RNA–Protein interactions for RNA: ENST00000553923.1

SRP54-204, Transcript of signal recognition particle 54, humanhuman

TSL 2

Gene SRP54, Length 573 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SRP54-204ENST00000553923 TYW1BQ6NUM6 668 aa8.19□□□□□ -1.1
SRP54-204ENST00000553923 FBXW7Q969H0 707 aa8.19□□□□□ -1.1
SRP54-204ENST00000553923 ONECUT3O60422 494 aaPredicted RBP8.17□□□□□ -1.1
SRP54-204ENST00000553923 ITGBL1O95965 494 aaPredicted RBP8.16□□□□□ -1.1
SRP54-204ENST00000553923 LAPTM4BQ86VI4 370 aa8.16□□□□□ -1.1
SRP54-204ENST00000553923 C6orf132Q5T0Z8 1188 aa8.15□□□□□ -1.1
SRP54-204ENST00000553923 KIAA1468Q9P260 1216 aa8.15□□□□□ -1.1
SRP54-204ENST00000553923 SOWAHBA6NEL2 793 aa8.14□□□□□ -1.11
SRP54-204ENST00000553923 BCAMP50895 628 aa8.14□□□□□ -1.11
SRP54-204ENST00000553923 ANKK1Q8NFD2 765 aa8.14□□□□□ -1.11
SRP54-204ENST00000553923 EPAS1Q99814 870 aa8.14□□□□□ -1.11
SRP54-204ENST00000553923 DPYSL4O14531 572 aa8.13□□□□□ -1.11
SRP54-204ENST00000553923 ZFRQ96KR1 1074 aaKnown RBP8.13□□□□□ -1.11
SRP54-204ENST00000553923 TRIM6-TRIM34B2RNG4 842 aa8.1□□□□□ -1.11
SRP54-204ENST00000553923 DCAF8L2P0C7V8 631 aa8.1□□□□□ -1.11
SRP54-204ENST00000553923 IRX2Q9BZI1 471 aaPredicted RBP8.1□□□□□ -1.11
SRP54-204ENST00000553923 WBP1LQ9NX94 342 aa8.09□□□□□ -1.11
SRP54-204ENST00000553923 SEPT9Q9UHD8 586 aaPredicted RBP8.09□□□□□ -1.11
SRP54-204ENST00000553923 NYAP1Q6ZVC0 841 aa8.08□□□□□ -1.12
SRP54-204ENST00000553923 DDX12PQ92771 950 aa8.07□□□□□ -1.12
SRP54-204ENST00000553923 RBM33Q96EV2 1170 aaKnown RBP8.07□□□□□ -1.12
SRP54-204ENST00000553923 FAM98CQ17RN3 349 aaKnown RBP8.06□□□□□ -1.12
SRP54-204ENST00000553923 EN1Q05925 392 aaPredicted RBP8.05□□□□□ -1.12
SRP54-204ENST00000553923 TSKSQ9UJT2 592 aa8.05□□□□□ -1.12
SRP54-204ENST00000553923 PDIA6Q15084 440 aa8.04□□□□□ -1.12
SRP54-204ENST00000553923 TSR1Q2NL82 804 aaKnown RBP8.04□□□□□ -1.12
SRP54-204ENST00000553923 BBXQ8WY36 941 aaPredicted RBP8.03□□□□□ -1.12
SRP54-204ENST00000553923 TSR3Q9UJK0 312 aaKnown RBP8.03□□□□□ -1.12
SRP54-204ENST00000553923 PRIM1P49642 420 aaKnown RBP8.02□□□□□ -1.13
SRP54-204ENST00000553923 KCNC4Q03721 635 aa8.02□□□□□ -1.13
SRP54-204ENST00000553923 CDKN2AIPQ9NXV6 580 aaPredicted RBP8.02□□□□□ -1.13
