RNA–Protein interactions for RNA: ENST00000556726.5

CCDC88C-211, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 5

Gene CCDC88C, Length 3,617 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-211ENST00000556726 CAMSAP2Q08AD1 1489 aa15.93■□□□□ 0.14
CCDC88C-211ENST00000556726 NPM1P06748 294 aaKnown RBP eCLIP15.93■□□□□ 0.14
CCDC88C-211ENST00000556726 ADAMTS8Q9UP79 889 aa15.92■□□□□ 0.14
CCDC88C-211ENST00000556726 NUP153P49790 1475 aaKnown RBP15.92■□□□□ 0.14
CCDC88C-211ENST00000556726 PPM1GO15355 546 aaPredicted RBP15.91■□□□□ 0.14
CCDC88C-211ENST00000556726 GOLGA6L2Q8N9W4 650 aaPredicted RBP15.91■□□□□ 0.14
CCDC88C-211ENST00000556726 SPAG9O60271 1321 aaKnown RBP15.91■□□□□ 0.14
CCDC88C-211ENST00000556726 IPO9Q96P70 1041 aaKnown RBP15.9■□□□□ 0.14
CCDC88C-211ENST00000556726 STK26Q9P289 416 aa15.9■□□□□ 0.14
CCDC88C-211ENST00000556726 TRAK1Q9UPV9 953 aa15.9■□□□□ 0.14
CCDC88C-211ENST00000556726 ROCK1Q13464 1354 aa15.9■□□□□ 0.14
CCDC88C-211ENST00000556726 BCL2L13Q9BXK5 485 aa15.89■□□□□ 0.13
CCDC88C-211ENST00000556726 IFT140Q96RY7 1462 aa15.89■□□□□ 0.13
CCDC88C-211ENST00000556726 PDE4AP27815 886 aa15.88■□□□□ 0.13
CCDC88C-211ENST00000556726 STAG3Q9UJ98 1225 aa15.88■□□□□ 0.13
CCDC88C-211ENST00000556726 APAF1O14727 1248 aa15.88■□□□□ 0.13
CCDC88C-211ENST00000556726 GRIN2AQ12879 1464 aa15.88■□□□□ 0.13
CCDC88C-211ENST00000556726 KIF21AQ7Z4S6 1674 aa15.87■□□□□ 0.13
CCDC88C-211ENST00000556726 CLUAP1Q96AJ1 413 aa15.87■□□□□ 0.13
CCDC88C-211ENST00000556726 GPATCH8Q9UKJ3 1502 aaKnown RBP15.86■□□□□ 0.13
CCDC88C-211ENST00000556726 CDCA8Q53HL2 280 aa15.85■□□□□ 0.13
CCDC88C-211ENST00000556726 U2SURPO15042 1029 aaKnown RBP15.85■□□□□ 0.13
CCDC88C-211ENST00000556726 C20orf194Q5TEA3 1177 aa15.84■□□□□ 0.13
CCDC88C-211ENST00000556726 GOLGA2Q08379 1002 aa15.83■□□□□ 0.13
CCDC88C-211ENST00000556726 CFAP70Q5T0N1 1121 aa15.83■□□□□ 0.13
CCDC88C-211ENST00000556726 MORC1Q86VD1 984 aa15.83■□□□□ 0.12
CCDC88C-211ENST00000556726 SPRYD3Q8NCJ5 442 aa15.82■□□□□ 0.12
CCDC88C-211ENST00000556726 SAMD9Q5K651 1589 aa15.81■□□□□ 0.12
CCDC88C-211ENST00000556726 TMEM132EQ6IEE7 984 aa15.81■□□□□ 0.12
CCDC88C-211ENST00000556726 ABCA5Q8WWZ7 1642 aa15.81■□□□□ 0.12
CCDC88C-211ENST00000556726 RSPH4AQ5TD94 716 aa15.81■□□□□ 0.12
CCDC88C-211ENST00000556726 TCOF1Q13428 1488 aaKnown RBP15.81■□□□□ 0.12
