RNA–Protein interactions for RNA: ENST00000559754.1

SPG11-218, Transcript of SPG11, spatacsin vesicle trafficking associated, humanhuman

APPRIS ALT2 TSL 5

Gene SPG11, Length 411 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SPG11-218ENST00000559754 MYT1LQ9UL68 1186 aa9.99□□□□□ -0.81
SPG11-218ENST00000559754 KCNV2Q8TDN2 545 aa9.97□□□□□ -0.81
SPG11-218ENST00000559754 RNF166Q96A37 237 aaPredicted RBP9.97□□□□□ -0.81
SPG11-218ENST00000559754 NBR1Q14596 966 aa9.96□□□□□ -0.82
SPG11-218ENST00000559754 STAC3Q96MF2 364 aa9.96□□□□□ -0.82
SPG11-218ENST00000559754 PPP1R3GB7ZBB8 358 aa9.95□□□□□ -0.82
SPG11-218ENST00000559754 ZBED2Q9BTP6 218 aa9.94□□□□□ -0.82
SPG11-218ENST00000559754 VPS9D1Q9Y2B5 631 aa9.94□□□□□ -0.82
SPG11-218ENST00000559754 GRXCR2A6NFK2 248 aa9.93□□□□□ -0.82
SPG11-218ENST00000559754 EN1Q05925 392 aaPredicted RBP9.93□□□□□ -0.82
SPG11-218ENST00000559754 C6orf132Q5T0Z8 1188 aa9.93□□□□□ -0.82
SPG11-218ENST00000559754 RBM33Q96EV2 1170 aaKnown RBP9.93□□□□□ -0.82
SPG11-218ENST00000559754 MAP3K7O43318 606 aa9.92□□□□□ -0.82
SPG11-218ENST00000559754 HRO43593 1189 aa9.92□□□□□ -0.82
SPG11-218ENST00000559754 VSIG10Q8N0Z9 540 aa9.9□□□□□ -0.82
SPG11-218ENST00000559754 COL9A1P20849 921 aa9.88□□□□□ -0.83
SPG11-218ENST00000559754 NBPF3Q9H094 633 aa9.88□□□□□ -0.83
SPG11-218ENST00000559754 ONECUT3O60422 494 aaPredicted RBP9.87□□□□□ -0.83
SPG11-218ENST00000559754 OSBPP22059 807 aa9.87□□□□□ -0.83
SPG11-218ENST00000559754 CERKQ8TCT0 537 aa9.87□□□□□ -0.83
SPG11-218ENST00000559754 RABGEF1Q9UJ41 708 aa9.86□□□□□ -0.83
SPG11-218ENST00000559754 BHMG1C9JSJ3 638 aaPredicted RBP9.85□□□□□ -0.83
SPG11-218ENST00000559754 TSR1Q2NL82 804 aaKnown RBP9.85□□□□□ -0.83
SPG11-218ENST00000559754 MRPL50Q8N5N7 158 aaKnown RBP9.85□□□□□ -0.83
SPG11-218ENST00000559754 KDM2AQ9Y2K7 1162 aa9.85□□□□□ -0.83
SPG11-218ENST00000559754 GOLGA8CPA6NN73 597 aa9.84□□□□□ -0.83
SPG11-218ENST00000559754 PROX2Q3B8N5 592 aa9.84□□□□□ -0.83
SPG11-218ENST00000559754 TRIM6-TRIM34B2RNG4 842 aa9.82□□□□□ -0.84
SPG11-218ENST00000559754 MLLT3P42568 568 aaPredicted RBP9.82□□□□□ -0.84
SPG11-218ENST00000559754 PRIM1P49642 420 aaKnown RBP9.81□□□□□ -0.84
SPG11-218ENST00000559754 KIAA1468Q9P260 1216 aa9.81□□□□□ -0.84
