RNA–Protein interactions for RNA: ENST00000557076.5

SCFD1-223, Transcript of sec1 family domain containing 1, humanhuman

TSL 3

Gene SCFD1, Length 743 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCFD1-223ENST00000557076 WDR62O43379 1518 aa9.35□□□□□ -0.91
SCFD1-223ENST00000557076 ANO8Q9HCE9 1232 aaPredicted RBP9.34□□□□□ -0.91
SCFD1-223ENST00000557076 BAZ1AQ9NRL2 1556 aaPredicted RBP9.33□□□□□ -0.92
SCFD1-223ENST00000557076 EVI5O60447 810 aa9.33□□□□□ -0.92
SCFD1-223ENST00000557076 FOSBP53539 338 aa9.33□□□□□ -0.92
SCFD1-223ENST00000557076 JPH4Q96JJ6 628 aa9.33□□□□□ -0.92
SCFD1-223ENST00000557076 KIF21AQ7Z4S6 1674 aa9.32□□□□□ -0.92
SCFD1-223ENST00000557076 SLC4A5Q9BY07 1137 aa9.32□□□□□ -0.92
SCFD1-223ENST00000557076 PTPREP23469 700 aa9.31□□□□□ -0.92
SCFD1-223ENST00000557076 MAP3K9P80192 1104 aa9.31□□□□□ -0.92
SCFD1-223ENST00000557076 VPS9D1Q9Y2B5 631 aa9.31□□□□□ -0.92
SCFD1-223ENST00000557076 ZDHHC16Q969W1 377 aa9.29□□□□□ -0.92
SCFD1-223ENST00000557076 PLA2G2EQ9NZK7 142 aa9.28□□□□□ -0.92
SCFD1-223ENST00000557076 KCTD12Q96CX2 325 aaKnown RBP9.27□□□□□ -0.93
SCFD1-223ENST00000557076 CEP164Q9UPV0 1460 aa9.26□□□□□ -0.93
SCFD1-223ENST00000557076 RIMBP3CA6NJZ7 1639 aa9.25□□□□□ -0.93
SCFD1-223ENST00000557076 RIMBP3BA6NNM3 1639 aa9.25□□□□□ -0.93
SCFD1-223ENST00000557076 RIMBP3Q9UFD9 1639 aa9.25□□□□□ -0.93
SCFD1-223ENST00000557076 EMILIN3Q9NT22 766 aa9.25□□□□□ -0.93
SCFD1-223ENST00000557076 FANCD2Q9BXW9 1451 aa9.25□□□□□ -0.93
SCFD1-223ENST00000557076 CADPS2Q86UW7 1296 aa9.24□□□□□ -0.93
SCFD1-223ENST00000557076 ZBED2Q9BTP6 218 aa9.24□□□□□ -0.93
SCFD1-223ENST00000557076 ADAM33Q9BZ11 813 aa9.24□□□□□ -0.93
SCFD1-223ENST00000557076 ARHGEF11O15085 1522 aa9.24□□□□□ -0.93
SCFD1-223ENST00000557076 MROH2BQ7Z745 1585 aa9.24□□□□□ -0.93
SCFD1-223ENST00000557076 BHMG1C9JSJ3 638 aaPredicted RBP9.23□□□□□ -0.93
SCFD1-223ENST00000557076 BBXQ8WY36 941 aaPredicted RBP9.22□□□□□ -0.93
SCFD1-223ENST00000557076 NBPF3Q9H094 633 aa9.22□□□□□ -0.93
SCFD1-223ENST00000557076 FBXW7Q969H0 707 aa9.21□□□□□ -0.94
SCFD1-223ENST00000557076 GOLGA8CPA6NN73 597 aa9.2□□□□□ -0.94
SCFD1-223ENST00000557076 PPP1R3GB7ZBB8 358 aa9.2□□□□□ -0.94
SCFD1-223ENST00000557076 CAMK2BQ13554 666 aa9.2□□□□□ -0.94
