RNA–Protein interactions for RNA: ENST00000555774.5

SHMT2-222, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 1 (best)

Gene SHMT2, Length 2,311 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-222ENST00000555774 ARHGAP5Q13017 1502 aa18.37■□□□□ 0.53
SHMT2-222ENST00000555774 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP18.37■□□□□ 0.53
SHMT2-222ENST00000555774 TTC37Q6PGP7 1564 aa18.37■□□□□ 0.53
SHMT2-222ENST00000555774 CCDC144AA2RUR9 1427 aa18.36■□□□□ 0.53
SHMT2-222ENST00000555774 E9PCH4 1651 aa18.35■□□□□ 0.53
SHMT2-222ENST00000555774 LAMC1P11047 1609 aa18.34■□□□□ 0.53
SHMT2-222ENST00000555774 IQGAP3Q86VI3 1631 aa18.34■□□□□ 0.53
SHMT2-222ENST00000555774 PRAG1Q86YV5 1406 aa18.34■□□□□ 0.53
SHMT2-222ENST00000555774 TRPM1Q7Z4N2 1603 aa18.34■□□□□ 0.53
SHMT2-222ENST00000555774 IRX6P78412 446 aaPredicted RBP18.34■□□□□ 0.53
SHMT2-222ENST00000555774 MYO5CQ9NQX4 1742 aa18.34■□□□□ 0.53
SHMT2-222ENST00000555774 DCAF11Q8TEB1 546 aa18.33■□□□□ 0.53
SHMT2-222ENST00000555774 DUOX2Q9NRD8 1548 aa18.32■□□□□ 0.52
SHMT2-222ENST00000555774 GPRASP1Q5JY77 1395 aa18.32■□□□□ 0.52
SHMT2-222ENST00000555774 RALBP1Q15311 655 aa18.32■□□□□ 0.52
SHMT2-222ENST00000555774 POLR3GLQ9BT43 218 aa18.32■□□□□ 0.52
SHMT2-222ENST00000555774 ATP10AO60312 1499 aa18.31■□□□□ 0.52
SHMT2-222ENST00000555774 MAGI2Q86UL8 1455 aa18.31■□□□□ 0.52
SHMT2-222ENST00000555774 BRD4O60885 1362 aaPredicted RBP18.31■□□□□ 0.52
SHMT2-222ENST00000555774 ST20-MTHFSA0A0A6YYL1 179 aa18.31■□□□□ 0.52
SHMT2-222ENST00000555774 ERBINQ96RT1 1412 aa18.3■□□□□ 0.52
SHMT2-222ENST00000555774 NUDCQ9Y266 331 aa18.3■□□□□ 0.52
SHMT2-222ENST00000555774 PNISRQ8TF01 805 aaKnown RBP18.29■□□□□ 0.52
SHMT2-222ENST00000555774 KDM2AQ9Y2K7 1162 aa18.29■□□□□ 0.52
SHMT2-222ENST00000555774 EIF2AK4Q9P2K8 1649 aaKnown RBP18.29■□□□□ 0.52
SHMT2-222ENST00000555774 MYBBP1AQ9BQG0 1328 aaKnown RBP18.28■□□□□ 0.52
SHMT2-222ENST00000555774 PLA2R1Q13018 1463 aa18.28■□□□□ 0.52
SHMT2-222ENST00000555774 LRPPRCP42704 1394 aaKnown RBP18.28■□□□□ 0.52
SHMT2-222ENST00000555774 RNF123Q5XPI4 1314 aa18.27■□□□□ 0.52
SHMT2-222ENST00000555774 FANCIQ9NVI1 1328 aa18.27■□□□□ 0.52
SHMT2-222ENST00000555774 TMC1Q8TDI8 760 aa18.27■□□□□ 0.51
