, Endoplasmic reticulum .

RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LRRC28-216ENST00000559819 ARID4BQ4LE39 1312 aaPredicted RBP13.71□□□□□ -0.21
LRRC28-216ENST00000559819 RSPH4AQ5TD94 716 aa13.71□□□□□ -0.21
LRRC28-216ENST00000559819 ABCC2Q92887 1545 aa13.7□□□□□ -0.22
LRRC28-216ENST00000559819 CCDC144AA2RUR9 1427 aa13.7□□□□□ -0.22
LRRC28-216ENST00000559819 MYT1Q01538 1121 aa13.7□□□□□ -0.22
LRRC28-216ENST00000559819 PLA2R1Q13018 1463 aa13.69□□□□□ -0.22
LRRC28-216ENST00000559819 PLEKHH2Q8IVE3 1493 aa13.69□□□□□ -0.22
LRRC28-216ENST00000559819 NBPF1Q3BBV0 1214 aa13.68□□□□□ -0.22
LRRC28-216ENST00000559819 MAST1Q9Y2H9 1570 aa13.68□□□□□ -0.22
LRRC28-216ENST00000559819 PRAG1Q86YV5 1406 aa13.68□□□□□ -0.22
LRRC28-216ENST00000559819 UNC13BO14795 1591 aa13.67□□□□□ -0.22
LRRC28-216ENST00000559819 MYO5CQ9NQX4 1742 aa13.66□□□□□ -0.22
LRRC28-216ENST00000559819 PPP4R2Q9NY27 417 aa13.66□□□□□ -0.22
LRRC28-216ENST00000559819 PNISRQ8TF01 805 aaKnown RBP13.65□□□□□ -0.22
LRRC28-216ENST00000559819 A2MP01023 1474 aa13.65□□□□□ -0.22
LRRC28-216ENST00000559819 B4GALNT3Q6L9W6 998 aa13.65□□□□□ -0.22
LRRC28-216ENST00000559819 TMC1Q8TDI8 760 aa13.65□□□□□ -0.22
LRRC28-216ENST00000559819 TRPM1Q7Z4N2 1603 aa13.65□□□□□ -0.23
LRRC28-216ENST00000559819 PLXNC1O60486 1568 aa13.63□□□□□ -0.23
LRRC28-216ENST00000559819 ERICH6BQ5W0A0 696 aa13.63□□□□□ -0.23
LRRC28-216ENST00000559819 SMG6Q86US8 1419 aaKnown RBP13.63□□□□□ -0.23
LRRC28-216ENST00000559819 ZCCHC11Q5TAX3 1644 aaKnown RBP13.62□□□□□ -0.23
LRRC28-216ENST00000559819 IQGAP3Q86VI3 1631 aa13.62□□□□□ -0.23
LRRC28-216ENST00000559819 PLCH2O75038 1416 aa13.62□□□□□ -0.23
LRRC28-216ENST00000559819 ANP32EQ9BTT0 268 aa13.62□□□□□ -0.23
LRRC28-216ENST00000559819 NUDCQ9Y266 331 aa13.62□□□□□ -0.23
LRRC28-216ENST00000559819 TRAPPC8Q9Y2L5 1435 aa13.61□□□□□ -0.23
LRRC28-216ENST00000559819 DUOX2Q9NRD8 1548 aa13.61□□□□□ -0.23
LRRC28-216ENST00000559819 E9PCH4 1651 aa13.61□□□□□ -0.23
LRRC28-216ENST00000559819 MYBBP1AQ9BQG0 1328 aaKnown RBP13.61□□□□□ -0.23
LRRC28-216ENST00000559819 EFCAB2Q5VUJ9 269 aa13.6□□□□□ -0.23
LRRC28-216ENST00000559819 DISP3Q9P2K9 1392 aa13.59□□□□□ -0.23
LRRC28-216ENST00000559819 ERBINQ96RT1 1412 aa13.58□□□□□ -0.23
