RNA–Protein interactions for RNA: ENST00000551691.5

LIMA1-208, Transcript of LIM domain and actin binding 1, humanhuman

TSL 3

Gene LIMA1, Length 583 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-208ENST00000551691 THSD4Q6ZMP0 1018 aa7.83□□□□□ -1.16
LIMA1-208ENST00000551691 WNT2BQ93097 391 aa7.83□□□□□ -1.16
LIMA1-208ENST00000551691 SLC4A5Q9BY07 1137 aa7.83□□□□□ -1.16
LIMA1-208ENST00000551691 CECR2Q9BXF3 1484 aa7.82□□□□□ -1.16
LIMA1-208ENST00000551691 RBM33Q96EV2 1170 aaKnown RBP7.82□□□□□ -1.16
LIMA1-208ENST00000551691 DDX12PQ92771 950 aa7.81□□□□□ -1.16
LIMA1-208ENST00000551691 PPP1R3GB7ZBB8 358 aa7.8□□□□□ -1.16
LIMA1-208ENST00000551691 TYW1BQ6NUM6 668 aa7.8□□□□□ -1.16
LIMA1-208ENST00000551691 BCANQ96GW7 911 aa7.79□□□□□ -1.16
LIMA1-208ENST00000551691 NBPF3Q9H094 633 aa7.79□□□□□ -1.16
LIMA1-208ENST00000551691 PHF14O94880 888 aa7.78□□□□□ -1.16
LIMA1-208ENST00000551691 CAMK2BQ13554 666 aa7.78□□□□□ -1.16
LIMA1-208ENST00000551691 BBXQ8WY36 941 aaPredicted RBP7.78□□□□□ -1.16
LIMA1-208ENST00000551691 SEPT9Q9UHD8 586 aaPredicted RBP7.78□□□□□ -1.16
LIMA1-208ENST00000551691 BCAMP50895 628 aa7.77□□□□□ -1.17
LIMA1-208ENST00000551691 C6orf132Q5T0Z8 1188 aa7.76□□□□□ -1.17
LIMA1-208ENST00000551691 KIAA1468Q9P260 1216 aa7.76□□□□□ -1.17
LIMA1-208ENST00000551691 FBXW7Q969H0 707 aa7.75□□□□□ -1.17
LIMA1-208ENST00000551691 CFAP44Q96MT7 982 aa7.75□□□□□ -1.17
LIMA1-208ENST00000551691 RABGEF1Q9UJ41 708 aa7.75□□□□□ -1.17
LIMA1-208ENST00000551691 BICRAQ9NZM4 1560 aa7.75□□□□□ -1.17
LIMA1-208ENST00000551691 NBR1Q14596 966 aa7.74□□□□□ -1.17
LIMA1-208ENST00000551691 TSR1Q2NL82 804 aaKnown RBP7.74□□□□□ -1.17
LIMA1-208ENST00000551691 SPRYD3Q8NCJ5 442 aa7.74□□□□□ -1.17
LIMA1-208ENST00000551691 ZBTB4Q9P1Z0 1013 aaPredicted RBP7.74□□□□□ -1.17
LIMA1-208ENST00000551691 CC2D2AQ9P2K1 1620 aa7.74□□□□□ -1.17
LIMA1-208ENST00000551691 PAXIP1Q6ZW49 1069 aaPredicted RBP7.73□□□□□ -1.17
LIMA1-208ENST00000551691 ANKK1Q8NFD2 765 aa7.73□□□□□ -1.17
LIMA1-208ENST00000551691 UNC13AQ9UPW8 1703 aa7.72□□□□□ -1.17
LIMA1-208ENST00000551691 EPAS1Q99814 870 aa7.72□□□□□ -1.17
LIMA1-208ENST00000551691 MAP3K7O43318 606 aa7.71□□□□□ -1.18
