RNA–Protein interactions for RNA: ENST00000559771.5

USP3-215, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 4

Gene USP3, Length 561 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-215ENST00000559771 UHRF1BP1LA0JNW5 1464 aa10.12□□□□□ -0.79
USP3-215ENST00000559771 UGGT2Q9NYU1 1516 aa10.12□□□□□ -0.79
USP3-215ENST00000559771 KDM6BO15054 1643 aa10.11□□□□□ -0.79
USP3-215ENST00000559771 CARMIL2Q6F5E8 1435 aa10.11□□□□□ -0.79
USP3-215ENST00000559771 KHSRPQ92945 711 aaKnown RBP eCLIP10.11□□□□□ -0.791e-6■■□□□ 14.1
USP3-215ENST00000559771 RAPGEF2Q9Y4G8 1499 aa10.1□□□□□ -0.79
USP3-215ENST00000559771 ZNF316A6NFI3 1004 aaPredicted RBP10.1□□□□□ -0.79
USP3-215ENST00000559771 G3V3G9 751 aa10.1□□□□□ -0.79
USP3-215ENST00000559771 GLI2P10070 1586 aa10.09□□□□□ -0.79
USP3-215ENST00000559771 TTBK1Q5TCY1 1321 aaPredicted RBP10.09□□□□□ -0.79
USP3-215ENST00000559771 ASXL2Q76L83 1435 aa10.09□□□□□ -0.79
USP3-215ENST00000559771 CHRM1P11229 460 aaPredicted RBP10.09□□□□□ -0.79
USP3-215ENST00000559771 UACAQ9BZF9 1416 aa10.08□□□□□ -0.8
USP3-215ENST00000559771 KDM5BQ9UGL1 1544 aa10.08□□□□□ -0.8
USP3-215ENST00000559771 KIAA0556O60303 1618 aa10.08□□□□□ -0.8
USP3-215ENST00000559771 PLB1Q6P1J6 1458 aa10.07□□□□□ -0.8
USP3-215ENST00000559771 KDM4FA0A1W2PPD8 638 aa10.07□□□□□ -0.8
USP3-215ENST00000559771 CABP2Q9NPB3 220 aa10.07□□□□□ -0.8
USP3-215ENST00000559771 ZCCHC11Q5TAX3 1644 aaKnown RBP10.07□□□□□ -0.8
USP3-215ENST00000559771 CTTNBP2Q8WZ74 1663 aa10.06□□□□□ -0.8
USP3-215ENST00000559771 IRX2Q9BZI1 471 aaPredicted RBP10.06□□□□□ -0.8
USP3-215ENST00000559771 MAP3K4Q9Y6R4 1608 aa10.06□□□□□ -0.8
USP3-215ENST00000559771 COL17A1Q9UMD9 1497 aaPredicted RBP10.05□□□□□ -0.8
USP3-215ENST00000559771 EPRSP07814 1512 aaKnown RBP10.05□□□□□ -0.8
USP3-215ENST00000559771 AXIN2Q9Y2T1 843 aa10.04□□□□□ -0.8
USP3-215ENST00000559771 PRXQ9BXM0 1461 aa10.03□□□□□ -0.8
USP3-215ENST00000559771 ABCA8O94911 1581 aa10.01□□□□□ -0.81
USP3-215ENST00000559771 PDAP1Q13442 181 aaKnown RBP10.01□□□□□ -0.81
USP3-215ENST00000559771 RGS20O76081 388 aa10□□□□□ -0.81
USP3-215ENST00000559771 PBX2P40425 430 aa9.99□□□□□ -0.81
USP3-215ENST00000559771 MICALL2Q8IY33 904 aa9.99□□□□□ -0.81
USP3-215ENST00000559771 WDR7Q9Y4E6 1490 aa9.98□□□□□ -0.81
USP3-215ENST00000559771 GOLGA3Q08378 1498 aa9.97□□□□□ -0.81
USP3-215ENST00000559771 ADGRL1O94910 1474 aa9.96□□□□□ -0.82
USP3-215ENST00000559771 ADGRD1Q6QNK2 874 aa9.95□□□□□ -0.82
USP3-215ENST00000559771 TEX14Q8IWB6 1497 aa9.95□□□□□ -0.82
USP3-215ENST00000559771 CFAP43Q8NDM7 1665 aa9.95□□□□□ -0.82
USP3-215ENST00000559771 MAGI3Q5TCQ9 1506 aa9.94□□□□□ -0.82
USP3-215ENST00000559771 GSE1Q14687 1217 aa9.94□□□□□ -0.82
USP3-215ENST00000559771 SAMD9Q5K651 1589 aa9.93□□□□□ -0.82
USP3-215ENST00000559771 HRO43593 1189 aa9.92□□□□□ -0.82
USP3-215ENST00000559771 ATP10BO94823 1461 aa9.91□□□□□ -0.82
USP3-215ENST00000559771 CD109Q6YHK3 1445 aa9.91□□□□□ -0.82
USP3-215ENST00000559771 IFFO2Q5TF58 517 aa9.9□□□□□ -0.82
USP3-215ENST00000559771 KCNH8Q96L42 1107 aa9.9□□□□□ -0.82
USP3-215ENST00000559771 P3H3Q8IVL6 736 aa9.89□□□□□ -0.83
USP3-215ENST00000559771 EFCAB3Q8N7B9 438 aa9.88□□□□□ -0.83
USP3-215ENST00000559771 LHX6Q9UPM6 363 aa9.88□□□□□ -0.83
USP3-215ENST00000559771 ABCA9Q8IUA7 1624 aa9.88□□□□□ -0.83