SHMT2-222ENST00000555774 UHRF1BP1LA0JNW5 1464 aa18.26■□□□□ 0.51
SHMT2-222ENST00000555774 A2MP01023 1474 aa18.26■□□□□ 0.51
SHMT2-222ENST00000555774 PLCH2O75038 1416 aa18.25■□□□□ 0.51
SHMT2-222ENST00000555774 PRDM15P57071 1507 aaPredicted RBP18.25■□□□□ 0.51
SHMT2-222ENST00000555774 COL17A1Q9UMD9 1497 aaPredicted RBP18.23■□□□□ 0.51
SHMT2-222ENST00000555774 ERCC6L2Q5T890 1561 aa18.22■□□□□ 0.51
SHMT2-222ENST00000555774 WASHC2CQ9Y4E1 1318 aa18.22■□□□□ 0.51
SHMT2-222ENST00000555774 ABCC1P33527 1531 aa18.22■□□□□ 0.51
SHMT2-222ENST00000555774 PARD3Q8TEW0 1356 aa18.21■□□□□ 0.51
SHMT2-222ENST00000555774 ZCCHC11Q5TAX3 1644 aaKnown RBP18.2■□□□□ 0.5
SHMT2-222ENST00000555774 ARAP3Q8WWN8 1544 aa18.2■□□□□ 0.5
SHMT2-222ENST00000555774 CLASP1Q7Z460 1538 aa18.2■□□□□ 0.5
SHMT2-222ENST00000555774 EFCAB2Q5VUJ9 269 aa18.19■□□□□ 0.5
SHMT2-222ENST00000555774 INSRP06213 1382 aa18.19■□□□□ 0.5
SHMT2-222ENST00000555774 ZMYM4Q5VZL5 1548 aa18.18■□□□□ 0.5
SHMT2-222ENST00000555774 NLRP13Q86W25 1043 aa18.18■□□□□ 0.5
SHMT2-222ENST00000555774 RNF17Q9BXT8 1623 aaKnown RBP18.17■□□□□ 0.5
SHMT2-222ENST00000555774 B4GALNT3Q6L9W6 998 aa18.17■□□□□ 0.5
SHMT2-222ENST00000555774 GRWD1Q9BQ67 446 aaKnown RBP eCLIP18.17■□□□□ 0.5
SHMT2-222ENST00000555774 RTEL1-TNFRSF6BF6WH68 1400 aa18.16■□□□□ 0.5
SHMT2-222ENST00000555774 CNGB1Q14028 1251 aaPredicted RBP18.15■□□□□ 0.5
SHMT2-222ENST00000555774 RGL3Q3MIN7 710 aa18.15■□□□□ 0.5
SHMT2-222ENST00000555774 NBPF1Q3BBV0 1214 aa18.14■□□□□ 0.49
SHMT2-222ENST00000555774 PER1O15534 1290 aaPredicted RBP18.14■□□□□ 0.49
SHMT2-222ENST00000555774 TESK2Q96S53 571 aa18.14■□□□□ 0.49
SHMT2-222ENST00000555774 PDE3BQ13370 1112 aa18.12■□□□□ 0.49
SHMT2-222ENST00000555774 STAC3Q96MF2 364 aa18.12■□□□□ 0.49
SHMT2-222ENST00000555774 TRAPPC8Q9Y2L5 1435 aa18.11■□□□□ 0.49
SHMT2-222ENST00000555774 TRPM2O94759 1503 aa18.11■□□□□ 0.49
SHMT2-222ENST00000555774 TMF1P82094 1093 aa18.11■□□□□ 0.49
SHMT2-222ENST00000555774 DISP3Q9P2K9 1392 aa18.1■□□□□ 0.49
SHMT2-222ENST00000555774 ZFYVE16Q7Z3T8 1539 aa18.1■□□□□ 0.49
SHMT2-222ENST00000555774 DEPDC5O75140 1603 aa18.09■□□□□ 0.49
SHMT2-222ENST00000555774 MSH5O43196 834 aa18.09■□□□□ 0.49
SHMT2-222ENST00000555774 MADDQ8WXG6 1647 aa18.08■□□□□ 0.49