SPG11-218ENST00000559754 LAPTM4BQ86VI4 370 aa9.8□□□□□ -0.84
SPG11-218ENST00000559754 KCTD12Q96CX2 325 aaKnown RBP9.8□□□□□ -0.84
SPG11-218ENST00000559754 HCSTQ9UBK5 93 aa9.8□□□□□ -0.84
SPG11-218ENST00000559754 SEMA3EO15041 775 aa9.79□□□□□ -0.84
SPG11-218ENST00000559754 PACS2Q86VP3 889 aa9.79□□□□□ -0.84
SPG11-218ENST00000559754 PRSS12P56730 875 aa9.78□□□□□ -0.84
SPG11-218ENST00000559754 SMYD5Q6GMV2 418 aa9.78□□□□□ -0.84
SPG11-218ENST00000559754 CDCA7LQ96GN5 454 aa9.78□□□□□ -0.84
SPG11-218ENST00000559754 RBM27Q9P2N5 1060 aaKnown RBP9.77□□□□□ -0.85
SPG11-218ENST00000559754 CDHR5Q9HBB8 845 aa9.76□□□□□ -0.85
SPG11-218ENST00000559754 WNT2BQ93097 391 aa9.75□□□□□ -0.85
SPG11-218ENST00000559754 TESPA1A2RU30 521 aaPredicted RBP9.74□□□□□ -0.85
SPG11-218ENST00000559754 ANKK1Q8NFD2 765 aa9.74□□□□□ -0.85
SPG11-218ENST00000559754 TSKSQ9UJT2 592 aa9.74□□□□□ -0.85
SPG11-218ENST00000559754 NBPF26B4DH59 902 aa9.73□□□□□ -0.85
SPG11-218ENST00000559754 FAM98CQ17RN3 349 aaKnown RBP9.73□□□□□ -0.85
SPG11-218ENST00000559754 THSD4Q6ZMP0 1018 aa9.73□□□□□ -0.85
SPG11-218ENST00000559754 SEPT9Q9UHD8 586 aaPredicted RBP9.72□□□□□ -0.85
SPG11-218ENST00000559754 ZFRQ96KR1 1074 aaKnown RBP9.71□□□□□ -0.86
SPG11-218ENST00000559754 NPDC1Q9NQX5 325 aaPredicted RBP9.71□□□□□ -0.86
SPG11-218ENST00000559754 NUTM2FA1L443 756 aa9.7□□□□□ -0.86
SPG11-218ENST00000559754 PTPN5P54829 565 aa9.69□□□□□ -0.86
SPG11-218ENST00000559754 PTGDRQ13258 359 aa9.69□□□□□ -0.86
SPG11-218ENST00000559754 PNMA3Q9UL41 463 aa9.69□□□□□ -0.86
SPG11-218ENST00000559754 TULP1O00294 542 aaPredicted RBP9.68□□□□□ -0.86
SPG11-218ENST00000559754 PADI6Q6TGC4 694 aa9.68□□□□□ -0.86
SPG11-218ENST00000559754 TTC13Q8NBP0 860 aa9.68□□□□□ -0.86
SPG11-218ENST00000559754 TATDN2Q93075 761 aa9.68□□□□□ -0.86
SPG11-218ENST00000559754 FAM198AQ9UFP1 575 aa9.68□□□□□ -0.86
SPG11-218ENST00000559754 SOWAHBA6NEL2 793 aa9.67□□□□□ -0.86
SPG11-218ENST00000559754 FCHSD2O94868 740 aa9.67□□□□□ -0.86
SPG11-218ENST00000559754 NUDT18Q6ZVK8 323 aa9.66□□□□□ -0.86
SPG11-218ENST00000559754 LRCH3Q96II8 777 aa9.65□□□□□ -0.86
SPG11-218ENST00000559754 CDKN2AIPQ9NXV6 580 aaPredicted RBP9.65□□□□□ -0.86
SPG11-218ENST00000559754 SMAPO00193 183 aa9.64□□□□□ -0.87