LIMA1-208ENST00000551691 ZFRQ96KR1 1074 aaKnown RBP7.7□□□□□ -1.18
LIMA1-208ENST00000551691 TRIM6-TRIM34B2RNG4 842 aa7.69□□□□□ -1.18
LIMA1-208ENST00000551691 PRIM1P49642 420 aaKnown RBP7.69□□□□□ -1.18
LIMA1-208ENST00000551691 VSIG10Q8N0Z9 540 aa7.69□□□□□ -1.18
LIMA1-208ENST00000551691 WBP1LQ9NX94 342 aa7.69□□□□□ -1.18
LIMA1-208ENST00000551691 GRXCR2A6NFK2 248 aa7.68□□□□□ -1.18
LIMA1-208ENST00000551691 SMAPO00193 183 aa7.68□□□□□ -1.18
LIMA1-208ENST00000551691 EN1Q05925 392 aaPredicted RBP7.68□□□□□ -1.18
LIMA1-208ENST00000551691 PDIA6Q15084 440 aa7.68□□□□□ -1.18
LIMA1-208ENST00000551691 NACADO15069 1562 aa7.67□□□□□ -1.18
LIMA1-208ENST00000551691 A0A0G2JS52 829 aa7.67□□□□□ -1.18
LIMA1-208ENST00000551691 SOWAHBA6NEL2 793 aa7.67□□□□□ -1.18
LIMA1-208ENST00000551691 TSKSQ9UJT2 592 aa7.67□□□□□ -1.18
LIMA1-208ENST00000551691 E2F4Q16254 413 aa7.66□□□□□ -1.18
LIMA1-208ENST00000551691 C3orf80F5H4A9 247 aa7.65□□□□□ -1.18
LIMA1-208ENST00000551691 LAPTM4BQ86VI4 370 aa7.65□□□□□ -1.18
LIMA1-208ENST00000551691 HPS5Q9UPZ3 1129 aa7.65□□□□□ -1.18
LIMA1-208ENST00000551691 FAM98CQ17RN3 349 aaKnown RBP7.64□□□□□ -1.19
LIMA1-208ENST00000551691 CDHR5Q9HBB8 845 aa7.64□□□□□ -1.19
LIMA1-208ENST00000551691 WDR70Q9NW82 654 aa7.64□□□□□ -1.19
LIMA1-208ENST00000551691 FAM198AQ9UFP1 575 aa7.64□□□□□ -1.19
LIMA1-208ENST00000551691 CDKN2AIPQ9NXV6 580 aaPredicted RBP7.63□□□□□ -1.19
LIMA1-208ENST00000551691 SPDYE16A6NNV3 312 aaPredicted RBP7.62□□□□□ -1.19
LIMA1-208ENST00000551691 ONECUT3O60422 494 aaPredicted RBP7.62□□□□□ -1.19
LIMA1-208ENST00000551691 IFFO2Q5TF58 517 aa7.62□□□□□ -1.19
LIMA1-208ENST00000551691 CDCA7LQ96GN5 454 aa7.62□□□□□ -1.19
LIMA1-208ENST00000551691 LRCH3Q96II8 777 aa7.62□□□□□ -1.19
LIMA1-208ENST00000551691 PACS2Q86VP3 889 aa7.61□□□□□ -1.19
LIMA1-208ENST00000551691 ITGBL1O95965 494 aaPredicted RBP7.6□□□□□ -1.19
LIMA1-208ENST00000551691 SAMD7Q7Z3H4 446 aa7.6□□□□□ -1.19
LIMA1-208ENST00000551691 PRSS12P56730 875 aa7.59□□□□□ -1.19
LIMA1-208ENST00000551691 IRX2Q9BZI1 471 aaPredicted RBP7.59□□□□□ -1.19
LIMA1-208ENST00000551691 TSR3Q9UJK0 312 aaKnown RBP7.59□□□□□ -1.19
LIMA1-208ENST00000551691 PNMA3Q9UL41 463 aa7.59□□□□□ -1.19
LIMA1-208ENST00000551691 RNF40O75150 1001 aa7.58□□□□□ -1.2
