RNA–Protein interactions for RNA: ENST00000553693.5

SCFD1-210, Transcript of sec1 family domain containing 1, humanhuman

TSL 3

Gene SCFD1, Length 490 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCFD1-210ENST00000553693 FOSBP53539 338 aa11.09□□□□□ -0.63
SCFD1-210ENST00000553693 LAPTM4AQ15012 233 aa11.09□□□□□ -0.63
SCFD1-210ENST00000553693 EMILIN3Q9NT22 766 aa11.09□□□□□ -0.63
SCFD1-210ENST00000553693 EVI5O60447 810 aa11.07□□□□□ -0.64
SCFD1-210ENST00000553693 NBPF3Q9H094 633 aa11.07□□□□□ -0.64
SCFD1-210ENST00000553693 PLCB2Q00722 1185 aa11.05□□□□□ -0.64
SCFD1-210ENST00000553693 ANO8Q9HCE9 1232 aaPredicted RBP11.04□□□□□ -0.64
SCFD1-210ENST00000553693 TSHZ2Q9NRE2 1034 aa11.04□□□□□ -0.64
SCFD1-210ENST00000553693 E2F4Q16254 413 aa11.03□□□□□ -0.64
SCFD1-210ENST00000553693 GFRA3O60609 400 aa11.02□□□□□ -0.65
SCFD1-210ENST00000553693 JPH4Q96JJ6 628 aa11.02□□□□□ -0.65
SCFD1-210ENST00000553693 DPYSL4O14531 572 aa11.01□□□□□ -0.65
SCFD1-210ENST00000553693 BCAMP50895 628 aa11.01□□□□□ -0.65
SCFD1-210ENST00000553693 ADAM33Q9BZ11 813 aa11.01□□□□□ -0.65
SCFD1-210ENST00000553693 ANKK1Q8NFD2 765 aa11□□□□□ -0.65
SCFD1-210ENST00000553693 KCNC4Q03721 635 aa10.99□□□□□ -0.65
SCFD1-210ENST00000553693 SOWAHBA6NEL2 793 aa10.96□□□□□ -0.65
SCFD1-210ENST00000553693 SPDYE16A6NNV3 312 aaPredicted RBP10.96□□□□□ -0.65
SCFD1-210ENST00000553693 ZDHHC16Q969W1 377 aa10.96□□□□□ -0.65
SCFD1-210ENST00000553693 RABGEF1Q9UJ41 708 aa10.96□□□□□ -0.65
SCFD1-210ENST00000553693 ARIH1Q9Y4X5 557 aaPredicted RBP10.96□□□□□ -0.65
SCFD1-210ENST00000553693 PDIA6Q15084 440 aa10.94□□□□□ -0.66
SCFD1-210ENST00000553693 NYAP1Q6ZVC0 841 aa10.94□□□□□ -0.66
SCFD1-210ENST00000553693 WBP1LQ9NX94 342 aa10.94□□□□□ -0.66
SCFD1-210ENST00000553693 PROX2Q3B8N5 592 aa10.93□□□□□ -0.66
SCFD1-210ENST00000553693 NRG2O14511 850 aaPredicted RBP10.92□□□□□ -0.66
SCFD1-210ENST00000553693 PHF14O94880 888 aa10.92□□□□□ -0.66
SCFD1-210ENST00000553693 FBXW7Q969H0 707 aa10.92□□□□□ -0.66
SCFD1-210ENST00000553693 TYW1BQ6NUM6 668 aa10.91□□□□□ -0.66
SCFD1-210ENST00000553693 ZNF775Q96BV0 537 aaPredicted RBP10.91□□□□□ -0.66
SCFD1-210ENST00000553693 ZNF787Q6DD87 383 aa10.9□□□□□ -0.66
SCFD1-210ENST00000553693 EPAS1Q99814 870 aa10.9□□□□□ -0.66