SPG11-218ENST00000559754 HDGFP51858 240 aaKnown RBP9.64□□□□□ -0.87
SPG11-218ENST00000559754 NYAP1Q6ZVC0 841 aa9.64□□□□□ -0.87
SPG11-218ENST00000559754 BCAMP50895 628 aa9.63□□□□□ -0.87
SPG11-218ENST00000559754 RBM26Q5T8P6 1007 aaKnown RBP9.63□□□□□ -0.87
SPG11-218ENST00000559754 HIC1Q14526 733 aa9.62□□□□□ -0.87
SPG11-218ENST00000559754 TSR3Q9UJK0 312 aaKnown RBP9.61□□□□□ -0.87
SPG11-218ENST00000559754 C3orf80F5H4A9 247 aa9.6□□□□□ -0.87
SPG11-218ENST00000559754 RBM46Q8TBY0 533 aaKnown RBP9.6□□□□□ -0.87
SPG11-218ENST00000559754 PLA2G2EQ9NZK7 142 aa9.6□□□□□ -0.87
SPG11-218ENST00000559754 SLC4A3P48751 1232 aa9.59□□□□□ -0.87
SPG11-218ENST00000559754 SAMD7Q7Z3H4 446 aa9.59□□□□□ -0.87
SPG11-218ENST00000559754 PPP4CP60510 307 aa9.58□□□□□ -0.88
SPG11-218ENST00000559754 GPIHBP1Q8IV16 184 aa9.58□□□□□ -0.88
SPG11-218ENST00000559754 EYA1Q99502 592 aa9.58□□□□□ -0.88
SPG11-218ENST00000559754 HPS5Q9UPZ3 1129 aa9.58□□□□□ -0.88
SPG11-218ENST00000559754 GNPATO15228 680 aa9.57□□□□□ -0.88
SPG11-218ENST00000559754 NECTIN2Q92692 538 aa9.57□□□□□ -0.88
SPG11-218ENST00000559754 WBP1LQ9NX94 342 aa9.56□□□□□ -0.88
SPG11-218ENST00000559754 ADGRG1Q9Y653 693 aa9.56□□□□□ -0.88
SPG11-218ENST00000559754 OATP04181 439 aa9.55□□□□□ -0.88
SPG11-218ENST00000559754 DNAJB2P25686 324 aa9.55□□□□□ -0.88
SPG11-218ENST00000559754 SLF2Q8IX21 1173 aa9.55□□□□□ -0.88
SPG11-218ENST00000559754 RNF40O75150 1001 aa9.53□□□□□ -0.88
SPG11-218ENST00000559754 SWT1Q5T5J6 900 aaKnown RBP9.53□□□□□ -0.88
SPG11-218ENST00000559754 GPR37O15354 613 aa9.52□□□□□ -0.89
SPG11-218ENST00000559754 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP9.51□□□□□ -0.89
SPG11-218ENST00000559754 IFFO2Q5TF58 517 aa9.51□□□□□ -0.89
SPG11-218ENST00000559754 RCCD1A6NED2 376 aa9.5□□□□□ -0.89
SPG11-218ENST00000559754 TMEM134Q9H6X4 195 aa9.5□□□□□ -0.89
SPG11-218ENST00000559754 FAM161AQ3B820 660 aa9.49□□□□□ -0.89
SPG11-218ENST00000559754 PXYLP1Q8TE99 480 aa9.49□□□□□ -0.89
SPG11-218ENST00000559754 ITGBL1O95965 494 aaPredicted RBP9.48□□□□□ -0.89
SPG11-218ENST00000559754 FECHP22830 423 aa9.47□□□□□ -0.89
SPG11-218ENST00000559754 DHX30Q7L2E3 1194 aaKnown RBP eCLIP9.47□□□□□ -0.89
Retrieved 100 of 20,778 RNA–protein pairs in 47.9 ms