SRP54-204ENST00000553923 FAM198AQ9UFP1 575 aa8.01□□□□□ -1.13
SRP54-204ENST00000553923 HPS5Q9UPZ3 1129 aa8.01□□□□□ -1.13
SRP54-204ENST00000553923 C3orf80F5H4A9 247 aa8□□□□□ -1.13
SRP54-204ENST00000553923 NBR1Q14596 966 aa8□□□□□ -1.13
SRP54-204ENST00000553923 LRCH3Q96II8 777 aa8□□□□□ -1.13
SRP54-204ENST00000553923 ARIH1Q9Y4X5 557 aaPredicted RBP8□□□□□ -1.13
SRP54-204ENST00000553923 SPDYE16A6NNV3 312 aaPredicted RBP7.99□□□□□ -1.13
SRP54-204ENST00000553923 PACS2Q86VP3 889 aa7.99□□□□□ -1.13
SRP54-204ENST00000553923 MAP3K7O43318 606 aa7.98□□□□□ -1.13
SRP54-204ENST00000553923 PRSS12P56730 875 aa7.97□□□□□ -1.13
SRP54-204ENST00000553923 CDCA7LQ96GN5 454 aa7.97□□□□□ -1.13
SRP54-204ENST00000553923 SMAPO00193 183 aa7.95□□□□□ -1.14
SRP54-204ENST00000553923 TJAP1Q5JTD0 557 aa7.95□□□□□ -1.14
SRP54-204ENST00000553923 PPP4CP60510 307 aa7.94□□□□□ -1.14
SRP54-204ENST00000553923 SAMD7Q7Z3H4 446 aa7.94□□□□□ -1.14
SRP54-204ENST00000553923 LCE2BO14633 110 aa7.93□□□□□ -1.14
SRP54-204ENST00000553923 OSBPP22059 807 aa7.93□□□□□ -1.14
SRP54-204ENST00000553923 E2F4Q16254 413 aa7.93□□□□□ -1.14
SRP54-204ENST00000553923 SPRYD3Q8NCJ5 442 aa7.93□□□□□ -1.14
SRP54-204ENST00000553923 CERKQ8TCT0 537 aa7.93□□□□□ -1.14
SRP54-204ENST00000553923 TATDN2Q93075 761 aa7.93□□□□□ -1.14
SRP54-204ENST00000553923 Q6ZNB5 142 aa7.91□□□□□ -1.14
SRP54-204ENST00000553923 CDHR5Q9HBB8 845 aa7.91□□□□□ -1.14
SRP54-204ENST00000553923 GRXCR2A6NFK2 248 aa7.9□□□□□ -1.14
SRP54-204ENST00000553923 TTC13Q8NBP0 860 aa7.9□□□□□ -1.14
SRP54-204ENST00000553923 PNMA3Q9UL41 463 aa7.9□□□□□ -1.14
SRP54-204ENST00000553923 MTRQ99707 1265 aa7.89□□□□□ -1.15
SRP54-204ENST00000553923 NPDC1Q9NQX5 325 aaPredicted RBP7.89□□□□□ -1.15
SRP54-204ENST00000553923 NBPF26B4DH59 902 aa7.88□□□□□ -1.15
SRP54-204ENST00000553923 NUDT18Q6ZVK8 323 aa7.88□□□□□ -1.15
SRP54-204ENST00000553923 IL21Q9HBE4 155 aa7.88□□□□□ -1.15
SRP54-204ENST00000553923 RBM27Q9P2N5 1060 aaKnown RBP7.88□□□□□ -1.15
SRP54-204ENST00000553923 LAPTM4AQ15012 233 aa7.87□□□□□ -1.15
SRP54-204ENST00000553923 PPP1R18Q6NYC8 613 aa7.87□□□□□ -1.15
SRP54-204ENST00000553923 ZNF516Q92618 1163 aa7.87□□□□□ -1.15
SRP54-204ENST00000553923 APLP1P51693 650 aa7.86□□□□□ -1.15
