RNA–Protein interactions for RNA: ENST00000558400.1

TPM1-213, Transcript of tropomyosin 1, humanhuman

TSL 2

Gene TPM1, Length 658 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TPM1-213ENST00000558400 KIF3BO15066 747 aa13.02□□□□□ -0.33
TPM1-213ENST00000558400 FAM50AQ14320 339 aaKnown RBP13.02□□□□□ -0.33
TPM1-213ENST00000558400 INO80Q9ULG1 1556 aaPredicted RBP13.01□□□□□ -0.33
TPM1-213ENST00000558400 C3P01024 1663 aa13□□□□□ -0.33
TPM1-213ENST00000558400 MED1Q15648 1581 aaPredicted RBP12.99□□□□□ -0.33
TPM1-213ENST00000558400 TCOF1Q13428 1488 aaKnown RBP12.99□□□□□ -0.33
TPM1-213ENST00000558400 CEBPAP49715 358 aaPredicted RBP12.99□□□□□ -0.33
TPM1-213ENST00000558400 ABCC5O15440 1437 aa12.98□□□□□ -0.33
TPM1-213ENST00000558400 ZMYM3Q14202 1370 aa12.97□□□□□ -0.33
TPM1-213ENST00000558400 ADGBQ8N7X0 1667 aa12.97□□□□□ -0.33
TPM1-213ENST00000558400 RRP7BPQ9NSQ0 103 aa12.97□□□□□ -0.33
TPM1-213ENST00000558400 PTPN23Q9H3S7 1636 aa12.97□□□□□ -0.33
TPM1-213ENST00000558400 ANKRD30AQ9BXX3 1397 aa12.96□□□□□ -0.33
TPM1-213ENST00000558400 WASHC2CQ9Y4E1 1318 aa12.96□□□□□ -0.33
TPM1-213ENST00000558400 PPARGC1BQ86YN6 1023 aaKnown RBP12.96□□□□□ -0.33
TPM1-213ENST00000558400 CHIC2Q9UKJ5 165 aa12.96□□□□□ -0.33
TPM1-213ENST00000558400 DAPK1P53355 1430 aa12.96□□□□□ -0.34
TPM1-213ENST00000558400 PLXNC1O60486 1568 aa12.95□□□□□ -0.34
TPM1-213ENST00000558400 MAST1Q9Y2H9 1570 aa12.95□□□□□ -0.34
TPM1-213ENST00000558400 SHANK2Q9UPX8 1470 aa12.95□□□□□ -0.34
TPM1-213ENST00000558400 NCOA1Q15788 1441 aa12.95□□□□□ -0.34
TPM1-213ENST00000558400 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP12.94□□□□□ -0.34
TPM1-213ENST00000558400 KIF15Q9NS87 1388 aa12.94□□□□□ -0.34
TPM1-213ENST00000558400 DUOX2Q9NRD8 1548 aa12.92□□□□□ -0.34
TPM1-213ENST00000558400 NPATQ14207 1427 aa12.91□□□□□ -0.34
TPM1-213ENST00000558400 DNMT1P26358 1616 aaKnown RBP12.9□□□□□ -0.34
TPM1-213ENST00000558400 FAM135AQ9P2D6 1515 aa12.89□□□□□ -0.35
TPM1-213ENST00000558400 CAMSAP1Q5T5Y3 1602 aa12.89□□□□□ -0.35
TPM1-213ENST00000558400 ERBINQ96RT1 1412 aa12.88□□□□□ -0.35
TPM1-213ENST00000558400 UBAP1LF5GYI3 381 aa12.88□□□□□ -0.35
TPM1-213ENST00000558400 KANK1Q14678 1352 aa12.88□□□□□ -0.35
