RNA–Protein interactions for RNA: ENST00000556353.1

PRPF39-209, Transcript of pre-mRNA processing factor 39, humanhuman

TSL 2

Gene PRPF39, Length 687 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRPF39-209ENST00000556353 NBR1Q14596 966 aa13.69□□□□□ -0.22
PRPF39-209ENST00000556353 RNF166Q96A37 237 aaPredicted RBP13.69□□□□□ -0.22
PRPF39-209ENST00000556353 P3H3Q8IVL6 736 aa13.68□□□□□ -0.22
PRPF39-209ENST00000556353 SLC4A5Q9BY07 1137 aa13.67□□□□□ -0.22
PRPF39-209ENST00000556353 PPP1R3GB7ZBB8 358 aa13.66□□□□□ -0.22
PRPF39-209ENST00000556353 RBM33Q96EV2 1170 aaKnown RBP13.66□□□□□ -0.22
PRPF39-209ENST00000556353 VPS9D1Q9Y2B5 631 aa13.66□□□□□ -0.22
PRPF39-209ENST00000556353 GRXCR2A6NFK2 248 aa13.65□□□□□ -0.22
PRPF39-209ENST00000556353 ZBED2Q9BTP6 218 aa13.65□□□□□ -0.22
PRPF39-209ENST00000556353 HRO43593 1189 aa13.64□□□□□ -0.23
PRPF39-209ENST00000556353 C6orf132Q5T0Z8 1188 aa13.64□□□□□ -0.23
PRPF39-209ENST00000556353 STAC3Q96MF2 364 aa13.64□□□□□ -0.23
PRPF39-209ENST00000556353 MAP3K7O43318 606 aa13.62□□□□□ -0.23
PRPF39-209ENST00000556353 EN1Q05925 392 aaPredicted RBP13.62□□□□□ -0.23
PRPF39-209ENST00000556353 COL9A1P20849 921 aa13.61□□□□□ -0.23
PRPF39-209ENST00000556353 TSR1Q2NL82 804 aaKnown RBP13.56□□□□□ -0.24
PRPF39-209ENST00000556353 OSBPP22059 807 aa13.55□□□□□ -0.24
PRPF39-209ENST00000556353 PROX2Q3B8N5 592 aa13.55□□□□□ -0.24
PRPF39-209ENST00000556353 KDM2AQ9Y2K7 1162 aa13.55□□□□□ -0.24
PRPF39-209ENST00000556353 NBPF3Q9H094 633 aa13.54□□□□□ -0.24
PRPF39-209ENST00000556353 BHMG1C9JSJ3 638 aaPredicted RBP13.53□□□□□ -0.24
PRPF39-209ENST00000556353 PRIM1P49642 420 aaKnown RBP13.53□□□□□ -0.24
PRPF39-209ENST00000556353 VSIG10Q8N0Z9 540 aa13.53□□□□□ -0.24
PRPF39-209ENST00000556353 RABGEF1Q9UJ41 708 aa13.52□□□□□ -0.25
PRPF39-209ENST00000556353 MRPL50Q8N5N7 158 aaKnown RBP13.51□□□□□ -0.25
PRPF39-209ENST00000556353 MLLT3P42568 568 aaPredicted RBP13.5□□□□□ -0.25
PRPF39-209ENST00000556353 ONECUT3O60422 494 aaPredicted RBP13.49□□□□□ -0.25
PRPF39-209ENST00000556353 GOLGA8CPA6NN73 597 aa13.48□□□□□ -0.25
PRPF39-209ENST00000556353 CERKQ8TCT0 537 aa13.48□□□□□ -0.25
PRPF39-209ENST00000556353 KCTD12Q96CX2 325 aaKnown RBP13.48□□□□□ -0.25
PRPF39-209ENST00000556353 TRIM6-TRIM34B2RNG4 842 aa13.47□□□□□ -0.25