SRP54-204ENST00000553923 GFRA3O60609 400 aa7.85□□□□□ -1.15
SRP54-204ENST00000553923 PRKD2Q9BZL6 878 aa7.84□□□□□ -1.15
SRP54-204ENST00000553923 ZBTB4Q9P1Z0 1013 aaPredicted RBP7.84□□□□□ -1.15
SRP54-204ENST00000553923 WDR70Q9NW82 654 aa7.83□□□□□ -1.16
SRP54-204ENST00000553923 V9GY48 417 aaPredicted RBP7.83□□□□□ -1.16
SRP54-204ENST00000553923 TRAF7Q6Q0C0 670 aa7.82□□□□□ -1.16
SRP54-204ENST00000553923 PAXIP1Q6ZW49 1069 aaPredicted RBP7.82□□□□□ -1.16
SRP54-204ENST00000553923 NKX2-3Q8TAU0 364 aa7.82□□□□□ -1.16
SRP54-204ENST00000553923 EIF4ENIF1Q9NRA8 985 aaKnown RBP7.82□□□□□ -1.16
SRP54-204ENST00000553923 NRG2O14511 850 aaPredicted RBP7.81□□□□□ -1.16
SRP54-204ENST00000553923 SWT1Q5T5J6 900 aaKnown RBP7.81□□□□□ -1.16
SRP54-204ENST00000553923 PADI6Q6TGC4 694 aa7.81□□□□□ -1.16
SRP54-204ENST00000553923 EYA1Q99502 592 aa7.81□□□□□ -1.16
SRP54-204ENST00000553923 HDGFP51858 240 aaKnown RBP7.8□□□□□ -1.16
SRP54-204ENST00000553923 CFAP44Q96MT7 982 aa7.8□□□□□ -1.16
SRP54-204ENST00000553923 RNF40O75150 1001 aa7.77□□□□□ -1.17
SRP54-204ENST00000553923 SLF2Q8IX21 1173 aa7.77□□□□□ -1.17
SRP54-204ENST00000553923 NECTIN2Q92692 538 aa7.76□□□□□ -1.17
SRP54-204ENST00000553923 ZPR1O75312 459 aa7.75□□□□□ -1.17
SRP54-204ENST00000553923 COPS2P61201 443 aa7.75□□□□□ -1.17
SRP54-204ENST00000553923 MLLT3P42568 568 aaPredicted RBP7.74□□□□□ -1.17
SRP54-204ENST00000553923 EMID1Q96A84 441 aaPredicted RBP7.74□□□□□ -1.17
SRP54-204ENST00000553923 TMUB1Q9BVT8 246 aa7.74□□□□□ -1.17
SRP54-204ENST00000553923 AMER1Q5JTC6 1135 aaPredicted RBP7.73□□□□□ -1.17
SRP54-204ENST00000553923 PTGDRQ13258 359 aa7.72□□□□□ -1.17
SRP54-204ENST00000553923 RTN4Q9NQC3 1192 aaKnown RBP7.72□□□□□ -1.17
SRP54-204ENST00000553923 TRIM67Q6ZTA4 783 aa7.71□□□□□ -1.18
SRP54-204ENST00000553923 ARHGEF1Q92888 912 aaKnown RBP7.71□□□□□ -1.18
SRP54-204ENST00000553923 PDZRN3Q9UPQ7 1066 aa7.71□□□□□ -1.18
SRP54-204ENST00000553923 GGCXP38435 758 aa7.7□□□□□ -1.18
SRP54-204ENST00000553923 RNF223E7ERA6 249 aa7.69□□□□□ -1.18
SRP54-204ENST00000553923 BLOC1S3Q6QNY0 202 aa7.69□□□□□ -1.18
SRP54-204ENST00000553923 TMEM134Q9H6X4 195 aa7.69□□□□□ -1.18
Retrieved 100 of 20,778 RNA–protein pairs in 47.1 ms