RNA–Protein interactions for RNA: ENST00000554785.1

PRPF39-208, Transcript of pre-mRNA processing factor 39, humanhuman

TSL 2

Gene PRPF39, Length 2,121 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRPF39-208ENST00000554785 PSMG3-AS1Q96PY0 264 aa4.06□□□□□ -1.76
PRPF39-208ENST00000554785 BTBD11A6QL63 1104 aa4.05□□□□□ -1.76
PRPF39-208ENST00000554785 ZBTB4Q9P1Z0 1013 aaPredicted RBP4.03□□□□□ -1.76
PRPF39-208ENST00000554785 KCTD12Q96CX2 325 aaKnown RBP4.03□□□□□ -1.76
PRPF39-208ENST00000554785 GOLGA8CPA6NN73 597 aa4.02□□□□□ -1.77
PRPF39-208ENST00000554785 PSEN2P49810 448 aa4.02□□□□□ -1.77
PRPF39-208ENST00000554785 BCL2L12Q9HB09 334 aa4.02□□□□□ -1.77
PRPF39-208ENST00000554785 DMRTA1Q5VZB9 504 aa4.01□□□□□ -1.77
PRPF39-208ENST00000554785 NYAP1Q6ZVC0 841 aa4.01□□□□□ -1.77
PRPF39-208ENST00000554785 NBPF3Q9H094 633 aa4.01□□□□□ -1.77
PRPF39-208ENST00000554785 VPS9D1Q9Y2B5 631 aa4.01□□□□□ -1.77
PRPF39-208ENST00000554785 EVI5O60447 810 aa4.01□□□□□ -1.77
PRPF39-208ENST00000554785 PTPREP23469 700 aa4.01□□□□□ -1.77
PRPF39-208ENST00000554785 CAMK2BQ13554 666 aa4.01□□□□□ -1.77
PRPF39-208ENST00000554785 KRTAP17-1Q9BYP8 105 aa4.01□□□□□ -1.77
PRPF39-208ENST00000554785 MAP3K9P80192 1104 aa4□□□□□ -1.77
PRPF39-208ENST00000554785 TSHZ2Q9NRE2 1034 aa4□□□□□ -1.77
PRPF39-208ENST00000554785 KRTAP4-8A0A0G2JLE6 195 aa4□□□□□ -1.77
PRPF39-208ENST00000554785 DPYSL4O14531 572 aa4□□□□□ -1.77
PRPF39-208ENST00000554785 ZNF454Q8N9F8 522 aa4□□□□□ -1.77
PRPF39-208ENST00000554785 KCNK17Q96T54 332 aa4□□□□□ -1.77
PRPF39-208ENST00000554785 WIPF1O43516 503 aa3.99□□□□□ -1.77
PRPF39-208ENST00000554785 FOSBP53539 338 aa3.99□□□□□ -1.77
PRPF39-208ENST00000554785 THSD4Q6ZMP0 1018 aa3.99□□□□□ -1.77
PRPF39-208ENST00000554785 MRPL50Q8N5N7 158 aaKnown RBP3.99□□□□□ -1.77
PRPF39-208ENST00000554785 BHMG1C9JSJ3 638 aaPredicted RBP3.98□□□□□ -1.77
PRPF39-208ENST00000554785 LCE3BQ5TA77 95 aa3.98□□□□□ -1.77
PRPF39-208ENST00000554785 FAM181BA6NEQ2 426 aa3.98□□□□□ -1.77
PRPF39-208ENST00000554785 ADAM33Q9BZ11 813 aa3.98□□□□□ -1.77
PRPF39-208ENST00000554785 PCDHGA10Q9Y5H3 936 aa3.98□□□□□ -1.77
PRPF39-208ENST00000554785 PTPN5P54829 565 aa3.97□□□□□ -1.77
PRPF39-208ENST00000554785 LAPTM4BQ86VI4 370 aa3.97□□□□□ -1.77