LRRC28-216ENST00000559819 GPRASP1Q5JY77 1395 aa13.58□□□□□ -0.23
LRRC28-216ENST00000559819 RALBP1Q15311 655 aa13.58□□□□□ -0.24
LRRC28-216ENST00000559819 CLASP1Q7Z460 1538 aa13.58□□□□□ -0.24
LRRC28-216ENST00000559819 MAGI2Q86UL8 1455 aa13.58□□□□□ -0.24
LRRC28-216ENST00000559819 ABCC1P33527 1531 aa13.58□□□□□ -0.24
LRRC28-216ENST00000559819 BRD4O60885 1362 aaPredicted RBP13.58□□□□□ -0.24
LRRC28-216ENST00000559819 LRPPRCP42704 1394 aaKnown RBP13.57□□□□□ -0.24
LRRC28-216ENST00000559819 AFAP1Q8N556 730 aa13.57□□□□□ -0.24
LRRC28-216ENST00000559819 TESK2Q96S53 571 aa13.57□□□□□ -0.24
LRRC28-216ENST00000559819 PRDM15P57071 1507 aaPredicted RBP13.56□□□□□ -0.24
LRRC28-216ENST00000559819 SALL2Q9Y467 1007 aaPredicted RBP13.56□□□□□ -0.24
LRRC28-216ENST00000559819 COL17A1Q9UMD9 1497 aaPredicted RBP13.56□□□□□ -0.24
LRRC28-216ENST00000559819 MSH5O43196 834 aa13.55□□□□□ -0.24
LRRC28-216ENST00000559819 UHRF1BP1LA0JNW5 1464 aa13.55□□□□□ -0.24
LRRC28-216ENST00000559819 PER1O15534 1290 aaPredicted RBP13.55□□□□□ -0.24
LRRC28-216ENST00000559819 KTN1Q86UP2 1357 aaKnown RBP13.55□□□□□ -0.24
LRRC28-216ENST00000559819 CC2D1BQ5T0F9 858 aaKnown RBP13.55□□□□□ -0.24
LRRC28-216ENST00000559819 PARD3Q8TEW0 1356 aa13.55□□□□□ -0.24
LRRC28-216ENST00000559819 SPAG9O60271 1321 aaKnown RBP13.54□□□□□ -0.24
LRRC28-216ENST00000559819 ATP10AO60312 1499 aa13.54□□□□□ -0.24
LRRC28-216ENST00000559819 RNF123Q5XPI4 1314 aa13.53□□□□□ -0.24
LRRC28-216ENST00000559819 PANK3Q9H999 370 aa13.53□□□□□ -0.24
LRRC28-216ENST00000559819 NLRP13Q86W25 1043 aa13.52□□□□□ -0.24
LRRC28-216ENST00000559819 LAMC1P11047 1609 aa13.52□□□□□ -0.24
LRRC28-216ENST00000559819 EIF2AK4Q9P2K8 1649 aaKnown RBP13.52□□□□□ -0.25
LRRC28-216ENST00000559819 ZFYVE16Q7Z3T8 1539 aa13.5□□□□□ -0.25
LRRC28-216ENST00000559819 TMF1P82094 1093 aa13.5□□□□□ -0.25
LRRC28-216ENST00000559819 RNF17Q9BXT8 1623 aaKnown RBP13.48□□□□□ -0.25
LRRC28-216ENST00000559819 MYT1LQ9UL68 1186 aa13.48□□□□□ -0.25
LRRC28-216ENST00000559819 FANCIQ9NVI1 1328 aa13.48□□□□□ -0.25
LRRC28-216ENST00000559819 MADDQ8WXG6 1647 aa13.47□□□□□ -0.25
LRRC28-216ENST00000559819 RTEL1-TNFRSF6BF6WH68 1400 aa13.47□□□□□ -0.25
LRRC28-216ENST00000559819 CCDC136Q96JN2 1154 aa13.47□□□□□ -0.25