CCDC88C-211ENST00000556726 WDR62O43379 1518 aa15.81■□□□□ 0.12
CCDC88C-211ENST00000556726 TCERG1O14776 1098 aaKnown RBP15.81■□□□□ 0.12
CCDC88C-211ENST00000556726 SLC24A1O60721 1099 aa15.8■□□□□ 0.12
CCDC88C-211ENST00000556726 SMG6Q86US8 1419 aaKnown RBP15.8■□□□□ 0.12
CCDC88C-211ENST00000556726 DENND4BO75064 1496 aaPredicted RBP15.8■□□□□ 0.12
CCDC88C-211ENST00000556726 BRD4O60885 1362 aaPredicted RBP15.8■□□□□ 0.12
CCDC88C-211ENST00000556726 ARHGAP5Q13017 1502 aa15.79■□□□□ 0.12
CCDC88C-211ENST00000556726 PZPP20742 1482 aa15.79■□□□□ 0.12
CCDC88C-211ENST00000556726 DHX29Q7Z478 1369 aaKnown RBP15.79■□□□□ 0.12
CCDC88C-211ENST00000556726 DISP1Q96F81 1524 aa15.79■□□□□ 0.12
CCDC88C-211ENST00000556726 MAGI1Q96QZ7 1491 aaPredicted RBP15.79■□□□□ 0.12
CCDC88C-211ENST00000556726 PDE3BQ13370 1112 aa15.77■□□□□ 0.12
CCDC88C-211ENST00000556726 PPP2R1AP30153 589 aa15.76■□□□□ 0.11
CCDC88C-211ENST00000556726 COG6Q9Y2V7 657 aa15.76■□□□□ 0.11
CCDC88C-211ENST00000556726 TEX14Q8IWB6 1497 aa15.76■□□□□ 0.11
CCDC88C-211ENST00000556726 U2AF1L5P0DN76 240 aaPredicted RBP15.76■□□□□ 0.11
CCDC88C-211ENST00000556726 SRPK2P78362 688 aaKnown RBP15.76■□□□□ 0.11
CCDC88C-211ENST00000556726 U2AF1Q01081 240 aaKnown RBP eCLIP15.76■□□□□ 0.11
CCDC88C-211ENST00000556726 DISP3Q9P2K9 1392 aa15.76■□□□□ 0.11
CCDC88C-211ENST00000556726 SYNJ2O15056 1496 aa15.76■□□□□ 0.11
CCDC88C-211ENST00000556726 PLEKHG5O94827 1062 aa15.76■□□□□ 0.11
CCDC88C-211ENST00000556726 MLECQ14165 292 aa15.76■□□□□ 0.11
CCDC88C-211ENST00000556726 ADAMTS12P58397 1594 aa15.75■□□□□ 0.11
CCDC88C-211ENST00000556726 ARID4BQ4LE39 1312 aaPredicted RBP15.75■□□□□ 0.11
CCDC88C-211ENST00000556726 BCAR3O75815 825 aa15.75■□□□□ 0.11
CCDC88C-211ENST00000556726 ATP10BO94823 1461 aa15.75■□□□□ 0.11
CCDC88C-211ENST00000556726 KANK1Q14678 1352 aa15.74■□□□□ 0.11
CCDC88C-211ENST00000556726 SLKQ9H2G2 1235 aaPredicted RBP15.74■□□□□ 0.11
CCDC88C-211ENST00000556726 RAPGEF6Q8TEU7 1601 aa15.73■□□□□ 0.11
CCDC88C-211ENST00000556726 FTSJ3Q8IY81 847 aaKnown RBP15.73■□□□□ 0.11
CCDC88C-211ENST00000556726 PLEKHH2Q8IVE3 1493 aa15.72■□□□□ 0.11
CCDC88C-211ENST00000556726 PANK1Q8TE04 598 aa15.72■□□□□ 0.11
CCDC88C-211ENST00000556726 POGKQ9P215 609 aa15.72■□□□□ 0.11
CCDC88C-211ENST00000556726 KIAA0556O60303 1618 aa15.71■□□□□ 0.11