PRPF39-209ENST00000556353 KIAA1468Q9P260 1216 aa13.47□□□□□ -0.25
PRPF39-209ENST00000556353 SEMA3EO15041 775 aa13.45□□□□□ -0.26
PRPF39-209ENST00000556353 CDHR5Q9HBB8 845 aa13.45□□□□□ -0.26
PRPF39-209ENST00000556353 HCSTQ9UBK5 93 aa13.44□□□□□ -0.26
PRPF39-209ENST00000556353 PRSS12P56730 875 aa13.42□□□□□ -0.26
PRPF39-209ENST00000556353 LAPTM4BQ86VI4 370 aa13.42□□□□□ -0.26
PRPF39-209ENST00000556353 PACS2Q86VP3 889 aa13.42□□□□□ -0.26
PRPF39-209ENST00000556353 CDCA7LQ96GN5 454 aa13.42□□□□□ -0.26
PRPF39-209ENST00000556353 WNT2BQ93097 391 aa13.41□□□□□ -0.26
PRPF39-209ENST00000556353 TSKSQ9UJT2 592 aa13.4□□□□□ -0.26
PRPF39-209ENST00000556353 SEPT9Q9UHD8 586 aaPredicted RBP13.39□□□□□ -0.27
PRPF39-209ENST00000556353 TESPA1A2RU30 521 aaPredicted RBP13.37□□□□□ -0.27
PRPF39-209ENST00000556353 SMYD5Q6GMV2 418 aa13.36□□□□□ -0.27
PRPF39-209ENST00000556353 THSD4Q6ZMP0 1018 aa13.36□□□□□ -0.27
PRPF39-209ENST00000556353 ANKK1Q8NFD2 765 aa13.36□□□□□ -0.27
PRPF39-209ENST00000556353 NPDC1Q9NQX5 325 aaPredicted RBP13.36□□□□□ -0.27
PRPF39-209ENST00000556353 RBM27Q9P2N5 1060 aaKnown RBP13.36□□□□□ -0.27
PRPF39-209ENST00000556353 PTPN5P54829 565 aa13.35□□□□□ -0.27
PRPF39-209ENST00000556353 FAM98CQ17RN3 349 aaKnown RBP13.35□□□□□ -0.27
PRPF39-209ENST00000556353 ZFRQ96KR1 1074 aaKnown RBP13.34□□□□□ -0.27
PRPF39-209ENST00000556353 FAM198AQ9UFP1 575 aa13.34□□□□□ -0.27
PRPF39-209ENST00000556353 NUTM2FA1L443 756 aa13.33□□□□□ -0.28
PRPF39-209ENST00000556353 NBPF26B4DH59 902 aa13.32□□□□□ -0.28
PRPF39-209ENST00000556353 PTGDRQ13258 359 aa13.3□□□□□ -0.28
PRPF39-209ENST00000556353 PADI6Q6TGC4 694 aa13.3□□□□□ -0.28
PRPF39-209ENST00000556353 TATDN2Q93075 761 aa13.3□□□□□ -0.28
PRPF39-209ENST00000556353 PNMA3Q9UL41 463 aa13.3□□□□□ -0.28
PRPF39-209ENST00000556353 SMAPO00193 183 aa13.28□□□□□ -0.28
PRPF39-209ENST00000556353 TTC13Q8NBP0 860 aa13.28□□□□□ -0.28
PRPF39-209ENST00000556353 SOWAHBA6NEL2 793 aa13.27□□□□□ -0.29
PRPF39-209ENST00000556353 BCAMP50895 628 aa13.27□□□□□ -0.29
PRPF39-209ENST00000556353 C3orf80F5H4A9 247 aa13.26□□□□□ -0.29
PRPF39-209ENST00000556353 RBM26Q5T8P6 1007 aaKnown RBP13.26□□□□□ -0.29
PRPF39-209ENST00000556353 NUDT18Q6ZVK8 323 aa13.26□□□□□ -0.29
PRPF39-209ENST00000556353 FCHSD2O94868 740 aa13.25□□□□□ -0.29
