RNA–Protein interactions for RNA: ENST00000558338.1

VPS13C-206, Transcript of vacuolar protein sorting 13 homolog C, humanhuman

TSL 2

Gene VPS13C, Length 1,863 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13C-206ENST00000558338 ZBTB12Q9Y330 459 aaPredicted RBP10.17□□□□□ -0.78
VPS13C-206ENST00000558338 ANKRD50Q9ULJ7 1429 aa10.16□□□□□ -0.78
VPS13C-206ENST00000558338 VSIG10Q8N0Z9 540 aa10.16□□□□□ -0.78
VPS13C-206ENST00000558338 HSPA5P11021 654 aaKnown RBP10.15□□□□□ -0.79
VPS13C-206ENST00000558338 L3MBTL2Q969R5 705 aa10.15□□□□□ -0.79
VPS13C-206ENST00000558338 FOXD4L1Q9NU39 408 aa10.15□□□□□ -0.79
VPS13C-206ENST00000558338 CCDC141Q6ZP82 1450 aa10.15□□□□□ -0.79
VPS13C-206ENST00000558338 MBD5Q9P267 1494 aa10.15□□□□□ -0.79
VPS13C-206ENST00000558338 CNTLNQ9NXG0 1405 aa10.14□□□□□ -0.79
VPS13C-206ENST00000558338 MAST1Q9Y2H9 1570 aa10.14□□□□□ -0.79
VPS13C-206ENST00000558338 HIRIP3Q9BW71 556 aaPredicted RBP10.14□□□□□ -0.79
VPS13C-206ENST00000558338 ZNF777Q9ULD5 760 aaPredicted RBP10.14□□□□□ -0.79
VPS13C-206ENST00000558338 EVX2Q03828 476 aa10.13□□□□□ -0.79
VPS13C-206ENST00000558338 RSPH4AQ5TD94 716 aa10.13□□□□□ -0.79
VPS13C-206ENST00000558338 CDC42BPBQ9Y5S2 1711 aa10.13□□□□□ -0.79
VPS13C-206ENST00000558338 ABCC2Q92887 1545 aa10.13□□□□□ -0.79
VPS13C-206ENST00000558338 ARHGEF12Q9NZN5 1544 aa10.13□□□□□ -0.79
VPS13C-206ENST00000558338 TSPY4P0CV99 314 aa10.13□□□□□ -0.79
VPS13C-206ENST00000558338 TSPY10P0CW01 314 aa10.13□□□□□ -0.79
VPS13C-206ENST00000558338 SAMD9LQ8IVG5 1584 aa10.12□□□□□ -0.79
VPS13C-206ENST00000558338 PLEKHH2Q8IVE3 1493 aa10.12□□□□□ -0.79
VPS13C-206ENST00000558338 OSCARQ8IYS5 282 aa10.12□□□□□ -0.79
VPS13C-206ENST00000558338 MYO5CQ9NQX4 1742 aa10.12□□□□□ -0.79
VPS13C-206ENST00000558338 SUPT16HQ9Y5B9 1047 aaKnown RBP10.11□□□□□ -0.79
VPS13C-206ENST00000558338 WASHC2AQ641Q2 1341 aa10.11□□□□□ -0.79
VPS13C-206ENST00000558338 KCNH8Q96L42 1107 aa10.1□□□□□ -0.79
VPS13C-206ENST00000558338 CCDC7Q96M83 1385 aa10.1□□□□□ -0.79
VPS13C-206ENST00000558338 KIF15Q9NS87 1388 aa10.1□□□□□ -0.79
VPS13C-206ENST00000558338 LHX8Q68G74 356 aa10.1□□□□□ -0.79
VPS13C-206ENST00000558338 PLXNC1O60486 1568 aa10.1□□□□□ -0.79
VPS13C-206ENST00000558338 SPATA31E1Q6ZUB1 1445 aa10.09□□□□□ -0.79