CCDC88C-211ENST00000556726 DDRGK1Q96HY6 314 aa15.71■□□□□ 0.11
CCDC88C-211ENST00000556726 CFAP53Q96M91 514 aa15.71■□□□□ 0.11
CCDC88C-211ENST00000556726 SOX12O15370 315 aa15.71■□□□□ 0.11
CCDC88C-211ENST00000556726 EIF5BO60841 1220 aaKnown RBP15.71■□□□□ 0.11
CCDC88C-211ENST00000556726 UPF2Q9HAU5 1272 aaKnown RBP15.7■□□□□ 0.1
CCDC88C-211ENST00000556726 KIF14Q15058 1648 aa15.7■□□□□ 0.1
CCDC88C-211ENST00000556726 SLC12A5Q9H2X9 1139 aa15.7■□□□□ 0.1
CCDC88C-211ENST00000556726 SPATA31E1Q6ZUB1 1445 aa15.7■□□□□ 0.1
CCDC88C-211ENST00000556726 TARBP1Q13395 1621 aaKnown RBP15.7■□□□□ 0.1
CCDC88C-211ENST00000556726 ERBINQ96RT1 1412 aa15.68■□□□□ 0.1
CCDC88C-211ENST00000556726 LRRIQ1Q96JM4 1722 aa15.68■□□□□ 0.1
CCDC88C-211ENST00000556726 WASHC2CQ9Y4E1 1318 aa15.68■□□□□ 0.1
CCDC88C-211ENST00000556726 KDM5BQ9UGL1 1544 aa15.68■□□□□ 0.1
CCDC88C-211ENST00000556726 CENPJQ9HC77 1338 aaPredicted RBP15.66■□□□□ 0.1
CCDC88C-211ENST00000556726 TESK2Q96S53 571 aa15.66■□□□□ 0.1
CCDC88C-211ENST00000556726 CCDC141Q6ZP82 1450 aa15.65■□□□□ 0.1
CCDC88C-211ENST00000556726 PBRM1Q86U86 1689 aa15.65■□□□□ 0.1
CCDC88C-211ENST00000556726 SCAPERQ9BY12 1400 aa15.65■□□□□ 0.1
CCDC88C-211ENST00000556726 BACH2Q9BYV9 841 aa15.65■□□□□ 0.1
CCDC88C-211ENST00000556726 DNMT1P26358 1616 aaKnown RBP15.64■□□□□ 0.09
CCDC88C-211ENST00000556726 MAPK8IP3Q9UPT6 1336 aa15.64■□□□□ 0.09
CCDC88C-211ENST00000556726 PER1O15534 1290 aaPredicted RBP15.64■□□□□ 0.09
CCDC88C-211ENST00000556726 ELL2O00472 640 aaPredicted RBP15.64■□□□□ 0.09
CCDC88C-211ENST00000556726 SUGP2Q8IX01 1082 aaKnown RBP eCLIP15.63■□□□□ 0.09
CCDC88C-211ENST00000556726 CABP2Q9NPB3 220 aa15.63■□□□□ 0.09
CCDC88C-211ENST00000556726 HSP90AA1P07900 732 aaKnown RBP15.63■□□□□ 0.09
CCDC88C-211ENST00000556726 NUTM2FA1L443 756 aa15.63■□□□□ 0.09
CCDC88C-211ENST00000556726 MINK1Q8N4C8 1332 aaPredicted RBP15.63■□□□□ 0.09
CCDC88C-211ENST00000556726 ADGRF5Q8IZF2 1346 aa15.62■□□□□ 0.09
CCDC88C-211ENST00000556726 MTHFSP49914 203 aa15.61■□□□□ 0.09
CCDC88C-211ENST00000556726 CENPQQ7L2Z9 268 aaPredicted RBP15.61■□□□□ 0.09
CCDC88C-211ENST00000556726 GGNBP2Q9H3C7 697 aa15.61■□□□□ 0.09
CCDC88C-211ENST00000556726 EIF4G3O43432 1585 aaKnown RBP15.61■□□□□ 0.09
CCDC88C-211ENST00000556726 ESF1Q9H501 851 aaKnown RBP15.61■□□□□ 0.09
Retrieved 100 of 20,778 RNA–protein pairs in 29.9 ms