SCFD1-223ENST00000557076 TYW1BQ6NUM6 668 aa9.2□□□□□ -0.94
SCFD1-223ENST00000557076 MRPL50Q8N5N7 158 aaKnown RBP9.2□□□□□ -0.94
SCFD1-223ENST00000557076 PCDHGA10Q9Y5H3 936 aa9.2□□□□□ -0.94
SCFD1-223ENST00000557076 CFTRP13569 1480 aa9.2□□□□□ -0.94
SCFD1-223ENST00000557076 PHF14O94880 888 aa9.19□□□□□ -0.94
SCFD1-223ENST00000557076 URB2Q14146 1524 aaKnown RBP9.17□□□□□ -0.94
SCFD1-223ENST00000557076 PTPN5P54829 565 aa9.17□□□□□ -0.94
SCFD1-223ENST00000557076 THSD4Q6ZMP0 1018 aa9.17□□□□□ -0.94
SCFD1-223ENST00000557076 WNT2BQ93097 391 aa9.17□□□□□ -0.94
SCFD1-223ENST00000557076 EPAS1Q99814 870 aa9.16□□□□□ -0.94
SCFD1-223ENST00000557076 RABGEF1Q9UJ41 708 aa9.15□□□□□ -0.94
SCFD1-223ENST00000557076 DPYSL4O14531 572 aa9.14□□□□□ -0.95
SCFD1-223ENST00000557076 IFT140Q96RY7 1462 aa9.14□□□□□ -0.95
SCFD1-223ENST00000557076 AMER1Q5JTC6 1135 aaPredicted RBP9.13□□□□□ -0.95
SCFD1-223ENST00000557076 ZBTB4Q9P1Z0 1013 aaPredicted RBP9.13□□□□□ -0.95
SCFD1-223ENST00000557076 ZNF608Q9ULD9 1512 aaPredicted RBP9.13□□□□□ -0.95
SCFD1-223ENST00000557076 ARAP1Q96P48 1450 aa9.13□□□□□ -0.95
SCFD1-223ENST00000557076 SPRYD3Q8NCJ5 442 aa9.12□□□□□ -0.95
SCFD1-223ENST00000557076 RSF1Q96T23 1441 aaPredicted RBP9.12□□□□□ -0.95
SCFD1-223ENST00000557076 ONECUT3O60422 494 aaPredicted RBP9.11□□□□□ -0.95
SCFD1-223ENST00000557076 COL9A1P20849 921 aa9.11□□□□□ -0.95
SCFD1-223ENST00000557076 IFFO2Q5TF58 517 aa9.11□□□□□ -0.95
SCFD1-223ENST00000557076 PROX2Q3B8N5 592 aa9.1□□□□□ -0.95
SCFD1-223ENST00000557076 LAPTM4BQ86VI4 370 aa9.1□□□□□ -0.95
SCFD1-223ENST00000557076 C6orf132Q5T0Z8 1188 aa9.09□□□□□ -0.95
SCFD1-223ENST00000557076 ANKK1Q8NFD2 765 aa9.09□□□□□ -0.95
SCFD1-223ENST00000557076 SPDYE16A6NNV3 312 aaPredicted RBP9.06□□□□□ -0.96
SCFD1-223ENST00000557076 PDIA6Q15084 440 aa9.06□□□□□ -0.96
SCFD1-223ENST00000557076 DDX12PQ92771 950 aa9.06□□□□□ -0.96
SCFD1-223ENST00000557076 AQRO60306 1485 aaKnown RBP eCLIP9.05□□□□□ -0.962e-7■□□□□ 8.7
SCFD1-223ENST00000557076 RGS20O76081 388 aa9.05□□□□□ -0.96
SCFD1-223ENST00000557076 KIAA1468Q9P260 1216 aa9.05□□□□□ -0.96
SCFD1-223ENST00000557076 TRIM6-TRIM34B2RNG4 842 aa9.04□□□□□ -0.96
SCFD1-223ENST00000557076 RBM33Q96EV2 1170 aaKnown RBP9.04□□□□□ -0.96