SCFD1-210ENST00000553693 PCDHGA10Q9Y5H3 936 aa10.9□□□□□ -0.66
SCFD1-210ENST00000553693 PPP1R3GB7ZBB8 358 aa10.89□□□□□ -0.67
SCFD1-210ENST00000553693 HAP1P54257 671 aaPredicted RBP10.88□□□□□ -0.67
SCFD1-210ENST00000553693 LAPTM4BQ86VI4 370 aa10.88□□□□□ -0.67
SCFD1-210ENST00000553693 ZFRQ96KR1 1074 aaKnown RBP10.88□□□□□ -0.67
SCFD1-210ENST00000553693 COL9A1P20849 921 aa10.87□□□□□ -0.67
SCFD1-210ENST00000553693 P3H3Q8IVL6 736 aa10.87□□□□□ -0.67
SCFD1-210ENST00000553693 DDX12PQ92771 950 aa10.86□□□□□ -0.67
SCFD1-210ENST00000553693 ARHGEF1Q92888 912 aaKnown RBP10.86□□□□□ -0.67
SCFD1-210ENST00000553693 KCNV2Q8TDN2 545 aa10.84□□□□□ -0.67
SCFD1-210ENST00000553693 PRKD2Q9BZL6 878 aa10.84□□□□□ -0.67
SCFD1-210ENST00000553693 NBR1Q14596 966 aa10.83□□□□□ -0.68
SCFD1-210ENST00000553693 KIAA1468Q9P260 1216 aa10.81□□□□□ -0.68
SCFD1-210ENST00000553693 EN1Q05925 392 aaPredicted RBP10.79□□□□□ -0.68
SCFD1-210ENST00000553693 RBM33Q96EV2 1170 aaKnown RBP10.79□□□□□ -0.68
SCFD1-210ENST00000553693 MAP3K7O43318 606 aa10.78□□□□□ -0.68
SCFD1-210ENST00000553693 SEPT9Q9UHD8 586 aaPredicted RBP10.78□□□□□ -0.68
SCFD1-210ENST00000553693 GRXCR2A6NFK2 248 aa10.77□□□□□ -0.69
SCFD1-210ENST00000553693 C6orf132Q5T0Z8 1188 aa10.77□□□□□ -0.69
SCFD1-210ENST00000553693 TSR3Q9UJK0 312 aaKnown RBP10.77□□□□□ -0.69
SCFD1-210ENST00000553693 V9GY48 417 aaPredicted RBP10.76□□□□□ -0.69
SCFD1-210ENST00000553693 HPS5Q9UPZ3 1129 aa10.75□□□□□ -0.69
SCFD1-210ENST00000553693 ONECUT3O60422 494 aaPredicted RBP10.74□□□□□ -0.69
SCFD1-210ENST00000553693 TJAP1Q5JTD0 557 aa10.74□□□□□ -0.69
SCFD1-210ENST00000553693 CDKN2AIPQ9NXV6 580 aaPredicted RBP10.73□□□□□ -0.69
SCFD1-210ENST00000553693 OSBPP22059 807 aa10.71□□□□□ -0.69
SCFD1-210ENST00000553693 FAM98CQ17RN3 349 aaKnown RBP10.71□□□□□ -0.69
SCFD1-210ENST00000553693 PPP1R18Q6NYC8 613 aa10.71□□□□□ -0.69
SCFD1-210ENST00000553693 VSIG10Q8N0Z9 540 aa10.71□□□□□ -0.69
SCFD1-210ENST00000553693 PDZRN3Q9UPQ7 1066 aa10.71□□□□□ -0.69
SCFD1-210ENST00000553693 TSR1Q2NL82 804 aaKnown RBP10.7□□□□□ -0.7
SCFD1-210ENST00000553693 CERKQ8TCT0 537 aa10.7□□□□□ -0.7
SCFD1-210ENST00000553693 LRCH3Q96II8 777 aa10.7□□□□□ -0.7
SCFD1-210ENST00000553693 TRIM6-TRIM34B2RNG4 842 aa10.67□□□□□ -0.7