TPM1-213ENST00000558400 GRWD1Q9BQ67 446 aaKnown RBP eCLIP12.87□□□□□ -0.351e-7■■■■□ 19.6
TPM1-213ENST00000558400 ZNF142P52746 1687 aaPredicted RBP12.86□□□□□ -0.35
TPM1-213ENST00000558400 ADGRL2O95490 1459 aa12.86□□□□□ -0.35
TPM1-213ENST00000558400 ROCK1Q13464 1354 aa12.86□□□□□ -0.35
TPM1-213ENST00000558400 ITGAEP38570 1179 aa12.86□□□□□ -0.35
TPM1-213ENST00000558400 PTPRKQ15262 1439 aa12.86□□□□□ -0.35
TPM1-213ENST00000558400 MROH2AA6NES4 1674 aa12.86□□□□□ -0.35
TPM1-213ENST00000558400 ANKRD50Q9ULJ7 1429 aa12.85□□□□□ -0.35
TPM1-213ENST00000558400 KDM5DQ9BY66 1539 aa12.84□□□□□ -0.35
TPM1-213ENST00000558400 FBXO31Q5XUX0 539 aaPredicted RBP12.84□□□□□ -0.35
TPM1-213ENST00000558400 RRBP1Q9P2E9 1410 aaKnown RBP12.84□□□□□ -0.35
TPM1-213ENST00000558400 ZNF335Q9H4Z2 1342 aaPredicted RBP12.84□□□□□ -0.35
TPM1-213ENST00000558400 EIF2AK4Q9P2K8 1649 aaKnown RBP12.84□□□□□ -0.35
TPM1-213ENST00000558400 MYO3AQ8NEV4 1616 aa12.82□□□□□ -0.36
TPM1-213ENST00000558400 PZPP20742 1482 aa12.82□□□□□ -0.36
TPM1-213ENST00000558400 CROCC2H7BZ55 1655 aa12.82□□□□□ -0.36
TPM1-213ENST00000558400 CLTCQ00610 1675 aaKnown RBP12.82□□□□□ -0.36
TPM1-213ENST00000558400 TNRQ92752 1358 aa12.81□□□□□ -0.36
TPM1-213ENST00000558400 THEMISQ8N1K5 641 aaPredicted RBP12.81□□□□□ -0.36
TPM1-213ENST00000558400 RNF17Q9BXT8 1623 aaKnown RBP12.8□□□□□ -0.36
TPM1-213ENST00000558400 PLA2R1Q13018 1463 aa12.8□□□□□ -0.36
TPM1-213ENST00000558400 PKD2Q13563 968 aa12.8□□□□□ -0.36
TPM1-213ENST00000558400 ARHGAP31Q2M1Z3 1444 aa12.79□□□□□ -0.36
TPM1-213ENST00000558400 HSPA1LP34931 641 aa12.79□□□□□ -0.36
TPM1-213ENST00000558400 SCAF1Q9H7N4 1312 aaKnown RBP12.79□□□□□ -0.36
TPM1-213ENST00000558400 ABCC3O15438 1527 aa12.78□□□□□ -0.36
TPM1-213ENST00000558400 CEP170BQ9Y4F5 1589 aaPredicted RBP12.77□□□□□ -0.37
TPM1-213ENST00000558400 POLR1AO95602 1720 aaPredicted RBP12.76□□□□□ -0.37
TPM1-213ENST00000558400 NLRP1Q9C000 1473 aa12.76□□□□□ -0.37
TPM1-213ENST00000558400 PRDM15P57071 1507 aaPredicted RBP12.76□□□□□ -0.37
TPM1-213ENST00000558400 ZC3H13Q5T200 1668 aaKnown RBP12.76□□□□□ -0.37
TPM1-213ENST00000558400 A2ML1A8K2U0 1454 aa12.75□□□□□ -0.37
TPM1-213ENST00000558400 ANKLE2Q86XL3 938 aa12.75□□□□□ -0.37
TPM1-213ENST00000558400 NCKAP5LQ9HCH0 1330 aa12.75□□□□□ -0.37