VPS13C-206ENST00000558338 UHRF1BP1Q6BDS2 1440 aa10.09□□□□□ -0.79
VPS13C-206ENST00000558338 ARHGAP5Q13017 1502 aa10.09□□□□□ -0.79
VPS13C-206ENST00000558338 UNC13BO14795 1591 aa10.08□□□□□ -0.8
VPS13C-206ENST00000558338 NUP155O75694 1391 aa10.08□□□□□ -0.8
VPS13C-206ENST00000558338 CLASP1Q7Z460 1538 aa10.08□□□□□ -0.8
VPS13C-206ENST00000558338 TTC37Q6PGP7 1564 aa10.08□□□□□ -0.8
VPS13C-206ENST00000558338 PKD2Q13563 968 aa10.08□□□□□ -0.8
VPS13C-206ENST00000558338 UHRF1BP1LA0JNW5 1464 aa10.07□□□□□ -0.8
VPS13C-206ENST00000558338 RALGAPBQ86X10 1494 aa10.07□□□□□ -0.8
VPS13C-206ENST00000558338 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP10.07□□□□□ -0.8
VPS13C-206ENST00000558338 SYCP2Q9BX26 1530 aa10.07□□□□□ -0.8
VPS13C-206ENST00000558338 NBPF8Q3BBV2 869 aa10.06□□□□□ -0.8
VPS13C-206ENST00000558338 ARID4BQ4LE39 1312 aaPredicted RBP10.06□□□□□ -0.8
VPS13C-206ENST00000558338 NEFLP07196 543 aa10.06□□□□□ -0.8
VPS13C-206ENST00000558338 KDM5CP41229 1560 aa10.06□□□□□ -0.8
VPS13C-206ENST00000558338 FAM135AQ9P2D6 1515 aa10.05□□□□□ -0.8
VPS13C-206ENST00000558338 ZCCHC11Q5TAX3 1644 aaKnown RBP10.05□□□□□ -0.8
VPS13C-206ENST00000558338 ERICH6Q7L0X2 663 aa10.04□□□□□ -0.8
VPS13C-206ENST00000558338 ATF5Q9Y2D1 282 aaPredicted RBP10.04□□□□□ -0.8
VPS13C-206ENST00000558338 USP47Q96K76 1375 aa10.04□□□□□ -0.8
VPS13C-206ENST00000558338 IQGAP3Q86VI3 1631 aa10.04□□□□□ -0.8
VPS13C-206ENST00000558338 ARAP3Q8WWN8 1544 aa10.03□□□□□ -0.8
VPS13C-206ENST00000558338 DUOX2Q9NRD8 1548 aa10.03□□□□□ -0.8
VPS13C-206ENST00000558338 ROCK2O75116 1388 aaKnown RBP10.03□□□□□ -0.8
VPS13C-206ENST00000558338 HNRNPMP52272 730 aaKnown RBP eCLIP10.03□□□□□ -0.8
VPS13C-206ENST00000558338 KIF7Q2M1P5 1343 aa10.02□□□□□ -0.8
VPS13C-206ENST00000558338 KDM2AQ9Y2K7 1162 aa10.02□□□□□ -0.8
VPS13C-206ENST00000558338 ERBINQ96RT1 1412 aa10.02□□□□□ -0.81
VPS13C-206ENST00000558338 ERCC6L2Q5T890 1561 aa10.02□□□□□ -0.81
VPS13C-206ENST00000558338 MAGI2Q86UL8 1455 aa10.01□□□□□ -0.81
VPS13C-206ENST00000558338 PLCH2O75038 1416 aa10.01□□□□□ -0.81
VPS13C-206ENST00000558338 ABCC1P33527 1531 aa10.01□□□□□ -0.81
VPS13C-206ENST00000558338 PRKRIP1Q9H875 184 aaPredicted RBP10□□□□□ -0.81
VPS13C-206ENST00000558338 LAMC1P11047 1609 aa10□□□□□ -0.81
VPS13C-206ENST00000558338 EIF2AK4Q9P2K8 1649 aaKnown RBP10□□□□□ -0.81