SCFD1-210ENST00000553693 PRIM1P49642 420 aaKnown RBP10.67□□□□□ -0.7
SCFD1-210ENST00000553693 KDM2AQ9Y2K7 1162 aa10.67□□□□□ -0.7
SCFD1-210ENST00000553693 MLLT3P42568 568 aaPredicted RBP10.66□□□□□ -0.7
SCFD1-210ENST00000553693 MTRQ99707 1265 aa10.63□□□□□ -0.71
SCFD1-210ENST00000553693 EIF4ENIF1Q9NRA8 985 aaKnown RBP10.63□□□□□ -0.71
SCFD1-210ENST00000553693 PRSS12P56730 875 aa10.62□□□□□ -0.71
SCFD1-210ENST00000553693 LCE2AQ5TA79 106 aaPredicted RBP10.62□□□□□ -0.71
SCFD1-210ENST00000553693 PACS2Q86VP3 889 aa10.62□□□□□ -0.71
SCFD1-210ENST00000553693 CDHR5Q9HBB8 845 aa10.62□□□□□ -0.71
SCFD1-210ENST00000553693 RBM27Q9P2N5 1060 aaKnown RBP10.62□□□□□ -0.71
SCFD1-210ENST00000553693 POTECB2RU33 542 aa10.61□□□□□ -0.71
SCFD1-210ENST00000553693 SEMA3EO15041 775 aa10.61□□□□□ -0.71
SCFD1-210ENST00000553693 CDCA7LQ96GN5 454 aa10.61□□□□□ -0.71
SCFD1-210ENST00000553693 PPP4CP60510 307 aa10.6□□□□□ -0.71
SCFD1-210ENST00000553693 IL21Q9HBE4 155 aa10.6□□□□□ -0.71
SCFD1-210ENST00000553693 SMYD5Q6GMV2 418 aa10.59□□□□□ -0.71
SCFD1-210ENST00000553693 ZNF516Q92618 1163 aa10.59□□□□□ -0.71
SCFD1-210ENST00000553693 TSKSQ9UJT2 592 aa10.59□□□□□ -0.71
SCFD1-210ENST00000553693 TESPA1A2RU30 521 aaPredicted RBP10.58□□□□□ -0.72
SCFD1-210ENST00000553693 NBPF26B4DH59 902 aa10.58□□□□□ -0.72
SCFD1-210ENST00000553693 TRIM67Q6ZTA4 783 aa10.58□□□□□ -0.72
SCFD1-210ENST00000553693 MYT1Q01538 1121 aa10.55□□□□□ -0.72
SCFD1-210ENST00000553693 NUTM2FA1L443 756 aa10.54□□□□□ -0.72
SCFD1-210ENST00000553693 TREML4Q6UXN2 200 aa10.54□□□□□ -0.72
SCFD1-210ENST00000553693 NPDC1Q9NQX5 325 aaPredicted RBP10.54□□□□□ -0.72
SCFD1-210ENST00000553693 NKX2-3Q8TAU0 364 aa10.53□□□□□ -0.72
SCFD1-210ENST00000553693 PTGDRQ13258 359 aa10.52□□□□□ -0.73
SCFD1-210ENST00000553693 PADI6Q6TGC4 694 aa10.52□□□□□ -0.73
SCFD1-210ENST00000553693 FAM198AQ9UFP1 575 aa10.52□□□□□ -0.73
SCFD1-210ENST00000553693 SAMD7Q7Z3H4 446 aa10.51□□□□□ -0.73
SCFD1-210ENST00000553693 TTC13Q8NBP0 860 aa10.51□□□□□ -0.73
SCFD1-210ENST00000553693 PNMA3Q9UL41 463 aa10.51□□□□□ -0.73
SCFD1-210ENST00000553693 FCHSD2O94868 740 aa10.5□□□□□ -0.73
SCFD1-210ENST00000553693 TATDN2Q93075 761 aa10.5□□□□□ -0.73
Retrieved 100 of 20,778 RNA–protein pairs in 60.3 ms