RNA–Protein interactions for RNA: ENST00000558088.1

VPS13C-205, Transcript of vacuolar protein sorting 13 homolog C, humanhuman

TSL 2

Gene VPS13C, Length 549 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13C-205ENST00000558088 BHMG1C9JSJ3 638 aaPredicted RBP8.32□□□□□ -1.08
VPS13C-205ENST00000558088 EPAS1Q99814 870 aa8.32□□□□□ -1.08
VPS13C-205ENST00000558088 THSD4Q6ZMP0 1018 aa8.31□□□□□ -1.08
VPS13C-205ENST00000558088 RABGEF1Q9UJ41 708 aa8.3□□□□□ -1.08
VPS13C-205ENST00000558088 ANKK1Q8NFD2 765 aa8.28□□□□□ -1.08
VPS13C-205ENST00000558088 PROX2Q3B8N5 592 aa8.27□□□□□ -1.09
VPS13C-205ENST00000558088 WDR70Q9NW82 654 aa8.27□□□□□ -1.09
VPS13C-205ENST00000558088 COL9A1P20849 921 aa8.26□□□□□ -1.09
VPS13C-205ENST00000558088 C6orf132Q5T0Z8 1188 aa8.26□□□□□ -1.09
VPS13C-205ENST00000558088 DDX12PQ92771 950 aa8.26□□□□□ -1.09
VPS13C-205ENST00000558088 CFAP44Q96MT7 982 aa8.26□□□□□ -1.09
VPS13C-205ENST00000558088 SPDYE16A6NNV3 312 aaPredicted RBP8.25□□□□□ -1.09
VPS13C-205ENST00000558088 PAXIP1Q6ZW49 1069 aaPredicted RBP8.25□□□□□ -1.09
VPS13C-205ENST00000558088 LAPTM4BQ86VI4 370 aa8.25□□□□□ -1.09
VPS13C-205ENST00000558088 RBM33Q96EV2 1170 aaKnown RBP8.25□□□□□ -1.09
VPS13C-205ENST00000558088 RTN4Q9NQC3 1192 aaKnown RBP8.25□□□□□ -1.09
VPS13C-205ENST00000558088 MAP3K7O43318 606 aa8.23□□□□□ -1.09
VPS13C-205ENST00000558088 ONECUT3O60422 494 aaPredicted RBP8.23□□□□□ -1.09
VPS13C-205ENST00000558088 NBR1Q14596 966 aa8.23□□□□□ -1.09
VPS13C-205ENST00000558088 PDIA6Q15084 440 aa8.23□□□□□ -1.09
VPS13C-205ENST00000558088 E2F4Q16254 413 aa8.23□□□□□ -1.09
VPS13C-205ENST00000558088 KIAA1468Q9P260 1216 aa8.23□□□□□ -1.09
VPS13C-205ENST00000558088 TRIM6-TRIM34B2RNG4 842 aa8.21□□□□□ -1.1
VPS13C-205ENST00000558088 EN1Q05925 392 aaPredicted RBP8.2□□□□□ -1.1
VPS13C-205ENST00000558088 IFFO2Q5TF58 517 aa8.2□□□□□ -1.1
VPS13C-205ENST00000558088 FAM98CQ17RN3 349 aaKnown RBP8.19□□□□□ -1.1
VPS13C-205ENST00000558088 NYAP1Q6ZVC0 841 aa8.19□□□□□ -1.1
VPS13C-205ENST00000558088 PACS2Q86VP3 889 aa8.19□□□□□ -1.1
VPS13C-205ENST00000558088 ZFRQ96KR1 1074 aaKnown RBP8.19□□□□□ -1.1
VPS13C-205ENST00000558088 SEPT9Q9UHD8 586 aaPredicted RBP8.19□□□□□ -1.1
VPS13C-205ENST00000558088 SOWAHBA6NEL2 793 aa8.18□□□□□ -1.1