TPM1-213ENST00000558400 SLC52A1Q9NWF4 448 aa12.75□□□□□ -0.37
TPM1-213ENST00000558400 ACIN1Q9UKV3 1341 aaKnown RBP12.75□□□□□ -0.37
TPM1-213ENST00000558400 MROH1Q8NDA8 1641 aa12.74□□□□□ -0.37
TPM1-213ENST00000558400 CPS1P31327 1500 aa12.74□□□□□ -0.37
TPM1-213ENST00000558400 LMTK2Q8IWU2 1503 aa12.74□□□□□ -0.37
TPM1-213ENST00000558400 NUP155O75694 1391 aa12.74□□□□□ -0.37
TPM1-213ENST00000558400 STAG3Q9UJ98 1225 aa12.73□□□□□ -0.37
TPM1-213ENST00000558400 DEPDC5O75140 1603 aa12.73□□□□□ -0.37
TPM1-213ENST00000558400 ERVK-7P63135 1459 aa12.72□□□□□ -0.37
TPM1-213ENST00000558400 VWDEQ8N2E2 1590 aa12.72□□□□□ -0.37
TPM1-213ENST00000558400 ALKQ9UM73 1620 aa12.71□□□□□ -0.37
TPM1-213ENST00000558400 PIP4K2BP78356 416 aa12.71□□□□□ -0.37
TPM1-213ENST00000558400 IDI1Q13907 227 aa12.71□□□□□ -0.37
TPM1-213ENST00000558400 RPRD2Q5VT52 1461 aaKnown RBP12.71□□□□□ -0.38
TPM1-213ENST00000558400 TOM1O60784 492 aa12.7□□□□□ -0.38
TPM1-213ENST00000558400 PPP4R3CPQ6ZMV5 832 aa12.7□□□□□ -0.38
TPM1-213ENST00000558400 NAIPQ13075 1403 aa12.7□□□□□ -0.38
TPM1-213ENST00000558400 HDGFP51858 240 aaKnown RBP12.69□□□□□ -0.38
TPM1-213ENST00000558400 TRIM52Q96A61 297 aa12.69□□□□□ -0.38
TPM1-213ENST00000558400 EID1Q9Y6B2 187 aa12.69□□□□□ -0.38
TPM1-213ENST00000558400 NEURL4Q96JN8 1562 aa12.69□□□□□ -0.38
TPM1-213ENST00000558400 UGGT1Q9NYU2 1555 aa12.69□□□□□ -0.38
TPM1-213ENST00000558400 HFM1A2PYH4 1435 aa12.68□□□□□ -0.38
TPM1-213ENST00000558400 NOS1P29475 1434 aa12.68□□□□□ -0.38
TPM1-213ENST00000558400 CEP152O94986 1710 aa12.67□□□□□ -0.38
TPM1-213ENST00000558400 TXNDC2Q86VQ3 553 aa12.66□□□□□ -0.38
TPM1-213ENST00000558400 CFAP65Q6ZU64 1925 aaKnown RBP12.65□□□□□ -0.38
TPM1-213ENST00000558400 EFCAB6Q5THR3 1501 aa12.65□□□□□ -0.38
TPM1-213ENST00000558400 UNC13BO14795 1591 aa12.64□□□□□ -0.39
TPM1-213ENST00000558400 SLC4A1APQ9BWU0 796 aaKnown RBP12.64□□□□□ -0.39
TPM1-213ENST00000558400 TET3O43151 1660 aa12.62□□□□□ -0.39
TPM1-213ENST00000558400 TMEM2Q9UHN6 1383 aa12.62□□□□□ -0.39
TPM1-213ENST00000558400 SETD1AO15047 1707 aaKnown RBP12.62□□□□□ -0.39
TPM1-213ENST00000558400 SYNMO15061 1565 aa12.61□□□□□ -0.39
TPM1-213ENST00000558400 MED14O60244 1454 aa12.61□□□□□ -0.39
Retrieved 100 of 20,778 RNA–protein pairs in 8.1 ms