PRPF39-208ENST00000554785 WNT2BQ93097 391 aa3.97□□□□□ -1.77
PRPF39-208ENST00000554785 JPH4Q96JJ6 628 aa3.97□□□□□ -1.77
PRPF39-208ENST00000554785 ONECUT3O60422 494 aaPredicted RBP3.97□□□□□ -1.77
PRPF39-208ENST00000554785 ITGBL1O95965 494 aaPredicted RBP3.96□□□□□ -1.78
PRPF39-208ENST00000554785 DDX12PQ92771 950 aa3.96□□□□□ -1.78
PRPF39-208ENST00000554785 ZBED2Q9BTP6 218 aa3.96□□□□□ -1.78
PRPF39-208ENST00000554785 E2F4Q16254 413 aa3.95□□□□□ -1.78
PRPF39-208ENST00000554785 ANKK1Q8NFD2 765 aa3.95□□□□□ -1.78
PRPF39-208ENST00000554785 ZDHHC16Q969W1 377 aa3.95□□□□□ -1.78
PRPF39-208ENST00000554785 COL9A1P20849 921 aa3.95□□□□□ -1.78
PRPF39-208ENST00000554785 WFS1O76024 890 aa3.94□□□□□ -1.78
PRPF39-208ENST00000554785 PRIM1P49642 420 aaKnown RBP3.94□□□□□ -1.78
PRPF39-208ENST00000554785 FBXW7Q969H0 707 aa3.94□□□□□ -1.78
PRPF39-208ENST00000554785 KRTAP9-9Q9BYP9 154 aa3.94□□□□□ -1.78
PRPF39-208ENST00000554785 KRTAP9-4Q9BYQ2 154 aa3.94□□□□□ -1.78
PRPF39-208ENST00000554785 RABGEF1Q9UJ41 708 aa3.94□□□□□ -1.78
PRPF39-208ENST00000554785 PPP1R3GB7ZBB8 358 aa3.94□□□□□ -1.78
PRPF39-208ENST00000554785 PDIA6Q15084 440 aa3.94□□□□□ -1.78
PRPF39-208ENST00000554785 PHF14O94880 888 aa3.93□□□□□ -1.78
PRPF39-208ENST00000554785 PROX2Q3B8N5 592 aa3.93□□□□□ -1.78
PRPF39-208ENST00000554785 WDR70Q9NW82 654 aa3.93□□□□□ -1.78
PRPF39-208ENST00000554785 PLCB2Q00722 1185 aa3.92□□□□□ -1.78
PRPF39-208ENST00000554785 RBM33Q96EV2 1170 aaKnown RBP3.92□□□□□ -1.78
PRPF39-208ENST00000554785 TSR1Q2NL82 804 aaKnown RBP3.92□□□□□ -1.78
PRPF39-208ENST00000554785 TYW1BQ6NUM6 668 aa3.92□□□□□ -1.78
PRPF39-208ENST00000554785 ARIH1Q9Y4X5 557 aaPredicted RBP3.92□□□□□ -1.78
PRPF39-208ENST00000554785 KCNC4Q03721 635 aa3.91□□□□□ -1.78
PRPF39-208ENST00000554785 C6orf132Q5T0Z8 1188 aa3.91□□□□□ -1.78
PRPF39-208ENST00000554785 KCNV2Q8TDN2 545 aa3.91□□□□□ -1.78
PRPF39-208ENST00000554785 NBR1Q14596 966 aa3.91□□□□□ -1.78
PRPF39-208ENST00000554785 SOWAHBA6NEL2 793 aa3.9□□□□□ -1.79
PRPF39-208ENST00000554785 GRXCR2A6NFK2 248 aa3.9□□□□□ -1.79
PRPF39-208ENST00000554785 KRTAP4-7Q9BYR0 210 aa3.9□□□□□ -1.79
PRPF39-208ENST00000554785 OSBPP22059 807 aa3.89□□□□□ -1.79
PRPF39-208ENST00000554785 EN1Q05925 392 aaPredicted RBP3.89□□□□□ -1.79