VPS13C-205ENST00000558088 BCAMP50895 628 aa8.18□□□□□ -1.1
VPS13C-205ENST00000558088 RGS20O76081 388 aa8.16□□□□□ -1.1
VPS13C-205ENST00000558088 CERKQ8TCT0 537 aa8.16□□□□□ -1.1
VPS13C-205ENST00000558088 LRCH3Q96II8 777 aa8.16□□□□□ -1.1
VPS13C-205ENST00000558088 GRXCR2A6NFK2 248 aa8.15□□□□□ -1.1
VPS13C-205ENST00000558088 TSR1Q2NL82 804 aaKnown RBP8.15□□□□□ -1.1
VPS13C-205ENST00000558088 CDKN2AIPQ9NXV6 580 aaPredicted RBP8.15□□□□□ -1.1
VPS13C-205ENST00000558088 ARIH1Q9Y4X5 557 aaPredicted RBP8.15□□□□□ -1.1
VPS13C-205ENST00000558088 A0A0G2JS52 829 aa8.14□□□□□ -1.11
VPS13C-205ENST00000558088 WBP1LQ9NX94 342 aa8.12□□□□□ -1.11
VPS13C-205ENST00000558088 TSR3Q9UJK0 312 aaKnown RBP8.12□□□□□ -1.11
VPS13C-205ENST00000558088 NBPF26B4DH59 902 aa8.11□□□□□ -1.11
VPS13C-205ENST00000558088 ITGBL1O95965 494 aaPredicted RBP8.11□□□□□ -1.11
VPS13C-205ENST00000558088 PRSS12P56730 875 aa8.11□□□□□ -1.11
VPS13C-205ENST00000558088 CDCA7LQ96GN5 454 aa8.11□□□□□ -1.11
VPS13C-205ENST00000558088 TSKSQ9UJT2 592 aa8.11□□□□□ -1.11
VPS13C-205ENST00000558088 HPS5Q9UPZ3 1129 aa8.11□□□□□ -1.11
VPS13C-205ENST00000558088 KCNC4Q03721 635 aa8.09□□□□□ -1.11
VPS13C-205ENST00000558088 HDGFP51858 240 aaKnown RBP8.08□□□□□ -1.12
VPS13C-205ENST00000558088 PPP4CP60510 307 aa8.08□□□□□ -1.12
VPS13C-205ENST00000558088 OSBPP22059 807 aa8.06□□□□□ -1.12
VPS13C-205ENST00000558088 RBM27Q9P2N5 1060 aaKnown RBP8.06□□□□□ -1.12
VPS13C-205ENST00000558088 PNMA3Q9UL41 463 aa8.06□□□□□ -1.12
VPS13C-205ENST00000558088 SMAPO00193 183 aa8.05□□□□□ -1.12
VPS13C-205ENST00000558088 SAMD7Q7Z3H4 446 aa8.05□□□□□ -1.12
VPS13C-205ENST00000558088 TATDN2Q93075 761 aa8.05□□□□□ -1.12
VPS13C-205ENST00000558088 IRX2Q9BZI1 471 aaPredicted RBP8.05□□□□□ -1.12
VPS13C-205ENST00000558088 SLC4A3P48751 1232 aa8.04□□□□□ -1.12
VPS13C-205ENST00000558088 RNF40O75150 1001 aa8.03□□□□□ -1.12
VPS13C-205ENST00000558088 PRIM1P49642 420 aaKnown RBP8.03□□□□□ -1.12
VPS13C-205ENST00000558088 NECTIN2Q92692 538 aa8.03□□□□□ -1.12
VPS13C-205ENST00000558088 ARHGEF1Q92888 912 aaKnown RBP8.03□□□□□ -1.12
VPS13C-205ENST00000558088 CDHR5Q9HBB8 845 aa8.03□□□□□ -1.12
VPS13C-205ENST00000558088 NUDT18Q6ZVK8 323 aa8.02□□□□□ -1.13