SCFD1-223ENST00000557076 WIZO95785 1651 aa9.04□□□□□ -0.96
SCFD1-223ENST00000557076 SOWAHBA6NEL2 793 aa9.03□□□□□ -0.96
SCFD1-223ENST00000557076 EN1Q05925 392 aaPredicted RBP9.03□□□□□ -0.96
SCFD1-223ENST00000557076 NBR1Q14596 966 aa9.03□□□□□ -0.96
SCFD1-223ENST00000557076 E2F4Q16254 413 aa9.03□□□□□ -0.96
SCFD1-223ENST00000557076 NYAP1Q6ZVC0 841 aa9.03□□□□□ -0.96
SCFD1-223ENST00000557076 ZFRQ96KR1 1074 aaKnown RBP9.03□□□□□ -0.96
SCFD1-223ENST00000557076 ABCC8Q09428 1581 aa9.03□□□□□ -0.96
SCFD1-223ENST00000557076 CHMP7Q8WUX9 453 aaPredicted RBP9.02□□□□□ -0.97
SCFD1-223ENST00000557076 WDR70Q9NW82 654 aa9.02□□□□□ -0.97
SCFD1-223ENST00000557076 TOPBP1Q92547 1522 aa9.01□□□□□ -0.97
SCFD1-223ENST00000557076 MAP3K7O43318 606 aa9.01□□□□□ -0.97
SCFD1-223ENST00000557076 FAM98CQ17RN3 349 aaKnown RBP9.01□□□□□ -0.97
SCFD1-223ENST00000557076 ARIH1Q9Y4X5 557 aaPredicted RBP9.01□□□□□ -0.97
SCFD1-223ENST00000557076 A0A0G2JS52 829 aa9□□□□□ -0.97
SCFD1-223ENST00000557076 BCAMP50895 628 aa9□□□□□ -0.97
SCFD1-223ENST00000557076 CFAP44Q96MT7 982 aa9□□□□□ -0.97
SCFD1-223ENST00000557076 PAXIP1Q6ZW49 1069 aaPredicted RBP8.99□□□□□ -0.97
SCFD1-223ENST00000557076 RTN4Q9NQC3 1192 aaKnown RBP8.99□□□□□ -0.97
SCFD1-223ENST00000557076 SEPT9Q9UHD8 586 aaPredicted RBP8.99□□□□□ -0.97
SCFD1-223ENST00000557076 ITGBL1O95965 494 aaPredicted RBP8.98□□□□□ -0.97
SCFD1-223ENST00000557076 PACS2Q86VP3 889 aa8.98□□□□□ -0.97
SCFD1-223ENST00000557076 CERKQ8TCT0 537 aa8.98□□□□□ -0.97
SCFD1-223ENST00000557076 TSR1Q2NL82 804 aaKnown RBP8.97□□□□□ -0.97
SCFD1-223ENST00000557076 LRCH3Q96II8 777 aa8.96□□□□□ -0.98
SCFD1-223ENST00000557076 CDKN2AIPQ9NXV6 580 aaPredicted RBP8.96□□□□□ -0.98
SCFD1-223ENST00000557076 TDRD9Q8NDG6 1382 aaKnown RBP8.96□□□□□ -0.98
SCFD1-223ENST00000557076 TSKSQ9UJT2 592 aa8.95□□□□□ -0.98
SCFD1-223ENST00000557076 EIF4G3O43432 1585 aaKnown RBP8.95□□□□□ -0.98
SCFD1-223ENST00000557076 WBP1LQ9NX94 342 aa8.94□□□□□ -0.98
SCFD1-223ENST00000557076 TSR3Q9UJK0 312 aaKnown RBP8.94□□□□□ -0.98
SCFD1-223ENST00000557076 SOGA1O94964 1423 aa8.93□□□□□ -0.98
SCFD1-223ENST00000557076 TOP2AP11388 1531 aaKnown RBP8.93□□□□□ -0.98
SCFD1-223ENST00000557076 CCDC88BA6NC98 1476 aa8.92□□□□□ -0.98
Retrieved 100 of 20,778 RNA–protein pairs in 41.7 ms