VPS13C-206ENST00000558338 CCDC144AA2RUR9 1427 aa10□□□□□ -0.81
VPS13C-206ENST00000558338 PODXL2Q9NZ53 605 aa10□□□□□ -0.81
VPS13C-206ENST00000558338 BCORL1Q5H9F3 1711 aa9.99□□□□□ -0.81
VPS13C-206ENST00000558338 HNRNPUQ00839 825 aaKnown RBP eCLIP9.98□□□□□ -0.81
VPS13C-206ENST00000558338 TMEM132AQ24JP5 1023 aa9.98□□□□□ -0.81
VPS13C-206ENST00000558338 ATP10AO60312 1499 aa9.98□□□□□ -0.81
VPS13C-206ENST00000558338 TRPM1Q7Z4N2 1603 aa9.98□□□□□ -0.81
VPS13C-206ENST00000558338 C11orf95C9JLR9 678 aaPredicted RBP9.98□□□□□ -0.81
VPS13C-206ENST00000558338 EFCAB2Q5VUJ9 269 aa9.97□□□□□ -0.81
VPS13C-206ENST00000558338 ZNF326Q5BKZ1 582 aaKnown RBP9.96□□□□□ -0.81
VPS13C-206ENST00000558338 RTEL1-TNFRSF6BF6WH68 1400 aa9.96□□□□□ -0.82
VPS13C-206ENST00000558338 KTN1Q86UP2 1357 aaKnown RBP9.96□□□□□ -0.82
VPS13C-206ENST00000558338 CARD11Q9BXL7 1154 aa9.96□□□□□ -0.82
VPS13C-206ENST00000558338 PRAG1Q86YV5 1406 aa9.95□□□□□ -0.82
VPS13C-206ENST00000558338 E9PCH4 1651 aa9.95□□□□□ -0.82
VPS13C-206ENST00000558338 MRS2Q9HD23 443 aa9.95□□□□□ -0.82
VPS13C-206ENST00000558338 DHX29Q7Z478 1369 aaKnown RBP9.94□□□□□ -0.82
VPS13C-206ENST00000558338 ZBED9Q6R2W3 1325 aa9.94□□□□□ -0.82
VPS13C-206ENST00000558338 ERICH6BQ5W0A0 696 aa9.93□□□□□ -0.82
VPS13C-206ENST00000558338 ABCA9Q8IUA7 1624 aa9.93□□□□□ -0.82
VPS13C-206ENST00000558338 ZFYVE16Q7Z3T8 1539 aa9.93□□□□□ -0.82
VPS13C-206ENST00000558338 GPRASP1Q5JY77 1395 aa9.93□□□□□ -0.82
VPS13C-206ENST00000558338 WDR7Q9Y4E6 1490 aa9.93□□□□□ -0.82
VPS13C-206ENST00000558338 DEPDC5O75140 1603 aa9.92□□□□□ -0.82
VPS13C-206ENST00000558338 DCAF11Q8TEB1 546 aa9.92□□□□□ -0.82
VPS13C-206ENST00000558338 PRDM15P57071 1507 aaPredicted RBP9.92□□□□□ -0.82
VPS13C-206ENST00000558338 A2MP01023 1474 aa9.92□□□□□ -0.82
VPS13C-206ENST00000558338 PLA2R1Q13018 1463 aa9.92□□□□□ -0.82
VPS13C-206ENST00000558338 RNF17Q9BXT8 1623 aaKnown RBP9.91□□□□□ -0.82
VPS13C-206ENST00000558338 INO80Q9ULG1 1556 aaPredicted RBP9.91□□□□□ -0.82
VPS13C-206ENST00000558338 MYT1Q01538 1121 aa9.9□□□□□ -0.82
VPS13C-206ENST00000558338 TRPM2O94759 1503 aa9.9□□□□□ -0.82
VPS13C-206ENST00000558338 TET3O43151 1660 aa9.9□□□□□ -0.83
VPS13C-206ENST00000558338 CEP152O94986 1710 aa9.9□□□□□ -0.83
Retrieved 100 of 20,778 RNA–protein pairs in 6.9 ms