PRPF39-208ENST00000554785 EPAS1Q99814 870 aa3.89□□□□□ -1.79
PRPF39-208ENST00000554785 SPDYE16A6NNV3 312 aaPredicted RBP3.89□□□□□ -1.79
PRPF39-208ENST00000554785 MLLT3P42568 568 aaPredicted RBP3.89□□□□□ -1.79
PRPF39-208ENST00000554785 C3orf80F5H4A9 247 aa3.88□□□□□ -1.79
PRPF39-208ENST00000554785 MAP3K7O43318 606 aa3.88□□□□□ -1.79
PRPF39-208ENST00000554785 NECTIN2Q92692 538 aa3.88□□□□□ -1.79
PRPF39-208ENST00000554785 CDHR5Q9HBB8 845 aa3.88□□□□□ -1.79
PRPF39-208ENST00000554785 KRTAP9-8Q9BYQ0 159 aa3.88□□□□□ -1.79
PRPF39-208ENST00000554785 KIAA1468Q9P260 1216 aa3.88□□□□□ -1.79
PRPF39-208ENST00000554785 KDM2AQ9Y2K7 1162 aa3.88□□□□□ -1.79
PRPF39-208ENST00000554785 POTECB2RU33 542 aa3.87□□□□□ -1.79
PRPF39-208ENST00000554785 ARHGEF1Q92888 912 aaKnown RBP3.87□□□□□ -1.79
PRPF39-208ENST00000554785 FAM198AQ9UFP1 575 aa3.87□□□□□ -1.79
PRPF39-208ENST00000554785 SEPT9Q9UHD8 586 aaPredicted RBP3.87□□□□□ -1.79
PRPF39-208ENST00000554785 TSR3Q9UJK0 312 aaKnown RBP3.87□□□□□ -1.79
PRPF39-208ENST00000554785 TSKSQ9UJT2 592 aa3.87□□□□□ -1.79
PRPF39-208ENST00000554785 FAM98CQ17RN3 349 aaKnown RBP3.86□□□□□ -1.79
PRPF39-208ENST00000554785 ZFRQ96KR1 1074 aaKnown RBP3.86□□□□□ -1.79
PRPF39-208ENST00000554785 TRIM6-TRIM34B2RNG4 842 aa3.86□□□□□ -1.79
PRPF39-208ENST00000554785 NPDC1Q9NQX5 325 aaPredicted RBP3.86□□□□□ -1.79
PRPF39-208ENST00000554785 SEMA3EO15041 775 aa3.85□□□□□ -1.79
PRPF39-208ENST00000554785 HAP1P54257 671 aaPredicted RBP3.85□□□□□ -1.79
PRPF39-208ENST00000554785 LRCH3Q96II8 777 aa3.85□□□□□ -1.79
PRPF39-208ENST00000554785 CDKN2AIPQ9NXV6 580 aaPredicted RBP3.85□□□□□ -1.79
PRPF39-208ENST00000554785 SMAPO00193 183 aa3.85□□□□□ -1.79
PRPF39-208ENST00000554785 CDCA7LQ96GN5 454 aa3.85□□□□□ -1.79
PRPF39-208ENST00000554785 V9GY48 417 aaPredicted RBP3.85□□□□□ -1.79
PRPF39-208ENST00000554785 BCAMP50895 628 aa3.84□□□□□ -1.79
PRPF39-208ENST00000554785 KRTAP5-3Q6L8H2 238 aa3.84□□□□□ -1.79
PRPF39-208ENST00000554785 PACS2Q86VP3 889 aa3.84□□□□□ -1.79
PRPF39-208ENST00000554785 PRSS12P56730 875 aa3.83□□□□□ -1.8
PRPF39-208ENST00000554785 KCTD17Q8N5Z5 321 aa3.83□□□□□ -1.8
PRPF39-208ENST00000554785 CERKQ8TCT0 537 aa3.83□□□□□ -1.8
Retrieved 100 of 20,778 RNA–protein pairs in 23.9 ms