LRRC28-216ENST00000559819 WDR7Q9Y4E6 1490 aa13.46□□□□□ -0.25
LRRC28-216ENST00000559819 CLTCL1P53675 1640 aa13.46□□□□□ -0.25
LRRC28-216ENST00000559819 TRPM2O94759 1503 aa13.46□□□□□ -0.26
LRRC28-216ENST00000559819 CDCA7LQ96GN5 454 aa13.45□□□□□ -0.26
LRRC28-216ENST00000559819 FANCAO15360 1455 aa13.45□□□□□ -0.26
LRRC28-216ENST00000559819 KIF3BO15066 747 aa13.44□□□□□ -0.26
LRRC28-216ENST00000559819 PTPRTO14522 1441 aa13.44□□□□□ -0.26
LRRC28-216ENST00000559819 SCAPERQ9BY12 1400 aa13.44□□□□□ -0.26
LRRC28-216ENST00000559819 RRP1P56182 461 aaKnown RBP13.44□□□□□ -0.26
LRRC28-216ENST00000559819 ATP7AQ04656 1500 aa13.44□□□□□ -0.26
LRRC28-216ENST00000559819 ARAP3Q8WWN8 1544 aa13.43□□□□□ -0.26
LRRC28-216ENST00000559819 SPHKAPQ2M3C7 1700 aa13.43□□□□□ -0.26
LRRC28-216ENST00000559819 WASHC2CQ9Y4E1 1318 aa13.43□□□□□ -0.26
LRRC28-216ENST00000559819 RCAN3Q9UKA8 241 aa13.42□□□□□ -0.26
LRRC28-216ENST00000559819 DEPDC5O75140 1603 aa13.42□□□□□ -0.26
LRRC28-216ENST00000559819 IQGAP1P46940 1657 aa13.42□□□□□ -0.26
LRRC28-216ENST00000559819 CEP152O94986 1710 aa13.42□□□□□ -0.26
LRRC28-216ENST00000559819 ABCA9Q8IUA7 1624 aa13.42□□□□□ -0.26
LRRC28-216ENST00000559819 INO80Q9ULG1 1556 aaPredicted RBP13.42□□□□□ -0.26
LRRC28-216ENST00000559819 ADGRL1O94910 1474 aa13.42□□□□□ -0.26
LRRC28-216ENST00000559819 EXOC6Q8TAG9 804 aa13.41□□□□□ -0.26
LRRC28-216ENST00000559819 UGGT1Q9NYU2 1555 aa13.41□□□□□ -0.26
LRRC28-216ENST00000559819 KANK1Q14678 1352 aa13.41□□□□□ -0.26
LRRC28-216ENST00000559819 BLMP54132 1417 aaPredicted RBP13.4□□□□□ -0.26
LRRC28-216ENST00000559819 TET3O43151 1660 aa13.4□□□□□ -0.26
LRRC28-216ENST00000559819 SCAF11Q99590 1463 aaKnown RBP13.4□□□□□ -0.26
LRRC28-216ENST00000559819 KNSTRNQ9Y448 316 aa13.39□□□□□ -0.27
LRRC28-216ENST00000559819 VWDEQ8N2E2 1590 aa13.39□□□□□ -0.27
LRRC28-216ENST00000559819 ASXL2Q76L83 1435 aa13.38□□□□□ -0.27
LRRC28-216ENST00000559819 PDE3BQ13370 1112 aa13.38□□□□□ -0.27
LRRC28-216ENST00000559819 PPP2R1AP30153 589 aa13.38□□□□□ -0.27
LRRC28-216ENST00000559819 CFAP70Q5T0N1 1121 aa13.38□□□□□ -0.27
LRRC28-216ENST00000559819 ADAMTS8Q9UP79 889 aa13.38□□□□□ -0.27
LRRC28-216ENST00000559819 MROH1Q8NDA8 1641 aa13.37□□□□□ -0.27
Retrieved 100 of 20,778 RNA–protein pairs in 32 ms