SHMT2-222ENST00000555774 PTPRTO14522 1441 aa18.08■□□□□ 0.48
SHMT2-222ENST00000555774 SPAG9O60271 1321 aaKnown RBP18.07■□□□□ 0.48
SHMT2-222ENST00000555774 BLMP54132 1417 aaPredicted RBP18.06■□□□□ 0.48
SHMT2-222ENST00000555774 NEURL4Q96JN8 1562 aa18.06■□□□□ 0.48
SHMT2-222ENST00000555774 CCDC136Q96JN2 1154 aa18.06■□□□□ 0.48
SHMT2-222ENST00000555774 SCAPERQ9BY12 1400 aa18.06■□□□□ 0.48
SHMT2-222ENST00000555774 IQGAP1P46940 1657 aa18.05■□□□□ 0.48
SHMT2-222ENST00000555774 CEP152O94986 1710 aa18.05■□□□□ 0.48
SHMT2-222ENST00000555774 SPHKAPQ2M3C7 1700 aa18.05■□□□□ 0.48
SHMT2-222ENST00000555774 TET3O43151 1660 aa18.04■□□□□ 0.48
SHMT2-222ENST00000555774 VWDEQ8N2E2 1590 aa18.03■□□□□ 0.48
SHMT2-222ENST00000555774 RRP1P56182 461 aaKnown RBP18.03■□□□□ 0.48
SHMT2-222ENST00000555774 PANK3Q9H999 370 aa18.03■□□□□ 0.48
SHMT2-222ENST00000555774 INO80Q9ULG1 1556 aaPredicted RBP18.02■□□□□ 0.48
SHMT2-222ENST00000555774 ABCA9Q8IUA7 1624 aa18.02■□□□□ 0.48
SHMT2-222ENST00000555774 WDR7Q9Y4E6 1490 aa18.02■□□□□ 0.47
SHMT2-222ENST00000555774 SCAF11Q99590 1463 aaKnown RBP18.01■□□□□ 0.47
SHMT2-222ENST00000555774 CDCA8Q53HL2 280 aa18.01■□□□□ 0.47
SHMT2-222ENST00000555774 ERICH6Q7L0X2 663 aa18■□□□□ 0.47
SHMT2-222ENST00000555774 KANK1Q14678 1352 aa18■□□□□ 0.47
SHMT2-222ENST00000555774 ATP7AQ04656 1500 aa18■□□□□ 0.47
SHMT2-222ENST00000555774 CLTCL1P53675 1640 aa18■□□□□ 0.47
SHMT2-222ENST00000555774 RCAN3Q9UKA8 241 aa18■□□□□ 0.47
SHMT2-222ENST00000555774 SYNMO15061 1565 aa18■□□□□ 0.47
SHMT2-222ENST00000555774 KIAA1210Q9ULL0 1709 aa17.99■□□□□ 0.47
SHMT2-222ENST00000555774 CC2D1BQ5T0F9 858 aaKnown RBP17.98■□□□□ 0.47
SHMT2-222ENST00000555774 FANCAO15360 1455 aa17.97■□□□□ 0.47
SHMT2-222ENST00000555774 EIF3AQ14152 1382 aaKnown RBP17.97■□□□□ 0.47
SHMT2-222ENST00000555774 AFAP1Q8N556 730 aa17.95■□□□□ 0.46
SHMT2-222ENST00000555774 SLC24A1O60721 1099 aa17.94■□□□□ 0.46
SHMT2-222ENST00000555774 NPC1L1Q9UHC9 1359 aa17.94■□□□□ 0.46
SHMT2-222ENST00000555774 MYOM2P54296 1465 aa17.94■□□□□ 0.46
SHMT2-222ENST00000555774 KNSTRNQ9Y448 316 aa17.92■□□□□ 0.46
SHMT2-222ENST00000555774 SENP3-EIF4A1A0A087X0R7 540 aa17.92■□□□□ 0.46
Retrieved 100 of 20,778 RNA–protein pairs in 65.5 ms