PRPF39-209ENST00000556353 LRCH3Q96II8 777 aa13.24□□□□□ -0.29
PRPF39-209ENST00000556353 CDKN2AIPQ9NXV6 580 aaPredicted RBP13.24□□□□□ -0.29
PRPF39-209ENST00000556353 PLA2G2EQ9NZK7 142 aa13.2□□□□□ -0.3
PRPF39-209ENST00000556353 TULP1O00294 542 aaPredicted RBP13.19□□□□□ -0.3
PRPF39-209ENST00000556353 HDGFP51858 240 aaKnown RBP13.19□□□□□ -0.3
PRPF39-209ENST00000556353 SAMD7Q7Z3H4 446 aa13.19□□□□□ -0.3
PRPF39-209ENST00000556353 HIC1Q14526 733 aa13.18□□□□□ -0.3
PRPF39-209ENST00000556353 TSR3Q9UJK0 312 aaKnown RBP13.17□□□□□ -0.3
PRPF39-209ENST00000556353 HPS5Q9UPZ3 1129 aa13.17□□□□□ -0.3
PRPF39-209ENST00000556353 NYAP1Q6ZVC0 841 aa13.16□□□□□ -0.3
PRPF39-209ENST00000556353 WBP1LQ9NX94 342 aa13.16□□□□□ -0.3
PRPF39-209ENST00000556353 EYA1Q99502 592 aa13.15□□□□□ -0.3
PRPF39-209ENST00000556353 RBM46Q8TBY0 533 aaKnown RBP13.14□□□□□ -0.31
PRPF39-209ENST00000556353 ADGRG1Q9Y653 693 aa13.14□□□□□ -0.31
PRPF39-209ENST00000556353 PPP4CP60510 307 aa13.13□□□□□ -0.31
PRPF39-209ENST00000556353 GPIHBP1Q8IV16 184 aa13.13□□□□□ -0.31
PRPF39-209ENST00000556353 GNPATO15228 680 aa13.11□□□□□ -0.31
PRPF39-209ENST00000556353 RNF40O75150 1001 aa13.11□□□□□ -0.31
PRPF39-209ENST00000556353 GPR37O15354 613 aa13.1□□□□□ -0.31
PRPF39-209ENST00000556353 SWT1Q5T5J6 900 aaKnown RBP13.1□□□□□ -0.31
PRPF39-209ENST00000556353 FAM161AQ3B820 660 aa13.09□□□□□ -0.31
PRPF39-209ENST00000556353 DNAJB2P25686 324 aa13.08□□□□□ -0.32
PRPF39-209ENST00000556353 SLC4A3P48751 1232 aa13.08□□□□□ -0.32
PRPF39-209ENST00000556353 SLF2Q8IX21 1173 aa13.07□□□□□ -0.32
PRPF39-209ENST00000556353 OATP04181 439 aa13.06□□□□□ -0.32
PRPF39-209ENST00000556353 FECHP22830 423 aa13.06□□□□□ -0.32
PRPF39-209ENST00000556353 NECTIN2Q92692 538 aa13.06□□□□□ -0.32
PRPF39-209ENST00000556353 RCCD1A6NED2 376 aa13.04□□□□□ -0.32
PRPF39-209ENST00000556353 TMEM134Q9H6X4 195 aa13.04□□□□□ -0.32
PRPF39-209ENST00000556353 PXYLP1Q8TE99 480 aa13.03□□□□□ -0.32
PRPF39-209ENST00000556353 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP13.02□□□□□ -0.33
PRPF39-209ENST00000556353 IFFO2Q5TF58 517 aa13.02□□□□□ -0.33
PRPF39-209ENST00000556353 ITGBL1O95965 494 aaPredicted RBP13.01□□□□□ -0.33
PRPF39-209ENST00000556353 METTL3Q86U44 580 aaKnown RBP13.01□□□□□ -0.33
Retrieved 100 of 20,778 RNA–protein pairs in 83.3 ms