LIMA1-208ENST00000551691 OSBPP22059 807 aa7.58□□□□□ -1.2
LIMA1-208ENST00000551691 KCNC4Q03721 635 aa7.58□□□□□ -1.2
LIMA1-208ENST00000551691 PRKCSHP14314 528 aaPredicted RBP7.57□□□□□ -1.2
LIMA1-208ENST00000551691 EIF4G1Q04637 1599 aaKnown RBP7.56□□□□□ -1.2
LIMA1-208ENST00000551691 PPP4CP60510 307 aa7.56□□□□□ -1.2
LIMA1-208ENST00000551691 TATDN2Q93075 761 aa7.56□□□□□ -1.2
LIMA1-208ENST00000551691 TSHZ2Q9NRE2 1034 aa7.56□□□□□ -1.2
LIMA1-208ENST00000551691 NUDT18Q6ZVK8 323 aa7.55□□□□□ -1.2
LIMA1-208ENST00000551691 TPRNQ4KMQ1 711 aa7.54□□□□□ -1.2
LIMA1-208ENST00000551691 NYAP1Q6ZVC0 841 aa7.54□□□□□ -1.2
LIMA1-208ENST00000551691 NBPF26B4DH59 902 aa7.53□□□□□ -1.2
LIMA1-208ENST00000551691 RGS20O76081 388 aa7.53□□□□□ -1.2
LIMA1-208ENST00000551691 PADI6Q6TGC4 694 aa7.53□□□□□ -1.2
LIMA1-208ENST00000551691 ARIH1Q9Y4X5 557 aaPredicted RBP7.53□□□□□ -1.2
LIMA1-208ENST00000551691 CUX2O14529 1486 aa7.53□□□□□ -1.2
LIMA1-208ENST00000551691 MLLT3P42568 568 aaPredicted RBP7.52□□□□□ -1.21
LIMA1-208ENST00000551691 CERKQ8TCT0 537 aa7.51□□□□□ -1.21
LIMA1-208ENST00000551691 TJAP1Q5JTD0 557 aa7.5□□□□□ -1.21
LIMA1-208ENST00000551691 ZNF516Q92618 1163 aa7.5□□□□□ -1.21
LIMA1-208ENST00000551691 MTRQ99707 1265 aa7.5□□□□□ -1.21
LIMA1-208ENST00000551691 NPDC1Q9NQX5 325 aaPredicted RBP7.5□□□□□ -1.21
LIMA1-208ENST00000551691 APLP1P51693 650 aa7.49□□□□□ -1.21
LIMA1-208ENST00000551691 SWT1Q5T5J6 900 aaKnown RBP7.49□□□□□ -1.21
LIMA1-208ENST00000551691 KCNV2Q8TDN2 545 aa7.49□□□□□ -1.21
LIMA1-208ENST00000551691 COPS2P61201 443 aa7.47□□□□□ -1.21
LIMA1-208ENST00000551691 Q6ZNB5 142 aa7.47□□□□□ -1.21
LIMA1-208ENST00000551691 NKX2-3Q8TAU0 364 aa7.47□□□□□ -1.21
LIMA1-208ENST00000551691 ERCC6Q03468 1493 aa7.46□□□□□ -1.22
LIMA1-208ENST00000551691 HDGFP51858 240 aaKnown RBP7.45□□□□□ -1.22
LIMA1-208ENST00000551691 FAM161AQ3B820 660 aa7.45□□□□□ -1.22
LIMA1-208ENST00000551691 TTC13Q8NBP0 860 aa7.45□□□□□ -1.22
LIMA1-208ENST00000551691 IL21Q9HBE4 155 aa7.45□□□□□ -1.22
LIMA1-208ENST00000551691 KDM2AQ9Y2K7 1162 aa7.45□□□□□ -1.22
LIMA1-208ENST00000551691 PPP1R18Q6NYC8 613 aa7.44□□□□□ -1.22
Retrieved 100 of 20,778 RNA–protein pairs in 21.4 ms