USP3-215ENST00000559771 ARAP3Q8WWN8 1544 aa9.87□□□□□ -0.83
USP3-215ENST00000559771 RAPGEF6Q8TEU7 1601 aa9.87□□□□□ -0.83
USP3-215ENST00000559771 ARID3CA6NKF2 412 aa9.87□□□□□ -0.83
USP3-215ENST00000559771 KIF21BO75037 1637 aa9.86□□□□□ -0.83
USP3-215ENST00000559771 LCE2BO14633 110 aa9.86□□□□□ -0.83
USP3-215ENST00000559771 NUDT7P0C024 238 aa9.86□□□□□ -0.83
USP3-215ENST00000559771 NUP153P49790 1475 aaKnown RBP9.85□□□□□ -0.83
USP3-215ENST00000559771 MS4A4AQ96JQ5 239 aa9.85□□□□□ -0.83
USP3-215ENST00000559771 HECW2Q9P2P5 1572 aa9.84□□□□□ -0.83
USP3-215ENST00000559771 A0A0G2JS52 829 aa9.84□□□□□ -0.83
USP3-215ENST00000559771 KCTD12Q96CX2 325 aaKnown RBP9.83□□□□□ -0.84
USP3-215ENST00000559771 FRMPD1Q5SYB0 1578 aa9.83□□□□□ -0.84
USP3-215ENST00000559771 EEA1Q15075 1411 aa9.82□□□□□ -0.84
USP3-215ENST00000559771 FHOD3Q2V2M9 1422 aa9.82□□□□□ -0.84
USP3-215ENST00000559771 ARHGAP33O14559 1287 aa9.81□□□□□ -0.84
USP3-215ENST00000559771 DMRTA1Q5VZB9 504 aa9.81□□□□□ -0.84
USP3-215ENST00000559771 ADAMTSL3P82987 1691 aa9.8□□□□□ -0.84
USP3-215ENST00000559771 NEO1Q92859 1461 aa9.79□□□□□ -0.84
USP3-215ENST00000559771 TK2O00142 265 aa9.79□□□□□ -0.84
USP3-215ENST00000559771 RAPGEF3O95398 923 aa9.79□□□□□ -0.84
USP3-215ENST00000559771 PHLDB1Q86UU1 1377 aa9.78□□□□□ -0.84
USP3-215ENST00000559771 RANGAP1P46060 587 aaPredicted RBP9.78□□□□□ -0.84
USP3-215ENST00000559771 Q6ZNB5 142 aa9.78□□□□□ -0.84
USP3-215ENST00000559771 EFCAB5A4FU69 1503 aa9.77□□□□□ -0.84
USP3-215ENST00000559771 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP9.77□□□□□ -0.84
USP3-215ENST00000559771 RICTORQ6R327 1708 aa9.77□□□□□ -0.85
USP3-215ENST00000559771 FAM9AQ8IZU1 332 aaPredicted RBP9.77□□□□□ -0.85
USP3-215ENST00000559771 TTC37Q6PGP7 1564 aa9.76□□□□□ -0.85
USP3-215ENST00000559771 BCORL1Q5H9F3 1711 aa9.76□□□□□ -0.85
USP3-215ENST00000559771 SIGLEC1Q9BZZ2 1709 aa9.76□□□□□ -0.85
USP3-215ENST00000559771 PTPRMP28827 1452 aa9.74□□□□□ -0.85
USP3-215ENST00000559771 CDK13Q14004 1512 aaKnown RBP9.74□□□□□ -0.85
USP3-215ENST00000559771 ARHGEF40Q8TER5 1519 aa9.73□□□□□ -0.85
USP3-215ENST00000559771 PSEN2P49810 448 aa9.73□□□□□ -0.85
USP3-215ENST00000559771 EHMT2Q96KQ7 1210 aa9.73□□□□□ -0.85
USP3-215ENST00000559771 MADDQ8WXG6 1647 aa9.73□□□□□ -0.85
USP3-215ENST00000559771 AKNAQ7Z591 1439 aa9.73□□□□□ -0.85
USP3-215ENST00000559771 FANCAO15360 1455 aa9.72□□□□□ -0.85
USP3-215ENST00000559771 PLEKHD1A6NEE1 506 aa9.72□□□□□ -0.85
USP3-215ENST00000559771 KIF3CO14782 793 aa9.72□□□□□ -0.85
USP3-215ENST00000559771 PTPN5P54829 565 aa9.72□□□□□ -0.85
USP3-215ENST00000559771 PCDHGA4Q9Y5G9 962 aa9.72□□□□□ -0.85
USP3-215ENST00000559771 ARHGAP35Q9NRY4 1499 aa9.72□□□□□ -0.85
USP3-215ENST00000559771 ZMYM4Q5VZL5 1548 aa9.72□□□□□ -0.85
USP3-215ENST00000559771 LRRIQ1Q96JM4 1722 aa9.71□□□□□ -0.85
USP3-215ENST00000559771 DENND4BO75064 1496 aaPredicted RBP9.71□□□□□ -0.86
USP3-215ENST00000559771 CFAP74Q9C0B2 1584 aa9.71□□□□□ -0.86
USP3-215ENST00000559771 KIF14Q15058 1648 aa9.69□□□□□ -0.86
USP3-215ENST00000559771 HECW1Q76N89 1606 aa9.69□□□□□ -0.86
USP3-215ENST00000559771 YEATS2Q9ULM3 1422 aa9.69□□□□□ -0.86
USP3-215ENST00000559771 RIMS1Q86UR5 1692 aaKnown RBP9.68□□□□□ -0.86
Retrieved 100 of 20,778 RNA–protein pairs in 7.5 ms