VPS13C-205ENST00000558088 TSHZ2Q9NRE2 1034 aa8.01□□□□□ -1.13
VPS13C-205ENST00000558088 FAM198AQ9UFP1 575 aa8.01□□□□□ -1.13
VPS13C-205ENST00000558088 PADI6Q6TGC4 694 aa7.98□□□□□ -1.13
VPS13C-205ENST00000558088 P3H3Q8IVL6 736 aa7.98□□□□□ -1.13
VPS13C-205ENST00000558088 SLF2Q8IX21 1173 aa7.98□□□□□ -1.13
VPS13C-205ENST00000558088 IL21Q9HBE4 155 aa7.97□□□□□ -1.13
VPS13C-205ENST00000558088 KCNV2Q8TDN2 545 aa7.96□□□□□ -1.14
VPS13C-205ENST00000558088 C3orf80F5H4A9 247 aa7.95□□□□□ -1.14
VPS13C-205ENST00000558088 TTC13Q8NBP0 860 aa7.95□□□□□ -1.14
VPS13C-205ENST00000558088 MTRQ99707 1265 aa7.95□□□□□ -1.14
VPS13C-205ENST00000558088 NPDC1Q9NQX5 325 aaPredicted RBP7.95□□□□□ -1.14
VPS13C-205ENST00000558088 MLLT3P42568 568 aaPredicted RBP7.94□□□□□ -1.14
VPS13C-205ENST00000558088 TJAP1Q5JTD0 557 aa7.94□□□□□ -1.14
VPS13C-205ENST00000558088 PRR14Q9BWN1 585 aa7.94□□□□□ -1.14
VPS13C-205ENST00000558088 SWT1Q5T5J6 900 aaKnown RBP7.93□□□□□ -1.14
VPS13C-205ENST00000558088 NUTM2FA1L443 756 aa7.92□□□□□ -1.14
VPS13C-205ENST00000558088 APLP1P51693 650 aa7.91□□□□□ -1.14
VPS13C-205ENST00000558088 RBM46Q8TBY0 533 aaKnown RBP7.91□□□□□ -1.14
VPS13C-205ENST00000558088 GGCXP38435 758 aa7.9□□□□□ -1.14
VPS13C-205ENST00000558088 PTGDRQ13258 359 aa7.9□□□□□ -1.14
VPS13C-205ENST00000558088 LAPTM4AQ15012 233 aa7.9□□□□□ -1.14
VPS13C-205ENST00000558088 DNAJB2P25686 324 aa7.89□□□□□ -1.15
VPS13C-205ENST00000558088 Q6ZNB5 142 aa7.89□□□□□ -1.15
VPS13C-205ENST00000558088 EYA1Q99502 592 aa7.89□□□□□ -1.15
VPS13C-205ENST00000558088 FCHSD2O94868 740 aa7.87□□□□□ -1.15
VPS13C-205ENST00000558088 COPS2P61201 443 aa7.87□□□□□ -1.15
VPS13C-205ENST00000558088 PPP1R18Q6NYC8 613 aa7.87□□□□□ -1.15
VPS13C-205ENST00000558088 ZNF516Q92618 1163 aa7.87□□□□□ -1.15
VPS13C-205ENST00000558088 PRKD2Q9BZL6 878 aa7.87□□□□□ -1.15
VPS13C-205ENST00000558088 EIF4ENIF1Q9NRA8 985 aaKnown RBP7.86□□□□□ -1.15
VPS13C-205ENST00000558088 PCDHB3Q9Y5E6 796 aa7.86□□□□□ -1.15
VPS13C-205ENST00000558088 ADGRG1Q9Y653 693 aa7.85□□□□□ -1.15
VPS13C-205ENST00000558088 KMT5BQ4FZB7 885 aa7.84□□□□□ -1.15
VPS13C-205ENST00000558088 SMYD5Q6GMV2 418 aa7.84□□□□□ -1.15
VPS13C-205ENST00000558088 TMEM134Q9H6X4 195 aa7.84□□□□□ -1.15
Retrieved 100 of 20,778 RNA–protein pairs in 16.4 ms